2Y54A

Fragment growing induces conformational changes in acetylcholine- binding protein: a structural and thermodynamic analysis - (fragment 1)
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
205
structure length
205
Chain Sequence
QANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKVDSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGVTCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Receptor
molecule keywords SOLUBLE ACETYLCHOLINE RECEPTOR
publication title Fragment Growing Induces Conformational Changes in Acetylcholine-Binding Protein: A Structural and Thermodynamic Analysis.
pubmed doi rcsb
source organism Aplysia californica
total genus 43
structure length 205
sequence length 205
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2011-01-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 2y54A00
2BR8A 5AFMA 5HCMA 5TVCA 2XQ9A 4UM3A 4WV9A 3WTHA 4ILAA 5J5FA 2Y54A 2BG9A 3TLWA 2XYSA 4BQTA 2XQ4A 2Y58A 3IGQA 3TLVA 2W8GA 5AFJA 3WTNA 5KE4A 4QH4A 2XNVA 3JADA 4HFCA 2PH9A 4IREA 3ZDGA 3UU4A 2WN9A 5CO5A 5HEOA 4AFHA 3PEOA 3EHZA 4Z90A 2WNLA 2BYSA 2YOEA 5IUXA 4Z91A 5J0ZA 5HEJA 2W8FA 2UZ6A 2XZ5A 4ZK1A 3TLTA 5HCJA 1I9BA 2XNUA 1UX2A 5L4HA 2XQ6A 5SYOA 3UU6A 4NPPA 4TWFA 2Y57A 3TLSA 3RQWA 5FJVA 4TNVA 3RI5A 3WIPA 4HFHA 2WNJA 4ZZCA 2XQ8A 3ZDHA 5J5IA 1UV6A 4HFDA 4B5DA 4BFQA 5HEUA 2X00D 3T4MA 5CFBA 2BR7A 3WTKA 4QH5A 4TWHA 4ZK4A 3EI0A 4QH1A 5LG3A 4UM1A 4ZZBA 2BYPA 2BG9C 4X5TA 5BW2A 3JAEA 3RIFA 4AFGA 5HEHA 2BYNA 5L4EA 3JAFA 4LMKA 4HFEA 2VL0A 4TNWA 3U8MA 2ZJUA 4UM3P 4DBMA 3UQ4A 4F8HA 4ALXA 3LSVA 5AFKA 3SIOA 4COFA 3RQUA 5BRXA 3C79A 2BG9E 5L47A 5HEGA 3SQ6A 5AFMB 3U8LA 2WZYA 3UU3A 4EZ1A 3GUAA 2BJ0A 3WTIA 5KZUA 4TWDA 4LMJA 4QABA 3C84A 3RHWA 4D01A 2Y56A 3SQ9A 3UU5A 5AFNA 4QAAA 3TLUA 4PIRA 4A97A 2YMDA 3UU8A 2XQAA 4UM3S 4HQPA 2XQ7A 2YMEA 2C9TA 2Y7YA 3SH1A 3UUBA 4QACA 4ZR6A 2PGZA 4ILCA 3WTJA 3WTMA 3ZKRA 5AINA 3P50A 4HFIA 4ZRUA 5LXBA 