2Y0SI

Crystal structure of sulfolobus shibatae rna polymerase in p21 space group
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
82
structure length
82
Chain Sequence
QDLHFNEVFVSLWQNKLTRYEIARVISARALQLAMGAPALIDINNISSTDVISIAEEEFKRGVLPITIRRRLPNGKIILLSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords DNA-DIRECTED RNA POLYMERASE
publication title Archaeal RNA polymerase: the influence of the protruding stalk in crystal packing and preliminary biophysical analysis of the Rpo13 subunit.
pubmed doi rcsb
total genus 13
structure length 82
sequence length 82
chains with identical sequence K
ec nomenclature ec 2.7.7.6: DNA-directed RNA polymerase.
pdb deposition date 2010-12-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF01192 RNA_pol_Rpb6 RNA polymerase Rpb6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.940.10 Alpha Beta Alpha-Beta Complex Eukaryotic RPB6 RNA polymerase subunit Eukaryotic RPB6 RNA polymerase subunit 2y0sI00
3CQZF 5E17E 4MEXE 1SMYE 4BBRF 1ZYRE 5IP7F 2PPBE 2R7ZF 3K7AF 3GTOF 4XLPE 4OIPE 2JA8F 5IPLE 1WCMF 5IYBF 1I3QF 4OIOE 2NVQF 2PMZK 5D4EE 4A3MF 3EQLE 4YFKE 2E2JF 4JK1E 5C44F 3S1NF 1I6HF 4LJZE 4C3HF 2O5IE 3M4OF 5M3FF 1Y1WF 2A69E 4KMUE 3S17F 4LLGE 2E2HF 2NVXF 3HKZK 3GTGF 1TWCF 3GTQF 4A3LF 3GTPF 2VUMF 2JA7F 4C3JF 3FKIF 3S1MF 3PO3F 5D4DE 3GTKF 3H3VG 1QKLA 5TMFE 4A93F 2WAQK 4AYBK 3HOYF 3RZDF 2WB1I 4ZH4E 3GTJF 3S2HF 4A3IF 4BXXF 4BY7F 3WODE 4G7HE 3I4MF 1YNNK 4YG2E 2O5JE 4XSXE 1R9TF 4BBSF 4Y7NF 1TWHF 5C3EF 4OIRE 2JA5F 5IYCF 1IW7E 2R92F 4MQ9E 2NVTF 2A6HE 5M5XF 4A3FF 4KN4E 4KN7E 3HOUF 4Q5SE 2B63F 4OIQE 3H0GF 3I4NF 4YFNE 5IP9F 1Y1VF 1TWFF 1SFOF 4G7OE 3GTLF 3M3YF 4BY1F 4MEYE 5M3MF 4A3GF 4G7ZE 2YU9F 4A3CF 5BYHE 4A3JF 1I6VE 3RZOF 3S15F 4X6AF 4A3KF 2R93F 4YFXE 4Y52F 5D4CE 2A6EE 5M5YF 3S1RF 4Q4ZE 3S1QF 4GZYE 2Y0SI 3S16F 3S2DF 4XSZE 2A68E 1TWGF 2JA6F 4A3EF 1TWAF 3PO2F 5C4JF 5FJ8F 4LK0E 2BE5E 3HOWF 2NVYF 4C3IF 4XLNE 4C2MF 1I50F 5IYDF 4LK1E 1HQME 4OINE 2CW0E 1YNJK 5TMCE 3HOVF 2E2IF 3S14F 1K83F 4A3BF 3HOZF 3GTMF 3DXJE 5M5WF 5E18E 5FLMF 3HOXF 4A3DF 5C4XF
chains in the Genus database with same CATH superfamily
