2XR7A

Crystal structure of nicotiana tabacum malonyltransferase (ntmat1) complexed with malonyl-coa
Total Genus 111
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
111
sequence length
452
structure length
452
Chain Sequence
ASVIEQCQVVPSPGSATELTLPLTYFDHVWLAFHRMRRILFYKLPISRPDFVQTIIPTLKDSLSLTLKYYLPLAGNVACPQDWSGYPELRYVTGNSVSVIFSESDMDFNYLIGYHPRNTKDFYHFVPQLAEPKDAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVAGDGATIVKFVRAWALLNKFGGDEQFLANEFIPFYDRSVIKDPNGVGMSIWNEMKKYKHMMKMSDVVTPPDKVRGTFIITRHDIGKLKNLVLTRRPKLTHVTSFTVTCAYVWTCIIKSEAATGEEIDENGMEFFGCAADCRAQFNPPLPPSYFGNALVGYVARTRQVDLAGKEGFTIAVELIGEAIRKRMKDEEWILSGSWFKEYDKVDAKRSLSVAGSPKLDLYAADFGWGRPEKLEFVSIDNDDGISMSLSKSKDSDGDLEIGLSLSKTRMNAFAAMFTHGISFL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords MALONYLTRANSFERASE
publication title Structural Basis for Modification of Flavonol and Naphthol Glucoconjugates by Nicotiana Tabacum Malonyltransferase (Ntmat1).
pubmed doi rcsb
molecule tags Transferase
total genus 111
structure length 452
sequence length 452
ec nomenclature ec 2.3.1.116: Flavonol-3-O-beta-glucoside O-malonyltransferase.
pdb deposition date 2010-09-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02458 Transferase Transferase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 2xr7A02
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 2xr7A01
1DPBA 3MAEA 1C4TA 2BGHA 2XR7A 2ZBAA 4CLAA 1Q23A 1XL7A 3L60A 1CLAA 4G2MA 1L5AA 4G0BA 5KJTA 3CLAA 4JN3A 1EACA 2IHWA 1EAAA 1EADA 1NOCB 5KJSA 5T3EA 1PD5A 1SCZA 1QCAA 4JN5A 4N72A 1EAEA 2E1TA 2E1VA 4KECA 3U9FA 5KJWA 4KE4A 1CIAA 5FALA 3FP0A 1EAFA 2II5A 1XL8A 2E1UA 5DUAA 2RKTA 5KJVA 1XMDA 2VSQA 3B30A 4G22A 2II3A 2I9DA 2RKVA 5DU9A 5FANA 1DPDA 4HVMA 1XMCA 2II4A 5KJUA 2CLAA 3FOTA 1EABA 2XHGA 1E2OA 3B2SA 1Q9JA 1DPCA 2JGPA 3U9BA
chains in the Genus database with same CATH superfamily
3MAEA 3L60A 1L5AA 4G0BA 4EYWA 1EAAA 2FY2A 1SCZA 1QCAA 4N72A 2RCUA 1EAEA 3U9FA 5FALA 1S5OA 2E1UA 5KJVA 2FY5A 3B30A 5DU9A 1DPDA 2H4TA 1E2OA 1DPCA 2H3WA 3U9BA 2ZBAA 4CLAA 1Q23A 2FYOA 1CLAA 4G2MA 5KJTA 3CLAA 4JN3A 2IHWA 1NOCB 2E1TA 4KE4A 2FY3A 1T7QA 1XL8A 5DUAA 2RKTA 1XMDA 2VSQA 1Q6XA 4G22A 4HVMA 1XMCA 2II4A 2JGPA 2H3PA 1DPBA 1C4TA 2BGHA 2XR7A 2H3UA 5KJSA 4JN5A 1NDFA 1EAFA 2II5A 1T1UA 1NDBA 2I9DA 2RKVA 1T7NA 5KJUA 2CLAA 1EABA 3B2SA 1XL7A 4EPHA 1NM8A 1EACA 1EADA 5T3EA 1PD5A 2FY4A 2E1VA 4KECA 5KJWA 1CIAA 2FW3A 3FP0A 2II3A 5FANA 1NDIA 2DEBA 1T7OA 4EP9A 3FOTA 2XHGA 1Q9JA
chains in the Genus database with same CATH topology
