2XQNT

Complex of the 2nd and 3rd lim domains of tes with the evh1 domain of mena and the n-terminal domain of actin-like protein arp7a
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
125
structure length
125
Chain Sequence
EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRMS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Metal binding protein
molecule keywords ACTIN-LIKE PROTEIN 7A
publication title Molecular recognition of the Tes LIM2-3 domains by the actin-related protein Arp7A.
pubmed doi rcsb
source organism Homo sapiens
total genus 20
structure length 125
sequence length 125
ec nomenclature
pdb deposition date 2010-09-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
T PF00412 LIM LIM domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.110.10 Mainly Beta Ribbon Cysteine Rich Protein Cysteine Rich Protein 2xqnT02
2.10.110.10 Mainly Beta Ribbon Cysteine Rich Protein Cysteine Rich Protein 2xqnT01
1X62A 2YPAC 2D8YA 1CXXA 2IYBE 1A7IA 1X64A 2L6YB 1WIGA 1QLIA 3IXEB 2DLOA 2XJZA 1B8TA 2MBVA 2L4ZA 2D8XA 2O13A 1G47A 2LZUA 1X63A 1IBIA 2LXDA 2CO8A 4KFZA 2EGQA 2MIUA 4HI8B 1J2OA 2CUQA 2JTNA 2CUPA 2D8ZA 1X68A 2DARA 2CORA 4JCJA 4HI9B 3MMKA 2KBXB 1U5SB 2DJ7A 1WYHA 1NYPA 2CURA 1V6GA 2O10A 2DFYC 1RUTX 1X3HA 1IMLA 2EHEA 1CTLA 1M3VA 1X4LA 1X6AA 3F6QB 1X61A 2L6ZC 2CU8A 2XJYA 2XQNT
chains in the Genus database with same CATH superfamily
1X62A 3NISA 2L6YB 5LKUA 5FXWA 1QLIA 4EZ4A 3AVRA 2L4ZA 2LXDA 4KFZA 5FXVA 5FYMA 5LKTA 2DJ7A 1WYHA 1V6GA 2O10A 5FXZA 4EYUA 1RUTX 3NIHA 2L6ZC 3NIJA 2XJYA 2IYBE 3NIKA 2XJZA 1B8TA 2MBVA 2D8XA 1G47A 2EGQA 2CUQA 2D8ZA 4ASKA 2CORA 4HI9B 3MMKA 1NYPA 5FY0A 2EHEA 5A1LA 5LKZA 3NIMA 3F6QB 2CU8A 5FXXA 5LKXA 2D8YA 1A7IA 1X64A 5FP3A 1WIGA 2DLOA 4UF0A 1X63A 1IBIA 2CO8A 2MIUA 3NILA 5FY1A 4EZHA 1X68A 2DARA 4JCJA 2KBXB 1U5SB 2CURA 3NINA 3ZPOA 2XUEA 1X3HA 1IMLA 1CTLA 5FY7A 2XQNT 2YPAC 1CXXA 3IXEB 2O13A 2LZUA 4HI8B 1J2OA 4BHWA 2JTNA 2CUPA 4UF0B 2DFYC 3AVSA 1M3VA 1X4LA 1X6AA 1X61A 3ZLIA
chains in the Genus database with same CATH topology
1X62A 3NISA 2L6YB 5LKUA 5FXWA 1QLIA 4EZ4A 3AVRA 2L4ZA 2LXDA 4KFZA 5FXVA 5FYMA 5LKTA 2DJ7A 1WYHA 1V6GA 2O10A 5FXZA 4EYUA 1RUTX 3NIHA 2L6ZC 3NIJA 2XJYA 2IYBE 3NIKA 2XJZA 1B8TA 2MBVA 2D8XA 1G47A 2EGQA 2CUQA 2D8ZA 4ASKA 2CORA 4HI9B 3MMKA 1NYPA 5FY0A 2EHEA 5A1LA 5LKZA 3NIMA 3F6QB 2CU8A 5FXXA 5LKXA 2D8YA 1A7IA 1X64A 5FP3A 1WIGA 2DLOA 4UF0A 1X63A 1IBIA 2CO8A 2MIUA 3NILA 5FY1A 4EZHA 1X68A 2DARA 4JCJA 2KBXB 1U5SB 2CURA 3NINA 3ZPOA 2XUEA 1X3HA 1IMLA 1CTLA 5FY7A 2XQNT 2YPAC 1CXXA 3IXEB 2O13A 2LZUA 4HI8B 1J2OA 4BHWA 2JTNA 2CUPA 4UF0B 2DFYC 3AVSA 1M3VA 1X4LA 