3M4OE 3CQZF 5E17E 4MEXE 1SMYE 4BBRF 1ZYRE 5IP7F 1R9TE 2PPBE 4BBSE 5C3EE 3S17E 2R92E 2R7ZF 2NVTE 3K7AF 3GTOF 5M5XE 1TWCE 2WAQH 4OIPE 4XLPE 2JA8F 5IPLE 3HOUE 1WCMF 5IYBF 2B63E 1I3QF 4OIOE 2NVQF 3I4NE 2PMZK 5D4EE 4A3MF 3EQLE 4YFKE 2E2JF 4JK1E 5C44F 2VUME 3S1NF 1Y1VE 4LJZE 1I6HF 4C3HF 4C3JE 1TWFE 1SFOE 2O5IE 3M4OF 5M3FF 4BY1E 4QIWH 1Y1WF 3PO3E 3GTKE 2A69E 4KMUE 3S17F 4LLGE 2KRXA 2E2HF 2NVXF 4A3GE 3H3VF 3HKZK 3GTGF 2YU9E 1TWCF 3GTQF 3S2HE 4A3LF 3GTPF 4BXXE 1EIKA 3RZOE 3S15E 4A3KE 2VUMF 2R93E 2JA7F 4C3JF 4Y7NE 1TWHE 4Y52E 2JA5E 5IYCE 3FKIF 3S1MF 3PO3F 5D4DE 3GTKF 2WB1H 3H3VG 3S2DE 4A3FE 1QKLA 5TMFE 4A93F 2WAQK 1TWGE 4AYBK 2JA6E 3RZDF 4A3EE 3HOYF 1DZFA 2WB1I 4ZH4E 3GTJF 3H0GE 3PO2E 5C4JE 5FJ8E 3S2HF 5IP9E 4A3IF 4BXXF 2NVYE 4BY7F 3WODE 4G7HE 3I4MF 1YNNK 4YG2E 4C2ME 3GTLE 1I50E 4XSXE 3M3YE 2O5JE 1R9TF 4QIWK 4BBSF 4Y7NF 1TWHF 5C3EF 4OIRE 2JA5F 5IYCF 1IW7E 2R92F 4MQ9E 5M3ME 2E2IE 2NVTF 3HOVE 1K83E 3S14E 2A6HE 5M5XF 4A3FF 4A3BE 4KN4E 3HOZE 4KN7E 4A3CE 3HOUF 4Q5SE 4A3JE 2B63F 4OIQE 5FLME 3H0GF 3I4NF 4X6AE 4YFNE 5IP9F 4A3DE 1Y1VF 5C4XE 1TWFF 1SFOF 4G7OE 5M5YE 3GTLF 3S1RE 3M3YF 4BY1F 3S1QE 3S16E 4MEYE 3CQZE 4BBRE 5IP7E 5M3MF 4A3GF 1TWAE 4G7ZE 2YU9F 2R7ZE 4A3CF 3K7AE 3HOWE 3GTOE 5BYHE 4A3JF 1I6VE 4C3IE 2JA8E 3RZOF 3S15F 4A3KF 4X6AF 5IYDE 1WCME 5IYBE 2Y0SH 2R93F 2NVQE 4YFXE 4Y52F 5D4CE 2A6EE 5M5YF 5C44E 3S1RF 3S1NE 1I6HE 4Q4ZE 3S1QF 4C3HE 4GZYE 2Y0SI 3S16F 3S2DF 5M3FE 4XSZE 1Y1WE 2A68E 1TWGF 3GTME 2JA6F 4A3EF 1TWAF 5M5WE 3PO2F 2E2HE 2NVXE 5C4JF 5FJ8F 4LK0E 3HOXE 2BE5E 3HOWF 3GTGE 2NVYF 3GTQE 4AYBH 4C3IF 4XLNE 4A3LE 4C2MF 3GTPE 1I50F 5IYDF 4LK1E 1HQME 2PMZH 2CW0E 4OINE 1YNJK 5TMCE 2JA7E 3HOVF 2E2IF 3S14F 1K83F 3FKIE 3S1ME 4A3BF 3HOZF 3GTMF 3DXJE 5M5WF 5E18E 5FLMF 4A93E 3HOYE 3HKZH 3HOXF 3RZDE 4A3DF 3GTJE 1I3QE 5C4XF 2E2JE 4A3ME 4A3IE 4BY7E 3I4ME
chains in the Genus database with same CATH topology
3CQZF 5E17E 4MEXE 1SMYE 4BBRF 1ZYRE 5IP7F 2PPBE 2R7ZF 3K7AF 3GTOF 4XLPE 4OIPE 2JA8F 5IPLE 1WCMF 5IYBF 1I3QF 4OIOE 2NVQF 2PMZK 5D4EE 4A3MF 3EQLE 4YFKE 2E2JF 4JK1E 5C44F 3S1NF 1I6HF 4LJZE 4C3HF 2O5IE 3M4OF 5M3FF 1Y1WF 2A69E 4KMUE 3S17F 4LLGE 2KRXA 2E2HF 2NVXF 3HKZK 3GTGF 1TWCF 3GTQF 4A3LF 3GTPF 2VUMF 2JA7F 4C3JF 3FKIF 3S1MF 3PO3F 5D4DE 3GTKF 3H3VG 1QKLA 5TMFE 4A93F 2WAQK 4AYBK 3HOYF 3RZDF 2WB1I 4ZH4E 3GTJF 3S2HF 4A3IF 4BXXF 4BY7F 3WODE 4G7HE 3I4MF 1YNNK 4YG2E 2O5JE 4XSXE 1R9TF 4QIWK 4BBSF 4Y7NF 1TWHF 5C3EF 4OIRE 2JA5F 