2XPXA

Crystal structure of bhrf1:bak bh3 complex
Total Genus 57
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
155
structure length
153
Chain Sequence
YSTREILLALCIRDSRVHGNGTLHPVLELAARETPLRLSPEDTVVLRYHVLLEEIIERNSETFTETWNRFITHTEHVDLDFNSVFLEIFHRPSLGRALAWMAWCMHACRTLCCNQSTPYYVVDLSVRGMLEASEGLDGWIHQQGGWSTLIEDN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Apoptosis
molecule keywords APOPTOSIS REGULATOR BHRF1
publication title Structural Basis for Apoptosis Inhibition by Epstein-Barr Virus Bhrf1.
pubmed doi rcsb
source organism Human herpesvirus 4
total genus 57
structure length 153
sequence length 155
ec nomenclature
pdb deposition date 2010-08-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00452 Bcl-2 Apoptosis regulator proteins, Bcl-2 family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.437.10 Mainly Alpha Orthogonal Bundle Apoptosis Regulator Bcl-x Blc2-like 2xpxA00
2VOIA 4ZIFA 1MK3A 2K7WA 3MK8A 5FC4A 4BD8A 3IIGA 3PK1A 3WIXA 3MQPA 2YV6A 5JSBA 4ZEQA 2O2MA 1F16A 1PQ0A 2XA0A 2M5BA 3IHDA 4BPJA 4ZIIA 4BD7A 4BPIA 5FDOA 4OQ5A 2BIDA 2V6QA 3IHCA 2WH6A 1PQ1A 3BL2A 1G5JA 1R2DA 2RODA 4ZIGA 4K5BC 4YK9A 3KJ2A 2IMTA 1AF3A 2IMSA 3DVUA 2VOGA 1Q59A 2O2FA 2VOHA 3KJ1A 2NLAA 4QNQA 1R2GA 1TY4A 4MI8A 2ROCA 4ZIEA 5IEZA 4S0PA 1OHUA 2LR1A 3D7VA 3IHEA 2O21A 2W3LA 5FMIA 2VM6A 1YSGA 5C6HA 4U2UA 4HW2A 2JCNA 1LXLA 3IO9A 4B4SA 3I1HA 2VOFA 2O2NA 2A5YA 1YSIA 5KU9A 2BZWA 4HW3A 4U2VA 4OYDA 1R2EA 2JM6B 5IF4A 5C3FA 4WMRA 1R2HA 2NL9A 4BD6A 3KJ0A 2ME8A 1ZY3A 3WIYA 1K3KA 4HW4A 4G35A 4BDUA 2MEJA 5KTGA 2XPXA 2KBWA 1BXLA 3KZ0A 1MAZA 3CVAX 4S0OA 4QVXA 1O0LA 3QBRA 4OQ6A 1GJHA 1YSNA 1YSWA 1G5MA 2ABOA 3ILCA 1WSXA 2O22A 4YJ4A 2MHSA 2B48A 3IIHA 4ZBIA 1R2IA 4BD2A 4ZIHA 1DDBA 5FDRA 2KUAA 4ZBFA 2PQKA
chains in the Genus database with same CATH superfamily