1DPBA 3MAEA 1C4TA 2BGHA 2XR7A 2ZBAA 4CLAA 1Q23A 1XL7A 3L60A 1CLAA 4G2MA 1L5AA 4G0BA 5KJTA 3CLAA 4JN3A 1EACA 2IHWA 1EAAA 1EADA 1NOCB 5KJSA 5T3EA 1PD5A 1SCZA 1QCAA 4JN5A 4N72A 1EAEA 2E1TA 2E1VA 4KECA 3U9FA 5KJWA 4KE4A 1CIAA 5FALA 3FP0A 1EAFA 2II5A 1XL8A 2E1UA 5DUAA 2RKTA 5KJVA 1XMDA 2VSQA 3B30A 4G22A 2II3A 2I9DA 2RKVA 5DU9A 5FANA 1DPDA 4HVMA 1XMCA 2II4A 5KJUA 2CLAA 3FOTA 1EABA 2XHGA 1E2OA 3B2SA 1Q9JA 1DPCA 2JGPA 3U9BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DPB A;  3MAE A;  1C4T A;  2BGH A;  2XR7 A;  2ZBA A;  4CLA A;  1Q23 A;  1XL7 A;  3L60 A;  1CLA A;  4G2M A;  1L5A A;  4G0B A;  5KJT A;  3CLA A;  4JN3 A;  1EAC A;  2IHW A;  1EAA A;  1EAD A;  1NOC B;  5KJS A;  5T3E A;  1PD5 A;  1SCZ A;  1QCA A;  4JN5 A;  4N72 A;  1EAE A;  2E1T A;  2E1V A;  4KEC A;  3U9F A;  5KJW A;  4KE4 A;  1CIA A;  5FAL A;  3FP0 A;  1EAF A;  2II5 A;  1XL8 A;  2E1U A;  5DUA A;  2RKT A;  5KJV A;  1XMD A;  2VSQ A;  3B30 A;  4G22 A;  2II3 A;  2I9D A;  2RKV A;  5DU9 A;  5FAN A;  1DPD A;  4HVM A;  1XMC A;  2II4 A;  5KJU A;  2CLA A;  3FOT A;  1EAB A;  2XHG A;  1E2O A;  3B2S A;  1Q9J A;  1DPC A;  2JGP A;  3U9B A; 
#chains in the Genus database with same CATH topology
 3MAE A;  3L60 A;  1L5A A;  4G0B A;  4EYW A;  1EAA A;  2FY2 A;  1SCZ A;  1QCA A;  4N72 A;  2RCU A;  1EAE A;  3U9F A;  5FAL A;  1S5O A;  2E1U A;  5KJV A;  2FY5 A;  3B30 A;  5DU9 A;  1DPD A;  2H4T A;  1E2O A;  1DPC A;  2H3W A;  3U9B A;  2ZBA A;  4CLA A;  1Q23 A;  2FYO A;  1CLA A;  4G2M A;  5KJT A;  3CLA A;  4JN3 A;  2IHW A;  1NOC B;  2E1T A;  4KE4 A;  2FY3 A;  1T7Q A;  1XL8 A;  5DUA A;  2RKT A;  1XMD A;  2VSQ A;  1Q6X A;  4G22 A;  4HVM A;  1XMC A;  2II4 A;  2JGP A;  2H3P A;  1DPB A;  1C4T A;  2BGH A;  2XR7 A;  2H3U A;  5KJS A;  4JN5 A;  1NDF A;  1EAF A;  2II5 A;  1T1U A;  1NDB A;  2I9D A;  2RKV A;  1T7N A;  5KJU A;  2CLA A;  1EAB A;  3B2S A;  1XL7 A;  4EPH A;  1NM8 A;  1EAC A;  1EAD A;  5T3E A;  1PD5 A;  2FY4 A;  2E1V A;  4KEC A;  5KJW A;  1CIA A;  2FW3 A;  3FP0 A;  2II3 A;  5FAN A;  1NDI A;  2DEB A;  1T7O A;  4EP9 A;  3FOT A;  2XHG A;  1Q9J A; 
#chains in the Genus database with same CATH homology
 1DPB A;  3MAE A;  1C4T A;  2BGH A;  2XR7 A;  2ZBA A;  4CLA A;  1Q23 A;  1XL7 A;  3L60 A;  1CLA A;  4G2M A;  1L5A A;  4G0B A;  5KJT A;  3CLA A;  4JN3 A;  1EAC A;  2IHW A;  1EAA A;  1EAD A;  1NOC B;  5KJS A;  5T3E A;  1PD5 A;  1SCZ A;  1QCA A;  4JN5 A;  4N72 A;  1EAE A;  2E1T A;  2E1V A;  4KEC A;  3U9F A;  5KJW A;  4KE4 A;  1CIA A;  5FAL A;  3FP0 A;  1EAF A;  2II5 A;  1XL8 A;  2E1U A;  5DUA A;  2RKT A;  5KJV A;  1XMD A;  2VSQ A;  3B30 A;  4G22 A;  2II3 A;  2I9D A;  2RKV A;  5DU9 A;  5FAN A;  1DPD A;  4HVM A;  1XMC A;  2II4 A;  5KJU A;  2CLA A;  3FOT A;  1EAB A;  2XHG A;  1E2O A;  3B2S A;  1Q9J A;  1DPC A;  2JGP A;  3U9B A; 
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similar chains in the Genus database (?% sequence similarity)
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