2Y3CA

Treponema denticola variable protein 1
Total Genus 86
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
278
structure length
277
Chain Sequence
TPVDKTYTVGSVEFTMKGIAAVNAQLGHNDYSINQPHTVSLSAYLIGETEVTQELWQAVMGNNPSHFNGSPAVGETQGKRPVENVNWYQAIAFCNKLSIKLNLEPCYTVNVGGNPVDFAALSFDQIPDSNNADWDKAELDINKKGFRLPTEAEWEWAAKGGTDDKWSGTNTEAELKNYAWYGSNSGSKTHEVKKKKPNWYGLYDIAGNVAEWCWDWRADIHTGDSFPQDYPGPASGSGRVLRGGSWAGSADYCAVGERVNISPGVRSDLGFRLACRP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Unknown function
molecule keywords TREPONEMA DENTICOLA VARIABLE PROTEIN 1
publication title Conservation of the C-Type Lectin Fold for Massive Sequence Variation in a Treponema Diversity-Generating Retroelement.
pubmed doi rcsb
source organism Treponema denticola
total genus 86
structure length 277
sequence length 278
ec nomenclature
pdb deposition date 2010-12-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03781 FGE-sulfatase Sulfatase-modifying factor enzyme 1
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1580.10 Alpha Beta Alpha-Beta Complex paralog of FGE (formylglycine-generating enzyme) paralog of FGE (formylglycine-generating enzyme) 2y3cA00
1Y1FX 2HIBX 1YU4A 1Y1IX 1YU1A 2AFTX 1Y1HX 1YU3A 2AIKX 1Z70X 1Y1GX 1Y1EX 2AFYX 1YU2A 2AIIX 1YU0A 2Q17A 1Y1JX 2Y3CA 2AIJX 2HI8X 2IOUA 1Y4JA
chains in the Genus database with same CATH superfamily
1Y1FX 2HIBX 1YU4A 1Y1IX 1YU1A 2AFTX 1Y1HX 1YU3A 2AIKX 1Z70X 1Y1GX 1Y1EX 2AFYX 1YU2A 2AIIX 1YU0A 2Q17A 1Y1JX 2Y3CA 2AIJX 2HI8X 2IOUA 1Y4JA
chains in the Genus database with same CATH topology
1Y1FX 2HIBX 1YU4A 1Y1IX 1YU1A 2AFTX 1Y1HX 1YU3A 2AIKX 1Z70X 1Y1GX 1Y1EX 2AFYX 1YU2A 2AIIX 1YU0A 2Q17A 1Y1JX 2Y3CA 2AIJX 2HI8X 2IOUA 1Y4JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Y1F X;  2HIB X;  1YU4 A;  1Y1I X;  1YU1 A;  2AFT X;  1Y1H X;  1YU3 A;  2AIK X;  1Z70 X;  1Y1G X;  1Y1E X;  2AFY X;  1YU2 A;  2AII X;  1YU0 A;  2Q17 A;  1Y1J X;  2Y3C A;  2AIJ X;  2HI8 X;  2IOU A;  1Y4J A; 
#chains in the Genus database with same CATH topology
 1Y1F X;  2HIB X;  1YU4 A;  1Y1I X;  1YU1 A;  2AFT X;  1Y1H X;  1YU3 A;  2AIK X;  1Z70 X;  1Y1G X;  1Y1E X;  2AFY X;  1YU2 A;  2AII X;  1YU0 A;  2Q17 A;  1Y1J X;  2Y3C A;  2AIJ X;  2HI8 X;  2IOU A;  1Y4J A; 
#chains in the Genus database with same CATH homology
 1Y1F X;  2HIB X;  1YU4 A;  1Y1I X;  1YU1 A;  2AFT X;  1Y1H X;  1YU3 A;  2AIK X;  1Z70 X;  1Y1G X;  1Y1E X;  2AFY X;  1YU2 A;  2AII X;  1YU0 A;  2Q17 A;  1Y1J X;  2Y3C A;  2AIJ X;  2HI8 X;  2IOU A;  1Y4J A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...