2ZJVA 4UXUA 2XQ5A 4LMLA 3U8NA 4ZJSA 2WNCA 5AFHA 4XHEA 3EAMA 1UW6A 4IL9A 5J5GA 3UQ7A 2BYQA 2X00A 4FRRA 4ILBA 5J5HA 5JMEA 2BG9B 3U8KA 5AFLA 4IL4A 2QC1B 2XZ6A 4ZJTA 2XNTA 5BP0A 4NZBA 3WTLA 4A98A 2XQ3A 4HFBA 2BYRA 3P4WA 4UY2A 3WTOA 4XK9A 2XYTA 3PMZA 4AFTA 2YKSA 3U8JA 3RIAA 2YN6A
chains in the Genus database with same CATH superfamily
2BR8A 5AFMA 5HCMA 5TVCA 2XQ9A 4UM3A 4WV9A 3WTHA 4ILAA 5J5FA 2Y54A 2BG9A 3TLWA 2XYSA 4BQTA 2XQ4A 2Y58A 3IGQA 3TLVA 2W8GA 5AFJA 3WTNA 5KE4A 4QH4A 2XNVA 3JADA 4HFCA 2PH9A 4IREA 3ZDGA 3UU4A 2WN9A 5CO5A 5HEOA 4AFHA 3PEOA 3EHZA 4Z90A 2WNLA 2BYSA 2YOEA 5IUXA 4Z91A 5J0ZA 5HEJA 2W8FA 2UZ6A 2XZ5A 4ZK1A 3TLTA 5HCJA 1I9BA 2XNUA 1UX2A 5L4HA 2XQ6A 5SYOA 3UU6A 4NPPA 4TWFA 2Y57A 3TLSA 3RQWA 5FJVA 4TNVA 3RI5A 3WIPA 4HFHA 2WNJA 4ZZCA 2XQ8A 3ZDHA 5J5IA 1UV6A 4HFDA 4B5DA 4BFQA 5HEUA 2X00D 3T4MA 5CFBA 2BR7A 3WTKA 4QH5A 4TWHA 4ZK4A 3EI0A 4QH1A 5LG3A 4UM1A 4ZZBA 2BYPA 2BG9C 4X5TA 5BW2A 3JAEA 3RIFA 4AFGA 5HEHA 2BYNA 5L4EA 3JAFA 4LMKA 4HFEA 2VL0A 4TNWA 3U8MA 2ZJUA 4UM3P 4DBMA 3UQ4A 4F8HA 4ALXA 3LSVA 5AFKA 3SIOA 4COFA 3RQUA 5BRXA 3C79A 2BG9E 5L47A 5HEGA 3SQ6A 5AFMB 3U8LA 2WZYA 3UU3A 4EZ1A 3GUAA 2BJ0A 3WTIA 5KZUA 4TWDA 4LMJA 4QABA 3C84A 3RHWA 4D01A 2Y56A 3SQ9A 3UU5A 5AFNA 4QAAA 3TLUA 4PIRA 4A97A 2YMDA 3UU8A 2XQAA 4UM3S 4HQPA 2XQ7A 2YMEA 2C9TA 2Y7YA 3SH1A 3UUBA 4QACA 4ZR6A 2PGZA 4ILCA 3WTJA 3WTMA 3ZKRA 5AINA 3P50A 4HFIA 4ZRUA 5LXBA 2ZJVA 4UXUA 2XQ5A 4LMLA 3U8NA 4ZJSA 2WNCA 5AFHA 4XHEA 3EAMA 1UW6A 4IL9A 5J5GA 3UQ7A 2BYQA 2X00A 4FRRA 4ILBA 5J5HA 5JMEA 2BG9B 3U8KA 5AFLA 4IL4A 2QC1B 2XZ6A 4ZJTA 2XNTA 5BP0A 4NZBA 3WTLA 4A98A 2XQ3A 4HFBA 2BYRA 3P4WA 4UY2A 3WTOA 4XK9A 2XYTA 3PMZA 4AFTA 2YKSA 3U8JA 3RIAA 2YN6A
chains in the Genus database with same CATH topology
