2Y09A

The cyanobacterial pp2c-like phosphatase tppha requires three metals in the catalytic center for efficient catalysis
Total Genus 77
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
240
structure length
236
Chain Sequence
MDVAGLTDCGLIRKSNQDAFYIDEKHQRFFIVADGMGGHAGGEEASRLAVDHIRQYLETHLEDLQHDPVTLLRQAFLAANHAIVEQQRQNSARADMGTTAVVILLDEKGDRAWCAHVGASRIYRWRKDQLQQITSDHTWIAQAVQLGSLARQHPWRHVLSQCLGREDLSQIDIQPIDLEPGDRLLLCSDGLTEELTDDVISIYLSEPNVQKAAAALVDAAKTHGGRDNVTVVVISV
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase
molecule keywords PROTEIN SERIN-THREONIN PHOSPHATASE
publication title A Third Metal is Required for Catalytic Activity of the Signal-Transducing Protein Phosphatase M Tppha.
pubmed doi rcsb
source organism Synechococcus elongatus
total genus 77
structure length 236
sequence length 240
ec nomenclature
pdb deposition date 2010-12-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13672 PP2C_2 Protein phosphatase 2C
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.40.10 Alpha Beta 4-Layer Sandwich Phosphatase 2c; domain 1 PPM-type phosphatase domain 2y09A00
3MQ3A 3JRQA 4LGAB 4YZGA 3T91A 4WVOB 2J86A 2JFSA 5F1MA 3KB3B 2POPA 3ZVUB 2CM1A 3FXKA 3W42A 3FXJA 3NMNB 3UJGB 3KE6A 2JFRA 3QN1B 4LGBB 3FXMA 2V06A 2JFTA 5JO1B 4DA1A 2XZVA 2POMA 3W44A 3EQ2A 4LA7B 2I0OA 3RT0A 3T9QA 4OICB 4JNDA 3F79A 3NMTB 2J4OA 3FXOA 4LG5B 3W41A 4DS8B 2PNQA 2PK0A 3RNRA 2ISNA 3W45A 3N3CA 4RAFA 2Y09A 3UJKA 2IQ1A 5ITIA 4N0GA 4RAGA 3KDJB 3ES2A 2IRMA 1A6QA 2P8EA 3NMVB 3FXLA 3W40A 3UJLB 2I44A 4YZHA 1TXOA 4RA2A 3W43A 3ZT9A 5D2UA 5JO2B 3D8KA 2J82A 3PU9A
chains in the Genus database with same CATH superfamily
3MQ3A 3JRQA 4LGAB 4YZGA 3T91A 4WVOB 2J86A 2JFSA 5F1MA 4IIPA 3KB3B 2POPA 4IIKA 3ZVUB 2CM1A 3FXKA 3W42A 3FXJA 3NMNB 3UJGB 3KE6A 2JFRA 3QN1B 4LGBB 3FXMA 2V06A 2JFTA 5JO1B 4DA1A 2XZVA 2POMA 3W44A 3EQ2A 4LA7B 2I0OA 3RT0A 3T9QA 4OICB 4JNDA 3F79A 3NMTB 2J4OA 3FXOA 4LG5B 3W41A 4DS8B 2PNQA 2PK0A 3RNRA 2ISNA 3W45A 3N3CA 4RAFA 2Y09A 3UJKA 2IQ1A 5ITIA 4N0GA 4RAGA 3KDJB 3ES2A 2IRMA 1A6QA 2P8EA 3NMVB 3FXLA 3W40A 3UJLB 2I44A 4YZHA 1TXOA 4RA2A 3W43A 3ZT9A 5D2UA 5JO2B 3D8KA 2J82A 3PU9A
chains in the Genus database with same CATH topology
