2XR7A

Crystal structure of nicotiana tabacum malonyltransferase (ntmat1) complexed with malonyl-coa
Total Genus 111
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
111
sequence length
452
structure length
452
Chain Sequence
ASVIEQCQVVPSPGSATELTLPLTYFDHVWLAFHRMRRILFYKLPISRPDFVQTIIPTLKDSLSLTLKYYLPLAGNVACPQDWSGYPELRYVTGNSVSVIFSESDMDFNYLIGYHPRNTKDFYHFVPQLAEPKDAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVAGDGATIVKFVRAWALLNKFGGDEQFLANEFIPFYDRSVIKDPNGVGMSIWNEMKKYKHMMKMSDVVTPPDKVRGTFIITRHDIGKLKNLVLTRRPKLTHVTSFTVTCAYVWTCIIKSEAATGEEIDENGMEFFGCAADCRAQFNPPLPPSYFGNALVGYVARTRQVDLAGKEGFTIAVELIGEAIRKRMKDEEWILSGSWFKEYDKVDAKRSLSVAGSPKLDLYAADFGWGRPEKLEFVSIDNDDGISMSLSKSKDSDGDLEIGLSLSKTRMNAFAAMFTHGISFL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords MALONYLTRANSFERASE
publication title Structural Basis for Modification of Flavonol and Naphthol Glucoconjugates by Nicotiana Tabacum Malonyltransferase (Ntmat1).
pubmed doi rcsb
total genus 111
structure length 452
sequence length 452
ec nomenclature ec 2.3.1.116: Flavonol-3-O-beta-glucoside O-malonyltransferase.
pdb deposition date 2010-09-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02458 Transferase Transferase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 2xr7A02
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 2xr7A01
2E1UA 2VSQA 3L60A 4JN3A 5KJUA 4G22A 3U9BA 3B30A 1DPDA 4KE4A 1CLAA 2XR7A 5DU9A 2IHWA 4HVMA 2II5A 2CLAA 1EADA 4CLAA 2E1VA 1E2OA 3FOTA 1NOCB 2JGPA 2RKTA 1SCZA 3B2SA 1Q9JA 4N72A 5KJSA 5KJTA 1XL8A 2ZBAA 4G2MA 5T3EA 1CIAA 5FALA 1PD5A 1XL7A 1XMDA 2BGHA 2XHGA 4G0BA 2I9DA 3CLAA 5FANA 5KJVA 1EABA 2RKVA 3FP0A 4JN5A 5DUAA 1DPCA 1L5AA 1DPBA 2E1TA 1EACA 4KECA 1EAAA 1EAEA 2II3A 3MAEA 3U9FA 2II4A 1XMCA 1QCAA 5KJWA 1C4TA 1Q23A 1EAFA
chains in the Genus database with same CATH superfamily
5KJUA 2IHWA 2II5A 1EADA 3FOTA 2JGPA 3B2SA 1NDIA 1T1UA 2RCUA 2ZBAA 1CIAA 4EYWA 3CLAA 5FANA 5KJVA 3FP0A 1DPCA 1DPBA 1EAEA 3MAEA 1T7QA 1NDFA 1T7OA 1XMDA 2FW3A 4G22A 3U9BA 1DPDA 1S5OA 4CLAA 1SCZA 1Q9JA 4N72A 1XL8A 4G2MA 1Q6XA 1XL7A 2FY2A 1T7NA 4JN5A 1EACA 2II4A 1Q23A 1EAFA 2H3WA 3B30A 4KE4A 1CLAA 5DU9A 2CLAA 2E1VA 1E2OA 1NOCB 2FY4A 4EPHA 5KJSA 5KJTA 2H4TA 5FALA 4EP9A 2BGHA 2H3PA 2FY5A 1EABA 1L5AA 4KECA 1NM8A 1QCAA 4HVMA 2RKVA 2E1UA 2VSQA 3L60A 4JN3A 2XR7A 2FY3A 1NDBA 2RKTA 5T3EA 1PD5A 2XHGA 4G0BA 2FYOA 2I9DA 5DUAA 2DEBA 2E1TA 1EAAA 2II3A 3U9FA 2H3UA 1XMCA 5KJWA 1C4TA
chains in the Genus database with same CATH topology