2BR8A 5AFMA 5HCMA 5TVCA 2XQ9A 4UM3A 4WV9A 3WTHA 4ILAA 5J5FA 2Y54A 2BG9A 3TLWA 2XYSA 4BQTA 2XQ4A 2Y58A 3IGQA 3TLVA 2W8GA 5AFJA 3WTNA 5KE4A 4QH4A 2XNVA 3JADA 4HFCA 2PH9A 4IREA 3ZDGA 3UU4A 2WN9A 5CO5A 5HEOA 4AFHA 3PEOA 3EHZA 4Z90A 2WNLA 2BYSA 2YOEA 5IUXA 4Z91A 5J0ZA 5HEJA 2W8FA 2UZ6A 2XZ5A 4ZK1A 3TLTA 5HCJA 1I9BA 2XNUA 1UX2A 5L4HA 2XQ6A 5SYOA 3UU6A 4NPPA 4TWFA 2Y57A 3TLSA 3RQWA 5FJVA 4TNVA 3RI5A 3WIPA 4HFHA 2WNJA 4ZZCA 2XQ8A 3ZDHA 5J5IA 1UV6A 4HFDA 4B5DA 4BFQA 5HEUA 2X00D 3T4MA 5CFBA 2BR7A 3WTKA 4QH5A 4TWHA 4ZK4A 3EI0A 4QH1A 5LG3A 4UM1A 4ZZBA 2BYPA 2BG9C 4X5TA 5BW2A 3JAEA 3RIFA 4AFGA 5HEHA 2BYNA 5L4EA 3JAFA 4LMKA 4HFEA 2VL0A 4TNWA 3U8MA 2ZJUA 4UM3P 4DBMA 3UQ4A 4F8HA 4ALXA 3LSVA 5AFKA 3SIOA 4COFA 3RQUA 5BRXA 3C79A 2BG9E 5L47A 5HEGA 3SQ6A 5AFMB 3U8LA 2WZYA 3UU3A 4EZ1A 3GUAA 2BJ0A 3WTIA 5KZUA 4TWDA 4LMJA 4QABA 3C84A 3RHWA 4D01A 2Y56A 3SQ9A 3UU5A 5AFNA 4QAAA 3TLUA 4PIRA 4A97A 2YMDA 3UU8A 2XQAA 4UM3S 4HQPA 2XQ7A 2YMEA 2C9TA 2Y7YA 3SH1A 3UUBA 4QACA 4ZR6A 2PGZA 4ILCA 3WTJA 3WTMA 3ZKRA 5AINA 3P50A 4HFIA 4ZRUA 5LXBA 2ZJVA 4UXUA 2XQ5A 4LMLA 3U8NA 4ZJSA 2WNCA 5AFHA 4XHEA 3EAMA 1UW6A 4IL9A 5J5GA 3UQ7A 2BYQA 2X00A 4FRRA 4ILBA 5J5HA 5JMEA 2BG9B 3U8KA 5AFLA 4IL4A 2QC1B 2XZ6A 4ZJTA 2XNTA 5BP0A 4NZBA 3WTLA 4A98A 2XQ3A 4HFBA 2BYRA 3P4WA 4UY2A 3WTOA 4XK9A 2XYTA 3PMZA 4AFTA 2YKSA 3U8JA 3RIAA 2YN6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BR8 A;  5AFM A;  5HCM A;  5TVC A;  2XQ9 A;  4UM3 A;  4WV9 A;  3WTH A;  4ILA A;  5J5F A;  2Y54 A;  2BG9 A;  3TLW A;  2XYS A;  4BQT A;  2XQ4 A;  2Y58 A;  3IGQ A;  3TLV A;  2W8G A;  5AFJ A;  3WTN A;  5KE4 A;  4QH4 A;  2XNV A;  3JAD A;  4HFC A;  2PH9 A;  4IRE A;  3ZDG A;  3UU4 A;  2WN9 A;  5CO5 A;  5HEO A;  4AFH A;  3PEO A;  3EHZ A;  4Z90 A;  2WNL A;  2BYS A;  2YOE A;  5IUX A;  4Z91 A;  5J0Z A;  5HEJ A;  2W8F A;  2UZ6 A;  2XZ5 A;  4ZK1 A;  3TLT A;  5HCJ A;  1I9B A;  2XNU A;  1UX2 A;  5L4H A;  2XQ6 A;  5SYO A;  3UU6 A;  4NPP A;  4TWF A;  2Y57 A;  3TLS A;  3RQW A;  5FJV A;  4TNV A;  3RI5 A;  3WIP A;  4HFH A;  2WNJ A;  4ZZC A;  2XQ8 A;  3ZDH A;  5J5I A;  1UV6 A;  4HFD A;  4B5D A;  