5IYCF 1IW7E 2R92F 4MQ9E 2NVTF 2A6HE 5M5XF 4A3FF 4KN4E 4KN7E 3HOUF 4Q5SE 2B63F 4OIQE 3H0GF 3I4NF 4YFNE 5IP9F 1Y1VF 1TWFF 1SFOF 4G7OE 3GTLF 3M3YF 4BY1F 4MEYE 5M3MF 4A3GF 4G7ZE 2YU9F 4A3CF 5BYHE 4A3JF 1I6VE 3RZOF 3S15F 4X6AF 4A3KF 2R93F 4YFXE 4Y52F 5D4CE 2A6EE 5M5YF 3S1RF 4Q4ZE 3S1QF 4GZYE 2Y0SI 3S16F 3S2DF 4XSZE 2A68E 1TWGF 2JA6F 4A3EF 1TWAF 3PO2F 5C4JF 5FJ8F 4LK0E 2BE5E 3HOWF 2NVYF 4C3IF 4XLNE 4C2MF 1I50F 5IYDF 4LK1E 1HQME 4OINE 2CW0E 1YNJK 5TMCE 3HOVF 2E2IF 3S14F 1K83F 4A3BF 3HOZF 3GTMF 3DXJE 5M5WF 5E18E 5FLMF 3HOXF 4A3DF 5C4XF
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CQZ F;  5E17 E;  4MEX E;  1SMY E;  4BBR F;  1ZYR E;  5IP7 F;  2PPB E;  2R7Z F;  3K7A F;  3GTO F;  4XLP E;  4OIP E;  2JA8 F;  5IPL E;  1WCM F;  5IYB F;  1I3Q F;  4OIO E;  2NVQ F;  2PMZ K;  5D4E E;  4A3M F;  3EQL E;  4YFK E;  2E2J F;  4JK1 E;  5C44 F;  3S1N F;  1I6H F;  4LJZ E;  4C3H F;  2O5I E;  3M4O F;  5M3F F;  1Y1W F;  2A69 E;  4KMU E;  3S17 F;  4LLG E;  2E2H F;  2NVX F;  3HKZ K;  3GTG F;  1TWC F;  3GTQ F;  4A3L F;  3GTP F;  2VUM F;  2JA7 F;  4C3J F;  3FKI F;  3S1M F;  3PO3 F;  5D4D E;  3GTK F;  3H3V G;  1QKL A;  5TMF E;  4A93 F;  2WAQ K;  4AYB K;  3HOY F;  3RZD F;  2WB1 I;  4ZH4 E;  3GTJ F;  3S2H F;  4A3I F;  4BXX F;  4BY7 F;  3WOD E;  4G7H E;  3I4M F;  1YNN K;  4YG2 E;  2O5J E;  4XSX E;  1R9T F;  4BBS F;  4Y7N F;  1TWH F;  5C3E F;  4OIR E;  2JA5 F;  5IYC F;  1IW7 E;  2R92 F;  4MQ9 E;  2NVT F;  2A6H E;  5M5X F;  4A3F F;  4KN4 E;  4KN7 E;  3HOU F;  4Q5S E;  2B63 F;  4OIQ E;  3H0G F;  3I4N F;  4YFN E;  5IP9 F;  1Y1V F;  1TWF F;  1SFO F;  4G7O E;  3GTL F;  3M3Y F;  4BY1 F;  4MEY E;  5M3M F;  4A3G F;  4G7Z E;  2YU9 F;  4A3C F;  5BYH E;  4A3J F;  1I6V E;  3RZO F;  3S15 F;  4X6A F;  4A3K F;  2R93 F;  4YFX E;  4Y52 F;  5D4C E;  2A6E E;  5M5Y F;  3S1R F;  4Q4Z E;  3S1Q F;  4GZY E;  2Y0S I;  3S16 F;  3S2D F;  4XSZ E;  2A68 E;  1TWG F;  2JA6 F;  4A3E F;  1TWA F;  3PO2 F;  5C4J F;  5FJ8 F;  4LK0 E;  2BE5 E;  3HOW F;  2NVY F;  4C3I F;  4XLN E;  4C2M F;  1I50 F;  5IYD F;  4LK1 E;  1HQM E;  4OIN E;  2CW0 E;  1YNJ K;  5TMC E;  3HOV F;  2E2I F;  3S14 F;  1K83 F;  4A3B F;  3HOZ F;  3GTM F;  3DXJ E;  5M5W F;  5E18 E;  5FLM F;  3HOX F;  4A3D F;  5C4X F; 
#chains in the Genus database with same CATH topology