2E1UA 2VSQA 3L60A 4JN3A 5KJUA 4G22A 3U9BA 3B30A 1DPDA 4KE4A 1CLAA 2XR7A 5DU9A 2IHWA 4HVMA 2II5A 2CLAA 1EADA 4CLAA 2E1VA 1E2OA 3FOTA 1NOCB 2JGPA 2RKTA 1SCZA 3B2SA 1Q9JA 4N72A 5KJSA 5KJTA 1XL8A 2ZBAA 4G2MA 5T3EA 1CIAA 5FALA 1PD5A 1XL7A 1XMDA 2BGHA 2XHGA 4G0BA 2I9DA 3CLAA 5FANA 5KJVA 1EABA 2RKVA 3FP0A 4JN5A 5DUAA 1DPCA 1L5AA 1DPBA 2E1TA 1EACA 4KECA 1EAAA 1EAEA 2II3A 3MAEA 3U9FA 2II4A 1XMCA 1QCAA 5KJWA 1C4TA 1Q23A 1EAFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E1U A;  2VSQ A;  3L60 A;  4JN3 A;  5KJU A;  4G22 A;  3U9B A;  3B30 A;  1DPD A;  4KE4 A;  1CLA A;  2XR7 A;  5DU9 A;  2IHW A;  4HVM A;  2II5 A;  2CLA A;  1EAD A;  4CLA A;  2E1V A;  1E2O A;  3FOT A;  1NOC B;  2JGP A;  2RKT A;  1SCZ A;  3B2S A;  1Q9J A;  4N72 A;  5KJS A;  5KJT A;  1XL8 A;  2ZBA A;  4G2M A;  5T3E A;  1CIA A;  5FAL A;  1PD5 A;  1XL7 A;  1XMD A;  2BGH A;  2XHG A;  4G0B A;  2I9D A;  3CLA A;  5FAN A;  5KJV A;  1EAB A;  2RKV A;  3FP0 A;  4JN5 A;  5DUA A;  1DPC A;  1L5A A;  1DPB A;  2E1T A;  1EAC A;  4KEC A;  1EAA A;  1EAE A;  2II3 A;  3MAE A;  3U9F A;  2II4 A;  1XMC A;  1QCA A;  5KJW A;  1C4T A;  1Q23 A;  1EAF A; 
#chains in the Genus database with same CATH topology
 5KJU A;  2IHW A;  2II5 A;  1EAD A;  3FOT A;  2JGP A;  3B2S A;  1NDI A;  1T1U A;  2RCU A;  2ZBA A;  1CIA A;  4EYW A;  3CLA A;  5FAN A;  5KJV A;  3FP0 A;  1DPC A;  1DPB A;  1EAE A;  3MAE A;  1T7Q A;  1NDF A;  1T7O A;  1XMD A;  2FW3 A;  4G22 A;  3U9B A;  1DPD A;  1S5O A;  4CLA A;  1SCZ A;  1Q9J A;  4N72 A;  1XL8 A;  4G2M A;  1Q6X A;  1XL7 A;  2FY2 A;  1T7N A;  4JN5 A;  1EAC A;  2II4 A;  1Q23 A;  1EAF A;  2H3W A;  3B30 A;  4KE4 A;  1CLA A;  5DU9 A;  2CLA A;  2E1V A;  1E2O A;  1NOC B;  2FY4 A;  4EPH A;  5KJS A;  5KJT A;  2H4T A;  5FAL A;  4EP9 A;  2BGH A;  2H3P A;  2FY5 A;  1EAB A;  1L5A A;  4KEC A;  1NM8 A;  1QCA A;  4HVM A;  2RKV A;  2E1U A;  2VSQ A;  3L60 A;  4JN3 A;  2XR7 A;  2FY3 A;  1NDB A;  2RKT A;  5T3E A;  1PD5 A;  2XHG A;  4G0B A;  2FYO A;  2I9D A;  5DUA A;  2DEB A;  2E1T A;  1EAA A;  2II3 A;  3U9F A;  2H3U A;  1XMC A;  5KJW A;  1C4T A; 
#chains in the Genus database with same CATH homology
 2E1U A;  2VSQ A;  3L60 A;  4JN3 A;  5KJU A;  4G22 A;  3U9B A;  3B30 A;  1DPD A;  4KE4 A;  1CLA A;  2XR7 A;  5DU9 A;  2IHW A;  4HVM A;  2II5 A;  2CLA A;  1EAD A;  4CLA A;  2E1V A;  1E2O A;  3FOT A;  1NOC B;  2JGP A;  2RKT A;  1SCZ A;  3B2S A;  1Q9J A;  4N72 A;  5KJS A;  5KJT A;  1XL8 A;  2ZBA A;  4G2M A;  5T3E A;  1CIA A;  5FAL A;  1PD5 A;  1XL7 A;  1XMD A;  2BGH A;  2XHG A;  4G0B A;  2I9D A;  3CLA A;  5FAN A;  5KJV A;  1EAB A;  2RKV A;  3FP0 A;  4JN5 A;  5DUA A;  1DPC A;  1L5A A;  1DPB A;  2E1T A;  1EAC A;  4KEC A;  1EAA A;  1EAE A;  2II3 A;  3MAE A;  3U9F A;  2II4 A;  1XMC A;  1QCA A;  5KJW A;  1C4T A;  1Q23 A;  1EAF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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