2VOIA 4ZIFA 1MK3A 2K7WA 3MK8A 5FC4A 4BD8A 4BBCA 3IIGA 3PK1A 3WIXA 3MQPA 2YV6A 4UF2A 5JSBA 4D2LA 4ZEQA 2O2MA 1F16A 1PQ0A 2XA0A 2M5BA 3IHDA 2UXEA 4BPJA 4ZIIA 4BD7A 4BPIA 5FDOA 4OQ5A 2BIDA 2V6QA 3IHCA 2WH6A 1PQ1A 3BL2A 1G5JA 1R2DA 2RODA 4ZIGA 4K5BC 4YK9A 3KJ2A 4BBBA 2IMTA 1AF3A 4UF3A 2IMSA 3DVUA 2VOGA 1Q59A 2O2FA 2VOHA 3KJ1A 2NLAA 4QNQA 1R2GA 1TY4A 4MI8A 4BBDA 2ROCA 4ZIEA 5IEZA 4S0PA 1OHUA 2LR1A 3D7VA 3IHEA 2O21A 2W3LA 5FMIA 2VM6A 1YSGA 5C6HA 4U2UA 4HW2A 2VVYA 4UF1A 2JCNA 4LQKA 1LXLA 3IO9A 4B4SA 3I1HA 2VOFA 2O2NA 2K36A 4D2MA 2VVXA 2A5YA 1YSIA 5KU9A 2BZWA 4HW3A 4U2VA 4OYDA 1R2EA 2JM6B 2VTYA 5IF4A 5C3FA 4WMRA 1R2HA 2NL9A 4BD6A 3KJ0A 2ME8A 2I39A 1ZY3A 3WIYA 1K3KA 4HW4A 4G35A 4BDUA 2MEJA 5KTGA 2XPXA 2VVWA 2KBWA 1BXLA 3KZ0A 1MAZA 3CVAX 4S0OA 4M0SA 4QVXA 1O0LA 3QBRA 2JBXA 4OQ6A 1GJHA 1YSNA 1YSWA 1G5MA 2JBYA 2ABOA 3ILCA 3JRVA 1WSXA 2O22A 4YJ4A 2MHSA 2B48A 3IIHA 2O42A 4ZBIA 1R2IA 4BD2A 4ZIHA 1DDBA 5FDRA 2KUAA 4ZBFA 2PQKA
chains in the Genus database with same CATH topology
2VOIA 4ZIFA 1MK3A 2K7WA 3MK8A 5FC4A 4BD8A 3IIGA 3PK1A 3WIXA 3MQPA 2YV6A 5JSBA 4ZEQA 2O2MA 1F16A 1PQ0A 2XA0A 2M5BA 3IHDA 4BPJA 4ZIIA 4BD7A 4BPIA 5FDOA 4OQ5A 2BIDA 2V6QA 3IHCA 2WH6A 1PQ1A 3BL2A 1G5JA 1R2DA 2RODA 4ZIGA 4K5BC 4YK9A 3KJ2A 2IMTA 1AF3A 2IMSA 3DVUA 2VOGA 1Q59A 2O2FA 2VOHA 3KJ1A 2NLAA 4QNQA 1R2GA 1TY4A 4MI8A 2ROCA 4ZIEA 5IEZA 4S0PA 1OHUA 2LR1A 3D7VA 3IHEA 2O21A 2W3LA 5FMIA 2VM6A 1YSGA 5C6HA 4U2UA 4HW2A 2JCNA 1LXLA 3IO9A 4B4SA 3I1HA 2VOFA 2O2NA 2A5YA 1YSIA 5KU9A 2BZWA 4HW3A 4U2VA 4OYDA 1R2EA 2JM6B 5IF4A 5C3FA 4WMRA 1R2HA 2NL9A 4BD6A 3KJ0A 2ME8A 1ZY3A 3WIYA 1K3KA 4HW4A 4G35A 4BDUA 2MEJA 5KTGA 2XPXA 2KBWA 1BXLA 3KZ0A 1MAZA 3CVAX 4S0OA 4QVXA 1O0LA 3QBRA 4OQ6A 1GJHA 1YSNA 1YSWA 1G5MA 2ABOA 3ILCA 1WSXA 2O22A 4YJ4A 2MHSA 2B48A 3IIHA 4ZBIA 1R2IA 4BD2A 4ZIHA 1DDBA 5FDRA 2KUAA 4ZBFA 2PQKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VOI A;  4ZIF A;  1MK3 A;  2K7W A;  3MK8 A;  5FC4 A;  4BD8 A;  3IIG A;  3PK1 A;  3WIX A;  3MQP A;  2YV6 A;  5JSB A;  4ZEQ A;  2O2M A;  1F16 A;  1PQ0 A;  2XA0 A;  2M5B A;  3IHD A;  4BPJ A;  4ZII A;  4BD7 