2Y3VA

N-terminal head domain of danio rerio sas-6
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
158
structure length
158
Chain Sequence
PHMTELLFNKRLQVLVKSKDTDERRSVIRVSIELQLPSSPVHRKDLVVRLTDDTDLYFLYNLIISEEDFQSLKVQQGLLIDFTSFPQKFIDLLEQCICEQDKENPRFLLQLSSSSSAFDHSPSNLNIVETNAFKHLTHLSLKLLPGSDTDIKKYLASC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords SPINDLE ASSEMBLY ABNORMAL PROTEIN 6 HOMOLOG
publication title Structures of SAS-6 suggest its organization in centrioles.
pubmed doi rcsb
source organism Danio rerio
total genus 37
structure length 158
sequence length 158
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2010-12-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16531 SAS-6_N Centriolar protein SAS N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.210.20 Mainly Beta Beta Complex Dna Repair Protein Xrcc4; Chain: A, domain 1 Dna Repair Protein Xrcc4; Chain: A, domain 1 2y3vA00
4G79A 3Q0YA 4GFAA 4CKNA 2Y3WA 4CKPA 4CKMA 2Y3VA 4GFCA 3PYIA 4GEUA 4GEXA 3Q0XA
chains in the Genus database with same CATH superfamily
4GFAA 2Y3WA 4GFCA 5CHXA 3MUDA 4GEXA 2QM4A 4G79A 4CKPA 4CKMA 5CJ0A 5CJ4A 3PYIA 1IK9A 4XA4A 3SR2C 2R9AA 4CKNA 3SR2A 3RWRD 3II6A 4GEUA 3RWRA 3Q0YA 1FU1A 2Y3VA 3Q0XA
chains in the Genus database with same CATH topology
4G79A 3Q0YA 4GFAA 4CKNA 2Y3WA 4CKPA 4CKMA 2Y3VA 4GFCA 3PYIA 4GEUA 4GEXA 3Q0XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4G79 A;  3Q0Y A;  4GFA A;  4CKN A;  2Y3W A;  4CKP A;  4CKM A;  2Y3V A;  4GFC A;  3PYI A;  4GEU A;  4GEX A;  3Q0X A; 
#chains in the Genus database with same CATH topology
 4GFA A;  2Y3W A;  4GFC A;  5CHX A;  3MUD A;  4GEX A;  2QM4 A;  4G79 A;  4CKP A;  4CKM A;  5CJ0 A;  5CJ4 A;  3PYI A;  1IK9 A;  4XA4 A;  3SR2 C;  2R9A A;  4CKN A;  3SR2 A;  3RWR D;  3II6 A;  4GEU A;  3RWR A;  3Q0Y A;  1FU1 A;  2Y3V A;  3Q0X A; 
#chains in the Genus database with same CATH homology
 4G79 A;  3Q0Y A;  4GFA A;  4CKN A;  2Y3W A;  4CKP A;  4CKM A;  2Y3V A;  4GFC A;  3PYI A;  4GEU A;  4GEX A;  3Q0X A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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