2Y1BA

Crystal structure of the e. coli outer membrane lipoprotein rcsf
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
86
structure length
86
Chain Sequence
TPVRIYTNAEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYRQAVCIGSALNIT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
molecule keywords PUTATIVE OUTER MEMBRANE PROTEIN, SIGNAL
publication title Crystal Structure of the Outer Membrane Protein Rcsf, a New Substrate for the Periplasmic Protein- Disulfide Isomerase Dsbc.
pubmed doi rcsb
source organism Escherichia coli
total genus 24
structure length 86
sequence length 86
ec nomenclature
pdb deposition date 2010-12-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16358 RcsF RcsF lipoprotein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.110.70 Alpha Beta 2-Layer Sandwich Translation Initiation Factor IF3 Hypothetical protein apc22750. Chain B 2y1bA00
3QKBA 2GTCA 1VR4A 2L8YA 1Y2IA 2Y1BA
chains in the Genus database with same CATH superfamily
3TTDA 1TIGA 3ZIIA 2EH1A 4EO0A 3ZIEA 1Y2IA 4HVCA 1DCJA 1XEZA 4K87A 1NJ8A 3QKBA 4Z9EA 4FBWA 3HZ7A 4NZRM 3U6YA 3LVJC 1RQ8A 2CRQA 3TTCA 2Z7CA 1Y9XA 4K86A 4OLFA 1JE3A 1PAVA 2P9BA 4HVZA 1NJ2A 1JDQA 3TSPA 2EK0A 3ZIHA 2A2YA 3VTHA 1H4SA 1JO0A 2Q3VA 3TSQA 2M71A 4FCXA 4YDQA 3LVKB 4YKEA 3TOEA 2LXRA 2BKYX 3TTFA 1NFHA 1VR4A 1H0XA 1VM0A 2IFEA 4FBQA 3IALA 1NH9A 3IABB 1LN4A 3P04A 1H0YA 1H4QA 1UDVA 4NCXA 4HD0A 3DSDA 4NZTM 2LN3A 2GTCA 4TWAA 3WBMA 4Q15A 4WI1A 3TSUA 3IABA 1NFJA 1S8EA 3VTIA 1II7A 2H9UA 4K88A 4FBKA 1HC7A 1H4TA 3DSCA 1NJ6A 3T1IA 2L8YA 1NJ5A 1NJ1A 3ZIGA 2Y1BA
chains in the Genus database with same CATH topology
3QKBA 2GTCA 1VR4A 2L8YA 1Y2IA 2Y1BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3QKB A;  2GTC A;  1VR4 A;  2L8Y A;  1Y2I A;  2Y1B A; 
#chains in the Genus database with same CATH topology
 3TTD A;  1TIG A;  3ZII A;  2EH1 A;  4EO0 A;  3ZIE A;  1Y2I A;  4HVC A;  1DCJ A;  1XEZ A;  4K87 A;  1NJ8 A;  3QKB A;  4Z9E A;  4FBW A;  3HZ7 A;  4NZR M;  3U6Y A;  3LVJ C;  1RQ8 A;  2CRQ A;  3TTC A;  2Z7C A;  1Y9X A;  4K86 A;  4OLF A;  1JE3 A;  1PAV A;  2P9B A;  4HVZ A;  1NJ2 A;  1JDQ A;  3TSP A;  2EK0 A;  3ZIH A;  2A2Y A;  3VTH A;  1H4S A;  1JO0 A;  2Q3V A;  3TSQ A;  2M71 A;  4FCX A;  4YDQ A;  3LVK B;  4YKE A;  3TOE A;  2LXR A;  2BKY X;  3TTF A;  1NFH A;  1VR4 A;  1H0X A;  1VM0 A;  2IFE A;  4FBQ A;  3IAL A;  1NH9 A;  3IAB B;  1LN4 A;  3P04 A;  1H0Y A;  1H4Q A;  1UDV A;  4NCX A;  4HD0 A;  3DSD A;  4NZT M;  2LN3 A;  2GTC A;  4TWA A;  3WBM A;  4Q15 A;  4WI1 A;  3TSU A;  3IAB A;  1NFJ A;  1S8E A;  3VTI A;  1II7 A;  2H9U A;  4K88 A;  4FBK A;  1HC7 A;  1H4T A;  3DSC A;  1NJ6 A;  3T1I A;  2L8Y A;  1NJ5 A;  1NJ1 A;  3ZIG A;  2Y1B A; 
#chains in the Genus database with same CATH homology
 3QKB A;  2GTC A;  1VR4 A;  2L8Y A;  1Y2I A;  2Y1B A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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