 3M4O E;  3CQZ F;  5E17 E;  4MEX E;  1SMY E;  4BBR F;  1ZYR E;  5IP7 F;  1R9T E;  2PPB E;  4BBS E;  5C3E E;  3S17 E;  2R92 E;  2R7Z F;  2NVT E;  3K7A F;  3GTO F;  5M5X E;  1TWC E;  2WAQ H;  4OIP E;  4XLP E;  2JA8 F;  5IPL E;  3HOU E;  1WCM F;  5IYB F;  2B63 E;  1I3Q F;  4OIO E;  2NVQ F;  3I4N E;  2PMZ K;  5D4E E;  4A3M F;  3EQL E;  4YFK E;  2E2J F;  4JK1 E;  5C44 F;  2VUM E;  3S1N F;  1Y1V E;  4LJZ E;  1I6H F;  4C3H F;  4C3J E;  1TWF E;  1SFO E;  2O5I E;  3M4O F;  5M3F F;  4BY1 E;  4QIW H;  1Y1W F;  3PO3 E;  3GTK E;  2A69 E;  4KMU E;  3S17 F;  4LLG E;  2KRX A;  2E2H F;  2NVX F;  4A3G E;  3H3V F;  3HKZ K;  3GTG F;  2YU9 E;  1TWC F;  3GTQ F;  3S2H E;  4A3L F;  3GTP F;  4BXX E;  1EIK A;  3RZO E;  3S15 E;  4A3K E;  2VUM F;  2R93 E;  2JA7 F;  4C3J F;  4Y7N E;  1TWH E;  4Y52 E;  2JA5 E;  5IYC E;  3FKI F;  3S1M F;  3PO3 F;  5D4D E;  3GTK F;  2WB1 H;  3H3V G;  3S2D E;  4A3F E;  1QKL A;  5TMF E;  4A93 F;  2WAQ K;  1TWG E;  4AYB K;  2JA6 E;  3RZD F;  4A3E E;  3HOY F;  1DZF A;  2WB1 I;  4ZH4 E;  3GTJ F;  3H0G E;  3PO2 E;  5C4J E;  5FJ8 E;  3S2H F;  5IP9 E;  4A3I F;  4BXX F;  2NVY E;  4BY7 F;  3WOD E;  4G7H E;  3I4M F;  1YNN K;  4YG2 E;  4C2M E;  3GTL E;  1I50 E;  4XSX E;  3M3Y E;  2O5J E;  1R9T F;  4QIW K;  4BBS F;  4Y7N F;  1TWH F;  5C3E F;  4OIR E;  2JA5 F;  5IYC F;  1IW7 E;  2R92 F;  4MQ9 E;  5M3M E;  2E2I E;  2NVT F;  3HOV E;  1K83 E;  3S14 E;  2A6H E;  5M5X F;  4A3F F;  4A3B E;  4KN4 E;  3HOZ E;  4KN7 E;  4A3C E;  3HOU F;  4Q5S E;  4A3J E;  2B63 F;  4OIQ E;  5FLM E;  3H0G F;  3I4N F;  4X6A E;  4YFN E;  5IP9 F;  4A3D E;  1Y1V F;  5C4X E;  1TWF F;  1SFO F;  4G7O E;  5M5Y E;  3GTL F;  3S1R E;  3M3Y F;  4BY1 F;  3S1Q E;  3S16 E;  4MEY E;  3CQZ E;  4BBR E;  5IP7 E;  5M3M F;  4A3G F;  1TWA E;  4G7Z E;  2YU9 F;  2R7Z E;  4A3C F;  3K7A E;  3HOW E;  3GTO E;  5BYH E;  4A3J F;  1I6V E;  4C3I E;  2JA8 E;  3RZO F;  3S15 F;  4A3K F;  4X6A F;  5IYD E;  1WCM E;  5IYB E;  2Y0S H;  2R93 F;  2NVQ E;  4YFX E;  4Y52 F;  5D4C E;  2A6E E;  5M5Y F;  5C44 E;  3S1R F;  3S1N E;  1I6H E;  4Q4Z E;  3S1Q F;  4C3H E;  4GZY E;  2Y0S I;  3S16 F;  3S2D F;  5M3F E;  4XSZ E;  1Y1W E;  2A68 E;  1TWG F;  3GTM E;  2JA6 F;  4A3E F;  1TWA F;  5M5W E;  3PO2 F;  2E2H E;  2NVX E;  5C4J F;  5FJ8 