2XR7A

Crystal structure of nicotiana tabacum malonyltransferase (ntmat1) complexed with malonyl-coa
Total Genus 111
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
111
sequence length
452
structure length
452
Chain Sequence
ASVIEQCQVVPSPGSATELTLPLTYFDHVWLAFHRMRRILFYKLPISRPDFVQTIIPTLKDSLSLTLKYYLPLAGNVACPQDWSGYPELRYVTGNSVSVIFSESDMDFNYLIGYHPRNTKDFYHFVPQLAEPKDAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVAGDGATIVKFVRAWALLNKFGGDEQFLANEFIPFYDRSVIKDPNGVGMSIWNEMKKYKHMMKMSDVVTPPDKVRGTFIITRHDIGKLKNLVLTRRPKLTHVTSFTVTCAYVWTCIIKSEAATGEEIDENGMEFFGCAADCRAQFNPPLPPSYFGNALVGYVARTRQVDLAGKEGFTIAVELIGEAIRKRMKDEEWILSGSWFKEYDKVDAKRSLSVAGSPKLDLYAADFGWGRPEKLEFVSIDNDDGISMSLSKSKDSDGDLEIGLSLSKTRMNAFAAMFTHGISFL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords MALONYLTRANSFERASE
publication title Structural Basis for Modification of Flavonol and Naphthol Glucoconjugates by Nicotiana Tabacum Malonyltransferase (Ntmat1).
pubmed doi rcsb
molecule tags Transferase
total genus 111
structure length 452
sequence length 452
ec nomenclature ec 2.3.1.116: Flavonol-3-O-beta-glucoside O-malonyltransferase.
pdb deposition date 2010-09-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02458 Transferase Transferase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 2xr7A02
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 2xr7A01
1DPCA 1EAAA 1EAFA 2XHGA 1DPBA 1EADA 3FOTA 1NOCB 3L60A 4KECA 5KJSA 2BGHA 2RKTA 2E1VA 4JN3A 3B2SA 3FP0A 1PD5A 2E1UA 4G0BA 2VSQA 4G2MA 4KE4A 3U9FA 4G22A 4HVMA 5FALA 1XL7A 5FANA 2II3A 5T3EA 2JGPA 5DUAA 1XL8A 2I9DA 2RKVA 3MAEA 2II4A 5DU9A 1QCAA 4JN5A 1SCZA 2E1TA 3B30A 1CLAA 1CIAA 1E2OA 5KJUA 1Q23A 2CLAA 1DPDA 1L5AA 3CLAA 4CLAA 2IHWA 5KJWA 1XMDA 1EAEA 1XMCA 5KJTA 2II5A 2ZBAA 3U9BA 2XR7A 1EACA 1EABA 1Q9JA 5KJVA 4N72A 1C4TA
chains in the Genus database with same CATH superfamily
1NDIA 2FY4A 1EAAA 1EAFA 1NOCB 3B2SA 1PD5A 4G0BA 4G2MA 1S5OA 1T7OA 4JN5A 2E1TA 1DPDA 1XMDA 1XMCA 2II5A 3U9BA 1Q9JA 5DU9A 1DPCA 1T7NA 1DPBA 3FOTA 5KJSA 2RKTA 2E1VA 2VSQA 1NM8A 2FY2A 3U9FA 4HVMA 2II3A 2H4TA 1XL8A 3MAEA 2II4A 3B30A 1T1UA 1CIAA 1E2OA 5KJUA 2CLAA 3CLAA 2ZBAA 4EP9A 1EACA 1EABA 4N72A 1Q6XA 3L60A 2FY3A 4JN3A 2FW3A 3FP0A 5FALA 4G22A 1NDFA 1XL7A 5T3EA 2JGPA 2RKVA 4EPHA 1QCAA 1NDBA 1SCZA 1CLAA 1L5AA 2IHWA 2H3PA 5KJTA 2XR7A 2XHGA 4KECA 1EADA 2BGHA 2DEBA 2FY5A 2E1UA 4KE4A 4EYWA 5FANA 5DUAA 2I9DA 2H3WA 1T7QA 2H3UA 1Q23A 4CLAA 5KJWA 1EAEA 2RCUA 2FYOA 5KJVA 1C4TA
chains in the Genus database with same CATH topology