A;  4BPI A;  5FDO A;  4OQ5 A;  2BID A;  2V6Q A;  3IHC A;  2WH6 A;  1PQ1 A;  3BL2 A;  1G5J A;  1R2D A;  2ROD A;  4ZIG A;  4K5B C;  4YK9 A;  3KJ2 A;  2IMT A;  1AF3 A;  2IMS A;  3DVU A;  2VOG A;  1Q59 A;  2O2F A;  2VOH A;  3KJ1 A;  2NLA A;  4QNQ A;  1R2G A;  1TY4 A;  4MI8 A;  2ROC A;  4ZIE A;  5IEZ A;  4S0P A;  1OHU A;  2LR1 A;  3D7V A;  3IHE A;  2O21 A;  2W3L A;  5FMI A;  2VM6 A;  1YSG A;  5C6H A;  4U2U A;  4HW2 A;  2JCN A;  1LXL A;  3IO9 A;  4B4S A;  3I1H A;  2VOF A;  2O2N A;  2A5Y A;  1YSI A;  5KU9 A;  2BZW A;  4HW3 A;  4U2V A;  4OYD A;  1R2E A;  2JM6 B;  5IF4 A;  5C3F A;  4WMR A;  1R2H A;  2NL9 A;  4BD6 A;  3KJ0 A;  2ME8 A;  1ZY3 A;  3WIY A;  1K3K A;  4HW4 A;  4G35 A;  4BDU A;  2MEJ A;  5KTG A;  2XPX A;  2KBW A;  1BXL A;  3KZ0 A;  1MAZ A;  3CVA X;  4S0O A;  4QVX A;  1O0L A;  3QBR A;  4OQ6 A;  1GJH A;  1YSN A;  1YSW A;  1G5M A;  2ABO A;  3ILC A;  1WSX A;  2O22 A;  4YJ4 A;  2MHS A;  2B48 A;  3IIH A;  4ZBI A;  1R2I A;  4BD2 A;  4ZIH A;  1DDB A;  5FDR A;  2KUA A;  4ZBF A;  2PQK A; 
#chains in the Genus database with same CATH topology
 2VOI A;  4ZIF A;  1MK3 A;  2K7W A;  3MK8 A;  5FC4 A;  4BD8 A;  4BBC A;  3IIG A;  3PK1 A;  3WIX A;  3MQP A;  2YV6 A;  4UF2 A;  5JSB A;  4D2L A;  4ZEQ A;  2O2M A;  1F16 A;  1PQ0 A;  2XA0 A;  2M5B A;  3IHD A;  2UXE A;  4BPJ A;  4ZII A;  4BD7 A;  4BPI A;  5FDO A;  4OQ5 A;  2BID A;  2V6Q A;  3IHC A;  2WH6 A;  1PQ1 A;  3BL2 A;  1G5J A;  1R2D A;  2ROD A;  4ZIG A;  4K5B C;  4YK9 A;  3KJ2 A;  4BBB A;  2IMT A;  1AF3 A;  4UF3 A;  2IMS A;  3DVU A;  2VOG A;  1Q59 A;  2O2F A;  2VOH A;  3KJ1 A;  2NLA A;  4QNQ A;  1R2G A;  1TY4 A;  4MI8 A;  4BBD A;  2ROC A;  4ZIE A;  5IEZ A;  4S0P A;  1OHU A;  2LR1 A;  3D7V A;  3IHE A;  2O21 A;  2W3L A;  5FMI A;  2VM6 A;  1YSG A;  5C6H A;  4U2U A;  4HW2 A;  2VVY A;  4UF1 A;  2JCN A;  4LQK A;  1LXL A;  3IO9 A;  4B4S A;  3I1H A;  2VOF A;  2O2N A;  2K36 A;  4D2M A;  2VVX A;  2A5Y A;  1YSI A;  5KU9 A;  2BZW A;  4HW3 A;  