2Y1RA

Structure of meca121 & clpc n-domain complex
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
140
structure length
140
Chain Sequence
FGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure and Mechanism of the Hexameric Meca-Clpc Molecular Machine.
pubmed doi rcsb
molecule tags Transcription
source organism Bacillus subtilis
molecule keywords NEGATIVE REGULATOR OF GENETIC COMPETENCE CLPC/MECB
total genus 54
structure length 140
sequence length 140
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature
pdb deposition date 2010-12-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02861 Clp_N Clp amino terminal domain, pathogenicity island component
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1780.10 Mainly Alpha Orthogonal Bundle Double Clp-N motif Clp, N-terminal domain 2y1rA00
1K6KA 4HH5A 4Y0CA 1QVRA 4UQWA 1LZWB 4Y0BA 4IODA 5HBNA 4P15A 1KSFX 3ZRIA 3FH2A 4IRFA 3PXGA 2K77A 3ZRJA 1MG9B 2Y1QA 3WDDA 5GUIA 1MBXA 1R6QA 3WDCA 1R6BX 3FESA 1R6OA 1MBVA 3WDBA 1KHYA 1R6CX 4HH6A 3WDEA 1MBUA 2Y1RA
chains in the Genus database with same CATH superfamily
1K6KA 4HH5A 4Y0CA 1QVRA 4UQWA 1LZWB 4Y0BA 4IODA 5HBNA 4P15A 1KSFX 3ZRIA 3FH2A 4IRFA 3PXGA 2K77A 3ZRJA 1MG9B 2Y1QA 3WDDA 5GUIA 1MBXA 1R6QA 3WDCA 1R6BX 3FESA 1R6OA 1MBVA 3WDBA 1KHYA 1R6CX 4HH6A 3WDEA 1MBUA 2Y1RA
chains in the Genus database with same CATH topology
1K6KA 4HH5A 4Y0CA 1QVRA 4UQWA 1LZWB 4Y0BA 4IODA 5HBNA 4P15A 1KSFX 3ZRIA 3FH2A 4IRFA 3PXGA 2K77A 3ZRJA 1MG9B 2Y1QA 3WDDA 5GUIA 1MBXA 1R6QA 3WDCA 1R6BX 3FESA 1R6OA 1MBVA 3WDBA 1KHYA 1R6CX 4HH6A 3WDEA 1MBUA 2Y1RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1K6K A;  4HH5 A;  4Y0C A;  1QVR A;  4UQW A;  1LZW B;  4Y0B A;  4IOD A;  5HBN A;  4P15 A;  1KSF X;  3ZRI A;  3FH2 A;  4IRF A;  3PXG A;  2K77 A;  3ZRJ A;  1MG9 B;  2Y1Q A;  3WDD A;  5GUI A;  1MBX A;  1R6Q A;  3WDC A;  1R6B X;  3FES A;  1R6O A;  1MBV A;  3WDB A;  1KHY A;  1R6C X;  4HH6 A;  3WDE A;  1MBU A;  2Y1R A; 
#chains in the Genus database with same CATH topology
 1K6K A;  4HH5 A;  4Y0C A;  1QVR A;  4UQW A;  1LZW B;  4Y0B A;  4IOD A;  5HBN A;  4P15 A;  1KSF X;  3ZRI A;  3FH2 A;  4IRF A;  3PXG A;  2K77 A;  3ZRJ A;  1MG9 B;  2Y1Q A;  3WDD A;  5GUI A;  1MBX A;  1R6Q A;  3WDC A;  1R6B X;  3FES A;  1R6O A;  1MBV A;  3WDB A;  1KHY A;  1R6C X;  4HH6 A;  3WDE A;  1MBU A;  2Y1R A; 
#chains in the Genus database with same CATH homology
 1K6K A;  4HH5 A;  4Y0C A;  1QVR A;  4UQW A;  1LZW B;  4Y0B A;  4IOD A;  5HBN A;  4P15 A;  1KSF X;  3ZRI A;  3FH2 A;  4IRF A;  3PXG A;  2K77 A;  3ZRJ A;  1MG9 B;  2Y1Q A;  3WDD A;  5GUI A;  1MBX A;  1R6Q A;  3WDC A;  1R6B X;  3FES A;  1R6O A;  1MBV A;  3WDB A;  1KHY A;  1R6C X;  4HH6 A;  3WDE A;  1MBU A;  2Y1R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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