F;  4LK0 E;  3HOX E;  2BE5 E;  3HOW F;  3GTG E;  2NVY F;  3GTQ E;  4AYB H;  4C3I F;  4XLN E;  4A3L E;  4C2M F;  3GTP E;  1I50 F;  5IYD F;  4LK1 E;  1HQM E;  2PMZ H;  2CW0 E;  4OIN E;  1YNJ K;  5TMC E;  2JA7 E;  3HOV F;  2E2I F;  3S14 F;  1K83 F;  3FKI E;  3S1M E;  4A3B F;  3HOZ F;  3GTM F;  3DXJ E;  5M5W F;  5E18 E;  5FLM F;  4A93 E;  3HOY E;  3HKZ H;  3HOX F;  3RZD E;  4A3D F;  3GTJ E;  1I3Q E;  5C4X F;  2E2J E;  4A3M E;  4A3I E;  4BY7 E;  3I4M E; 
#chains in the Genus database with same CATH homology
 3CQZ F;  5E17 E;  4MEX E;  1SMY E;  4BBR F;  1ZYR E;  5IP7 F;  2PPB E;  2R7Z F;  3K7A F;  3GTO F;  4XLP E;  4OIP E;  2JA8 F;  5IPL E;  1WCM F;  5IYB F;  1I3Q F;  4OIO E;  2NVQ F;  2PMZ K;  5D4E E;  4A3M F;  3EQL E;  4YFK E;  2E2J F;  4JK1 E;  5C44 F;  3S1N F;  1I6H F;  4LJZ E;  4C3H F;  2O5I E;  3M4O F;  5M3F F;  1Y1W F;  2A69 E;  4KMU E;  3S17 F;  4LLG E;  2KRX A;  2E2H F;  2NVX F;  3HKZ K;  3GTG F;  1TWC F;  3GTQ F;  4A3L F;  3GTP F;  2VUM F;  2JA7 F;  4C3J F;  3FKI F;  3S1M F;  3PO3 F;  5D4D E;  3GTK F;  3H3V G;  1QKL A;  5TMF E;  4A93 F;  2WAQ K;  4AYB K;  3HOY F;  3RZD F;  2WB1 I;  4ZH4 E;  3GTJ F;  3S2H F;  4A3I F;  4BXX F;  4BY7 F;  3WOD E;  4G7H E;  3I4M F;  1YNN K;  4YG2 E;  2O5J E;  4XSX E;  1R9T F;  4QIW K;  4BBS F;  4Y7N F;  1TWH F;  5C3E F;  4OIR E;  2JA5 F;  5IYC F;  1IW7 E;  2R92 F;  4MQ9 E;  2NVT F;  2A6H E;  5M5X F;  4A3F F;  4KN4 E;  4KN7 E;  3HOU F;  4Q5S E;  2B63 F;  4OIQ E;  3H0G F;  3I4N F;  4YFN E;  5IP9 F;  1Y1V F;  1TWF F;  1SFO F;  4G7O E;  3GTL F;  3M3Y F;  4BY1 F;  4MEY E;  5M3M F;  4A3G F;  4G7Z E;  2YU9 F;  4A3C F;  5BYH E;  4A3J F;  1I6V E;  3RZO F;  3S15 F;  4X6A F;  4A3K F;  2R93 F;  4YFX E;  4Y52 F;  5D4C E;  2A6E E;  5M5Y F;  3S1R F;  4Q4Z E;  3S1Q F;  4GZY E;  2Y0S I;  3S16 F;  3S2D F;  4XSZ E;  2A68 E;  1TWG F;  2JA6 F;  4A3E F;  1TWA F;  3PO2 F;  5C4J F;  5FJ8 F;  4LK0 E;  2BE5 E;  3HOW F;  2NVY F;  4C3I F;  4XLN E;  4C2M F;  1I50 F;  5IYD F;  4LK1 E;  1HQM E;  4OIN E;  2CW0 E;  1YNJ K;  5TMC E;  3HOV F;  2E2I F;  3S14 F;  1K83 F;  4A3B F;  3HOZ F;  3GTM F;  3DXJ E;  5M5W F;  5E18 E;  5FLM F;  3HOX F;  4A3D F;  5C4X F; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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