3MQ3A 3JRQA 4LGAB 4YZGA 3T91A 4WVOB 2J86A 2JFSA 5F1MA 3KB3B 2POPA 3ZVUB 2CM1A 3FXKA 3W42A 3FXJA 3NMNB 3UJGB 3KE6A 2JFRA 3QN1B 4LGBB 3FXMA 2V06A 2JFTA 5JO1B 4DA1A 2XZVA 2POMA 3W44A 3EQ2A 4LA7B 2I0OA 3RT0A 3T9QA 4OICB 4JNDA 3F79A 3NMTB 2J4OA 3FXOA 4LG5B 3W41A 4DS8B 2PNQA 2PK0A 3RNRA 2ISNA 3W45A 3N3CA 4RAFA 2Y09A 3UJKA 2IQ1A 5ITIA 4N0GA 4RAGA 3KDJB 3ES2A 2IRMA 1A6QA 2P8EA 3NMVB 3FXLA 3W40A 3UJLB 2I44A 4YZHA 1TXOA 4RA2A 3W43A 3ZT9A 5D2UA 5JO2B 3D8KA 2J82A 3PU9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MQ3 A;  3JRQ A;  4LGA B;  4YZG A;  3T91 A;  4WVO B;  2J86 A;  2JFS A;  5F1M A;  3KB3 B;  2POP A;  3ZVU B;  2CM1 A;  3FXK A;  3W42 A;  3FXJ A;  3NMN B;  3UJG B;  3KE6 A;  2JFR A;  3QN1 B;  4LGB B;  3FXM A;  2V06 A;  2JFT A;  5JO1 B;  4DA1 A;  2XZV A;  2POM A;  3W44 A;  3EQ2 A;  4LA7 B;  2I0O A;  3RT0 A;  3T9Q A;  4OIC B;  4JND A;  3F79 A;  3NMT B;  2J4O A;  3FXO A;  4LG5 B;  3W41 A;  4DS8 B;  2PNQ A;  2PK0 A;  3RNR A;  2ISN A;  3W45 A;  3N3C A;  4RAF A;  2Y09 A;  3UJK A;  2IQ1 A;  5ITI A;  4N0G A;  4RAG A;  3KDJ B;  3ES2 A;  2IRM A;  1A6Q A;  2P8E A;  3NMV B;  3FXL A;  3W40 A;  3UJL B;  2I44 A;  4YZH A;  1TXO A;  4RA2 A;  3W43 A;  3ZT9 A;  5D2U A;  5JO2 B;  3D8K A;  2J82 A;  3PU9 A; 
#chains in the Genus database with same CATH topology
 3MQ3 A;  3JRQ A;  4LGA B;  4YZG A;  3T91 A;  4WVO B;  2J86 A;  2JFS A;  5F1M A;  4IIP A;  3KB3 B;  2POP A;  4IIK A;  3ZVU B;  2CM1 A;  3FXK A;  3W42 A;  3FXJ A;  3NMN B;  3UJG B;  3KE6 A;  2JFR A;  3QN1 B;  4LGB B;  3FXM A;  2V06 A;  2JFT A;  5JO1 B;  4DA1 A;  2XZV A;  2POM A;  3W44 A;  3EQ2 A;  4LA7 B;  2I0O A;  3RT0 A;  3T9Q A;  4OIC B;  4JND A;  3F79 A;  3NMT B;  2J4O A;  3FXO A;  4LG5 B;  3W41 A;  4DS8 B;  2PNQ A;  2PK0 A;  3RNR A;  2ISN A;  3W45 A;  3N3C A;  4RAF A;  2Y09 A;  3UJK A;  2IQ1 A;  5ITI A;  4N0G A;  4RAG A;  3KDJ B;  3ES2 A;  2IRM A;  1A6Q A;  2P8E A;  3NMV B;  3FXL A;  3W40 A;  3UJL B;  2I44 A;  4YZH A;  1TXO A;  4RA2 A;  3W43 A;  3ZT9 A;  5D2U A;  5JO2 B;  3D8K A;  2J82 A;  3PU9 A; 
#chains in the Genus database with same CATH homology
 3MQ3 A;  3JRQ A;  4LGA B;  4YZG A;  3T91 A;  4WVO B;  2J86 A;  2JFS A;  5F1M A;  3KB3 B;  2POP A;  3ZVU B;  2CM1 A;  3FXK A;  3W42 A;  3FXJ A;  3NMN B;  3UJG B;  3KE6 A;  2JFR A;  3QN1 B;  4LGB B;  3FXM A;  2V06 A;  2JFT A;  5JO1 B;  4DA1 A;  2XZV A;  2POM A;  3W44 A;  3EQ2 A;  4LA7 B;  2I0O A;  3RT0 A;  3T9Q A;  4OIC B;  4JND A;  3F79 A;  3NMT B;  2J4O A;  3FXO A;  4LG5 B;  3W41 A;  4DS8 B;  2PNQ A;  2PK0 A;  3RNR A;  2ISN A;  3W45 A;  3N3C A;  4RAF A;  2Y09 A;  3UJK A;  2IQ1 A;  5ITI A;  4N0G A;  4RAG A;  3KDJ B;  3ES2 A;  2IRM A;  1A6Q A;  2P8E A;  3NMV B;  3FXL A;  3W40 A;  3UJL B;  2I44 A;  4YZH A;  1TXO A;  4RA2 A;  3W43 A;  3ZT9 A;  5D2U A;  5JO2 B;  3D8K A;  2J82 A;  3PU9 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...