2XR7A

Crystal structure of nicotiana tabacum malonyltransferase (ntmat1) complexed with malonyl-coa
Total Genus 111
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
111
sequence length
452
structure length
452
Chain Sequence
ASVIEQCQVVPSPGSATELTLPLTYFDHVWLAFHRMRRILFYKLPISRPDFVQTIIPTLKDSLSLTLKYYLPLAGNVACPQDWSGYPELRYVTGNSVSVIFSESDMDFNYLIGYHPRNTKDFYHFVPQLAEPKDAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVAGDGATIVKFVRAWALLNKFGGDEQFLANEFIPFYDRSVIKDPNGVGMSIWNEMKKYKHMMKMSDVVTPPDKVRGTFIITRHDIGKLKNLVLTRRPKLTHVTSFTVTCAYVWTCIIKSEAATGEEIDENGMEFFGCAADCRAQFNPPLPPSYFGNALVGYVARTRQVDLAGKEGFTIAVELIGEAIRKRMKDEEWILSGSWFKEYDKVDAKRSLSVAGSPKLDLYAADFGWGRPEKLEFVSIDNDDGISMSLSKSKDSDGDLEIGLSLSKTRMNAFAAMFTHGISFL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords MALONYLTRANSFERASE
publication title Structural Basis for Modification of Flavonol and Naphthol Glucoconjugates by Nicotiana Tabacum Malonyltransferase (Ntmat1).
pubmed doi rcsb
total genus 111
structure length 452
sequence length 452
ec nomenclature ec 2.3.1.116: Flavonol-3-O-beta-glucoside O-malonyltransferase.
pdb deposition date 2010-09-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02458 Transferase Transferase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 2xr7A02
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 2xr7A01
4G2MA 4KE4A 1DPBA 1EABA 5FANA 3MAEA 3U9BA 2E1VA 1XMDA 3L60A 1C4TA 2CLAA 3B30A 1E2OA 1CIAA 1EAEA 3CLAA 4N72A 1EACA 3FP0A 2I9DA 4CLAA 3FOTA 4KECA 5KJSA 5T3EA 2II5A 1EAAA 5DUAA 1XL7A 2IHWA 2VSQA 2ZBAA 5FALA 5KJVA 1EAFA 1CLAA 5KJTA 5KJWA 1Q9JA 1XL8A 2RKTA 4G22A 4G0BA 1XMCA 2II3A 4JN3A 5DU9A 1PD5A 1L5AA 1Q23A 4HVMA 2JGPA 2XR7A 2BGHA 1EADA 2E1UA 2XHGA 1DPCA 3B2SA 1DPDA 5KJUA 4JN5A 1QCAA 2II4A 2E1TA 2RKVA 1SCZA 3U9FA 1NOCB
chains in the Genus database with same CATH superfamily
4G2MA 5FANA 1Q6XA 1C4TA 1CIAA 3FP0A 2I9DA 1EAAA 1XL7A 1NDBA 2RCUA 5KJTA 5KJWA 4G22A 4HVMA 2JGPA 1DPCA 4JN5A 2H3UA 2II4A 2FYOA 4EYWA 1NM8A 3U9BA 4KECA 2FY3A 2IHWA 2VSQA 2ZBAA 1CLAA 2FY2A 1XL8A 2RKTA 2II3A 2DEBA 5DU9A 1PD5A 2XR7A 2BGHA 2E1UA 3B2SA 1T7QA 1SCZA 1Q23A 4KE4A 1DPBA 1EABA 2E1VA 1XMDA 4EPHA 3B30A 1EAEA 1NDIA 4CLAA 4N72A 1EACA 5KJSA 5T3EA 2II5A 5DUAA 2H3WA 5KJVA 1XMCA 1L5AA 2FY4A 1EADA 1T7NA 2FY5A 2E1TA 4EP9A 4G0BA 3MAEA 1T1UA 3L60A 2CLAA 1E2OA 3CLAA 3FOTA 2FW3A 5FALA 2H3PA 1EAFA 1Q9JA 4JN3A 1NDFA 2XHGA 2H4TA 1DPDA 5KJUA 1T7OA 1QCAA 2RKVA 1S5OA 3U9FA 1NOCB
chains in the Genus database with same CATH topology