1X6AA 1X61A 3ZLIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1X62 A;  2YPA C;  2D8Y A;  1CXX A;  2IYB E;  1A7I A;  1X64 A;  2L6Y B;  1WIG A;  1QLI A;  3IXE B;  2DLO A;  2XJZ A;  1B8T A;  2MBV A;  2L4Z A;  2D8X A;  2O13 A;  1G47 A;  2LZU A;  1X63 A;  1IBI A;  2LXD A;  2CO8 A;  4KFZ A;  2EGQ A;  2MIU A;  4HI8 B;  1J2O A;  2CUQ A;  2JTN A;  2CUP A;  2D8Z A;  1X68 A;  2DAR A;  2COR A;  4JCJ A;  4HI9 B;  3MMK A;  2KBX B;  1U5S B;  2DJ7 A;  1WYH A;  1NYP A;  2CUR A;  1V6G A;  2O10 A;  2DFY C;  1RUT X;  1X3H A;  1IML A;  2EHE A;  1CTL A;  1M3V A;  1X4L A;  1X6A A;  3F6Q B;  1X61 A;  2L6Z C;  2CU8 A;  2XJY A;  2XQN T; 
#chains in the Genus database with same CATH topology
 1X62 A;  3NIS A;  2L6Y B;  5LKU A;  5FXW A;  1QLI A;  4EZ4 A;  3AVR A;  2L4Z A;  2LXD A;  4KFZ A;  5FXV A;  5FYM A;  5LKT A;  2DJ7 A;  1WYH A;  1V6G A;  2O10 A;  5FXZ A;  4EYU A;  1RUT X;  3NIH A;  2L6Z C;  3NIJ A;  2XJY A;  2IYB E;  3NIK A;  2XJZ A;  1B8T A;  2MBV A;  2D8X A;  1G47 A;  2EGQ A;  2CUQ A;  2D8Z A;  4ASK A;  2COR A;  4HI9 B;  3MMK A;  1NYP A;  5FY0 A;  2EHE A;  5A1L A;  5LKZ A;  3NIM A;  3F6Q B;  2CU8 A;  5FXX A;  5LKX A;  2D8Y A;  1A7I A;  1X64 A;  5FP3 A;  1WIG A;  2DLO A;  4UF0 A;  1X63 A;  1IBI A;  2CO8 A;  2MIU A;  3NIL A;  5FY1 A;  4EZH A;  1X68 A;  2DAR A;  4JCJ A;  2KBX B;  1U5S B;  2CUR A;  3NIN A;  3ZPO A;  2XUE A;  1X3H A;  1IML A;  1CTL A;  5FY7 A;  2XQN T;  2YPA C;  1CXX A;  3IXE B;  2O13 A;  2LZU A;  4HI8 B;  1J2O A;  4BHW A;  2JTN A;  2CUP A;  4UF0 B;  2DFY C;  3AVS A;  1M3V A;  1X4L A;  1X6A A;  1X61 A;  3ZLI A; 
#chains in the Genus database with same CATH homology
 1X62 A;  3NIS A;  2L6Y B;  5LKU A;  5FXW A;  1QLI A;  4EZ4 A;  3AVR A;  2L4Z A;  2LXD A;  4KFZ A;  5FXV A;  5FYM A;  5LKT A;  2DJ7 A;  1WYH A;  1V6G A;  2O10 A;  5FXZ A;  4EYU A;  1RUT X;  3NIH A;  2L6Z C;  3NIJ A;  2XJY A;  2IYB E;  3NIK A;  2XJZ A;  1B8T A;  2MBV A;  2D8X A;  1G47 A;  2EGQ A;  2CUQ A;  2D8Z A;  4ASK A;  2COR A;  4HI9 B;  3MMK A;  1NYP A;  5FY0 A;  2EHE A;  5A1L A;  5LKZ A;  3NIM A;  3F6Q B;  2CU8 A;  5FXX A;  5LKX A;  2D8Y A;  1A7I A;  1X64 A;  5FP3 A;  1WIG A;  2DLO A;  4UF0 A;  1X63 A;  1IBI A;  2CO8 A;  2MIU A;  3NIL A;  5FY1 A;  4EZH A;  1X68 A;  2DAR A;  4JCJ A;  2KBX B;  1U5S B;  2CUR A;  3NIN A;  3ZPO A;  2XUE A;  1X3H A;  1IML A;  1CTL A;  5FY7 A;  2XQN T;  2YPA C;  1CXX A;  3IXE B;  2O13 A;  2LZU A;  4HI8 B;  1J2O A;  4BHW A;  2JTN A;  2CUP A;  4UF0 B;  2DFY C;  3AVS A;  1M3V A;  1X4L A;  1X6A A;  1X61 A;  3ZLI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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