1DPCA 1EAAA 1EAFA 2XHGA 1DPBA 1EADA 3FOTA 1NOCB 3L60A 4KECA 5KJSA 2BGHA 2RKTA 2E1VA 4JN3A 3B2SA 3FP0A 1PD5A 2E1UA 4G0BA 2VSQA 4G2MA 4KE4A 3U9FA 4G22A 4HVMA 5FALA 1XL7A 5FANA 2II3A 5T3EA 2JGPA 5DUAA 1XL8A 2I9DA 2RKVA 3MAEA 2II4A 5DU9A 1QCAA 4JN5A 1SCZA 2E1TA 3B30A 1CLAA 1CIAA 1E2OA 5KJUA 1Q23A 2CLAA 1DPDA 1L5AA 3CLAA 4CLAA 2IHWA 5KJWA 1XMDA 1EAEA 1XMCA 5KJTA 2II5A 2ZBAA 3U9BA 2XR7A 1EACA 1EABA 1Q9JA 5KJVA 4N72A 1C4TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DPC A;  1EAA A;  1EAF A;  2XHG A;  1DPB A;  1EAD A;  3FOT A;  1NOC B;  3L60 A;  4KEC A;  5KJS A;  2BGH A;  2RKT A;  2E1V A;  4JN3 A;  3B2S A;  3FP0 A;  1PD5 A;  2E1U A;  4G0B A;  2VSQ A;  4G2M A;  4KE4 A;  3U9F A;  4G22 A;  4HVM A;  5FAL A;  1XL7 A;  5FAN A;  2II3 A;  5T3E A;  2JGP A;  5DUA A;  1XL8 A;  2I9D A;  2RKV A;  3MAE A;  2II4 A;  5DU9 A;  1QCA A;  4JN5 A;  1SCZ A;  2E1T A;  3B30 A;  1CLA A;  1CIA A;  1E2O A;  5KJU A;  1Q23 A;  2CLA A;  1DPD A;  1L5A A;  3CLA A;  4CLA A;  2IHW A;  5KJW A;  1XMD A;  1EAE A;  1XMC A;  5KJT A;  2II5 A;  2ZBA A;  3U9B A;  2XR7 A;  1EAC A;  1EAB A;  1Q9J A;  5KJV A;  4N72 A;  1C4T A; 
#chains in the Genus database with same CATH topology
 1NDI A;  2FY4 A;  1EAA A;  1EAF A;  1NOC B;  3B2S A;  1PD5 A;  4G0B A;  4G2M A;  1S5O A;  1T7O A;  4JN5 A;  2E1T A;  1DPD A;  1XMD A;  1XMC A;  2II5 A;  3U9B A;  1Q9J A;  5DU9 A;  1DPC A;  1T7N A;  1DPB A;  3FOT A;  5KJS A;  2RKT A;  2E1V A;  2VSQ A;  1NM8 A;  2FY2 A;  3U9F A;  4HVM A;  2II3 A;  2H4T A;  1XL8 A;  3MAE A;  2II4 A;  3B30 A;  1T1U A;  1CIA A;  1E2O A;  5KJU A;  2CLA A;  3CLA A;  2ZBA A;  4EP9 A;  1EAC A;  1EAB A;  4N72 A;  1Q6X A;  3L60 A;  2FY3 A;  4JN3 A;  2FW3 A;  3FP0 A;  5FAL A;  4G22 A;  1NDF A;  1XL7 A;  5T3E A;  2JGP A;  2RKV A;  4EPH A;  1QCA A;  1NDB A;  1SCZ A;  1CLA A;  1L5A A;  2IHW A;  2H3P A;  5KJT A;  2XR7 A;  2XHG A;  4KEC A;  1EAD A;  2BGH A;  2DEB A;  2FY5 A;  2E1U A;  4KE4 A;  4EYW A;  5FAN A;  5DUA A;  2I9D A;  2H3W A;  1T7Q A;  2H3U A;  1Q23 A;  4CLA A;  5KJW A;  1EAE A;  2RCU A;  2FYO A;  5KJV A;  1C4T A; 
#chains in the Genus database with same CATH homology
 1DPC A;  1EAA A;  1EAF A;  2XHG A;  1DPB A;  1EAD A;  3FOT A;  1NOC B;  3L60 A;  4KEC A;  5KJS A;  2BGH A;  2RKT A;  2E1V A;  4JN3 A;  3B2S A;  3FP0 A;  1PD5 A;  2E1U A;  4G0B A;  2VSQ A;  4G2M A;  4KE4 A;  3U9F A;  4G22 A;  4HVM A;  5FAL A;  1XL7 A;  5FAN A;  2II3 A;  5T3E A;  2JGP A;  5DUA A;  1XL8 A;  2I9D A;  2RKV A;  3MAE A;  2II4 A;  5DU9 A;  1QCA A;  4JN5 A;  1SCZ A;  2E1T A;  3B30 A;  1CLA A;  1CIA A;  1E2O A;  5KJU A;  1Q23 A;  2CLA A;  1DPD A;  1L5A A;  3CLA A;  4CLA A;  2IHW A;  5KJW A;  1XMD A;  1EAE A;  1XMC A;  5KJT A;  2II5 A;  2ZBA A;  3U9B A;  2XR7 A;  1EAC A;  1EAB A;  1Q9J A;  5KJV A;  4N72 A;  1C4T A; 
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similar chains in the Genus database (?% sequence similarity)
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