4G2MA 4KE4A 1DPBA 1EABA 5FANA 3MAEA 3U9BA 2E1VA 1XMDA 3L60A 1C4TA 2CLAA 3B30A 1E2OA 1CIAA 1EAEA 3CLAA 4N72A 1EACA 3FP0A 2I9DA 4CLAA 3FOTA 4KECA 5KJSA 5T3EA 2II5A 1EAAA 5DUAA 1XL7A 2IHWA 2VSQA 2ZBAA 5FALA 5KJVA 1EAFA 1CLAA 5KJTA 5KJWA 1Q9JA 1XL8A 2RKTA 4G22A 4G0BA 1XMCA 2II3A 4JN3A 5DU9A 1PD5A 1L5AA 1Q23A 4HVMA 2JGPA 2XR7A 2BGHA 1EADA 2E1UA 2XHGA 1DPCA 3B2SA 1DPDA 5KJUA 4JN5A 1QCAA 2II4A 2E1TA 2RKVA 1SCZA 3U9FA 1NOCB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4G2M A;  4KE4 A;  1DPB A;  1EAB A;  5FAN A;  3MAE A;  3U9B A;  2E1V A;  1XMD A;  3L60 A;  1C4T A;  2CLA A;  3B30 A;  1E2O A;  1CIA A;  1EAE A;  3CLA A;  4N72 A;  1EAC A;  3FP0 A;  2I9D A;  4CLA A;  3FOT A;  4KEC A;  5KJS A;  5T3E A;  2II5 A;  1EAA A;  5DUA A;  1XL7 A;  2IHW A;  2VSQ A;  2ZBA A;  5FAL A;  5KJV A;  1EAF A;  1CLA A;  5KJT A;  5KJW A;  1Q9J A;  1XL8 A;  2RKT A;  4G22 A;  4G0B A;  1XMC A;  2II3 A;  4JN3 A;  5DU9 A;  1PD5 A;  1L5A A;  1Q23 A;  4HVM A;  2JGP A;  2XR7 A;  2BGH A;  1EAD A;  2E1U A;  2XHG A;  1DPC A;  3B2S A;  1DPD A;  5KJU A;  4JN5 A;  1QCA A;  2II4 A;  2E1T A;  2RKV A;  1SCZ A;  3U9F A;  1NOC B; 
#chains in the Genus database with same CATH topology
 4G2M A;  5FAN A;  1Q6X A;  1C4T A;  1CIA A;  3FP0 A;  2I9D A;  1EAA A;  1XL7 A;  1NDB A;  2RCU A;  5KJT A;  5KJW A;  4G22 A;  4HVM A;  2JGP A;  1DPC A;  4JN5 A;  2H3U A;  2II4 A;  2FYO A;  4EYW A;  1NM8 A;  3U9B A;  4KEC A;  2FY3 A;  2IHW A;  2VSQ A;  2ZBA A;  1CLA A;  2FY2 A;  1XL8 A;  2RKT A;  2II3 A;  2DEB A;  5DU9 A;  1PD5 A;  2XR7 A;  2BGH A;  2E1U A;  3B2S A;  1T7Q A;  1SCZ A;  1Q23 A;  4KE4 A;  1DPB A;  1EAB A;  2E1V A;  1XMD A;  4EPH A;  3B30 A;  1EAE A;  1NDI A;  4CLA A;  4N72 A;  1EAC A;  5KJS A;  5T3E A;  2II5 A;  5DUA A;  2H3W A;  5KJV A;  1XMC A;  1L5A A;  2FY4 A;  1EAD A;  1T7N A;  2FY5 A;  2E1T A;  4EP9 A;  4G0B A;  3MAE A;  1T1U A;  3L60 A;  2CLA A;  1E2O A;  3CLA A;  3FOT A;  2FW3 A;  5FAL A;  2H3P A;  1EAF A;  1Q9J A;  4JN3 A;  1NDF A;  2XHG A;  2H4T A;  1DPD A;  5KJU A;  1T7O A;  1QCA A;  2RKV A;  1S5O A;  3U9F A;  1NOC B; 
#chains in the Genus database with same CATH homology
 4G2M A;  4KE4 A;  1DPB A;  1EAB A;  5FAN A;  3MAE A;  3U9B A;  2E1V A;  1XMD A;  3L60 A;  1C4T A;  2CLA A;  3B30 A;  1E2O A;  1CIA A;  1EAE A;  3CLA A;  4N72 A;  1EAC A;  3FP0 A;  2I9D A;  4CLA A;  3FOT A;  4KEC A;  5KJS A;  5T3E A;  2II5 A;  1EAA A;  5DUA A;  1XL7 A;  2IHW A;  2VSQ A;  2ZBA A;  5FAL A;  5KJV A;  1EAF A;  1CLA A;  5KJT A;  5KJW A;  1Q9J A;  1XL8 A;  2RKT A;  4G22 A;  4G0B A;  1XMC A;  2II3 A;  4JN3 A;  5DU9 A;  1PD5 A;  1L5A A;  1Q23 A;  4HVM A;  2JGP A;  2XR7 A;  2BGH A;  1EAD A;  2E1U A;  2XHG A;  1DPC A;  3B2S A;  1DPD A;  5KJU A;  4JN5 A;  1QCA A;  2II4 A;  2E1T A;  2RKV A;  1SCZ A;  3U9F A;  1NOC B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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