4U2V A;  4OYD A;  1R2E A;  2JM6 B;  2VTY A;  5IF4 A;  5C3F A;  4WMR A;  1R2H A;  2NL9 A;  4BD6 A;  3KJ0 A;  2ME8 A;  2I39 A;  1ZY3 A;  3WIY A;  1K3K A;  4HW4 A;  4G35 A;  4BDU A;  2MEJ A;  5KTG A;  2XPX A;  2VVW A;  2KBW A;  1BXL A;  3KZ0 A;  1MAZ A;  3CVA X;  4S0O A;  4M0S A;  4QVX A;  1O0L A;  3QBR A;  2JBX A;  4OQ6 A;  1GJH A;  1YSN A;  1YSW A;  1G5M A;  2JBY A;  2ABO A;  3ILC A;  3JRV A;  1WSX A;  2O22 A;  4YJ4 A;  2MHS A;  2B48 A;  3IIH A;  2O42 A;  4ZBI A;  1R2I A;  4BD2 A;  4ZIH A;  1DDB A;  5FDR A;  2KUA A;  4ZBF A;  2PQK A; 
#chains in the Genus database with same CATH homology
 2VOI A;  4ZIF A;  1MK3 A;  2K7W A;  3MK8 A;  5FC4 A;  4BD8 A;  3IIG A;  3PK1 A;  3WIX A;  3MQP A;  2YV6 A;  5JSB A;  4ZEQ A;  2O2M A;  1F16 A;  1PQ0 A;  2XA0 A;  2M5B A;  3IHD A;  4BPJ A;  4ZII A;  4BD7 A;  4BPI A;  5FDO A;  4OQ5 A;  2BID A;  2V6Q A;  3IHC A;  2WH6 A;  1PQ1 A;  3BL2 A;  1G5J A;  1R2D A;  2ROD A;  4ZIG A;  4K5B C;  4YK9 A;  3KJ2 A;  2IMT A;  1AF3 A;  2IMS A;  3DVU A;  2VOG A;  1Q59 A;  2O2F A;  2VOH A;  3KJ1 A;  2NLA A;  4QNQ A;  1R2G A;  1TY4 A;  4MI8 A;  2ROC A;  4ZIE A;  5IEZ A;  4S0P A;  1OHU A;  2LR1 A;  3D7V A;  3IHE A;  2O21 A;  2W3L A;  5FMI A;  2VM6 A;  1YSG A;  5C6H A;  4U2U A;  4HW2 A;  2JCN A;  1LXL A;  3IO9 A;  4B4S A;  3I1H A;  2VOF A;  2O2N A;  2A5Y A;  1YSI A;  5KU9 A;  2BZW A;  4HW3 A;  4U2V A;  4OYD A;  1R2E A;  2JM6 B;  5IF4 A;  5C3F A;  4WMR A;  1R2H A;  2NL9 A;  4BD6 A;  3KJ0 A;  2ME8 A;  1ZY3 A;  3WIY A;  1K3K A;  4HW4 A;  4G35 A;  4BDU A;  2MEJ A;  5KTG A;  2XPX A;  2KBW A;  1BXL A;  3KZ0 A;  1MAZ A;  3CVA X;  4S0O A;  4QVX A;  1O0L A;  3QBR A;  4OQ6 A;  1GJH A;  1YSN A;  1YSW A;  1G5M A;  2ABO A;  3ILC A;  1WSX A;  2O22 A;  4YJ4 A;  2MHS A;  2B48 A;  3IIH A;  4ZBI A;  1R2I A;  4BD2 A;  4ZIH A;  1DDB A;  5FDR A;  2KUA A;  4ZBF A;  2PQK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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