4BFQ A;  5HEU A;  2X00 D;  3T4M A;  5CFB A;  2BR7 A;  3WTK A;  4QH5 A;  4TWH A;  4ZK4 A;  3EI0 A;  4QH1 A;  5LG3 A;  4UM1 A;  4ZZB A;  2BYP A;  2BG9 C;  4X5T A;  5BW2 A;  3JAE A;  3RIF A;  4AFG A;  5HEH A;  2BYN A;  5L4E A;  3JAF A;  4LMK A;  4HFE A;  2VL0 A;  4TNW A;  3U8M A;  2ZJU A;  4UM3 P;  4DBM A;  3UQ4 A;  4F8H A;  4ALX A;  3LSV A;  5AFK A;  3SIO A;  4COF A;  3RQU A;  5BRX A;  3C79 A;  2BG9 E;  5L47 A;  5HEG A;  3SQ6 A;  5AFM B;  3U8L A;  2WZY A;  3UU3 A;  4EZ1 A;  3GUA A;  2BJ0 A;  3WTI A;  5KZU A;  4TWD A;  4LMJ A;  4QAB A;  3C84 A;  3RHW A;  4D01 A;  2Y56 A;  3SQ9 A;  3UU5 A;  5AFN A;  4QAA A;  3TLU A;  4PIR A;  4A97 A;  2YMD A;  3UU8 A;  2XQA A;  4UM3 S;  4HQP A;  2XQ7 A;  2YME A;  2C9T A;  2Y7Y A;  3SH1 A;  3UUB A;  4QAC A;  4ZR6 A;  2PGZ A;  4ILC A;  3WTJ A;  3WTM A;  3ZKR A;  5AIN A;  3P50 A;  4HFI A;  4ZRU A;  5LXB A;  2ZJV A;  4UXU A;  2XQ5 A;  4LML A;  3U8N A;  4ZJS A;  2WNC A;  5AFH A;  4XHE A;  3EAM A;  1UW6 A;  4IL9 A;  5J5G A;  3UQ7 A;  2BYQ A;  2X00 A;  4FRR A;  4ILB A;  5J5H A;  5JME A;  2BG9 B;  3U8K A;  5AFL A;  4IL4 A;  2QC1 B;  2XZ6 A;  4ZJT A;  2XNT A;  5BP0 A;  4NZB A;  3WTL A;  4A98 A;  2XQ3 A;  4HFB A;  2BYR A;  3P4W A;  4UY2 A;  3WTO A;  4XK9 A;  2XYT A;  3PMZ A;  4AFT A;  2YKS A;  3U8J A;  3RIA A;  2YN6 A; 
#chains in the Genus database with same CATH topology
 2BR8 A;  5AFM A;  5HCM A;  5TVC A;  2XQ9 A;  4UM3 A;  4WV9 A;  3WTH A;  4ILA A;  5J5F A;  2Y54 A;  2BG9 A;  3TLW A;  2XYS A;  4BQT A;  2XQ4 A;  2Y58 A;  3IGQ A;  3TLV A;  2W8G A;  5AFJ A;  3WTN A;  5KE4 A;  4QH4 A;  2XNV A;  3JAD A;  4HFC A;  2PH9 A;  4IRE A;  3ZDG A;  3UU4 A;  2WN9 A;  5CO5 A;  5HEO A;  4AFH A;  3PEO A;  3EHZ A;  4Z90 A;  2WNL A;  2BYS A;  2YOE A;  5IUX A;  4Z91 A;  5J0Z A;  5HEJ A;  2W8F A;  2UZ6 A;  2XZ5 A;  4ZK1 A;  3TLT A;  5HCJ A;  1I9B A;  2XNU A;  1UX2 A;  5L4H A;  2XQ6 A;  5SYO A;  3UU6 A;  4NPP A;  4TWF A;  2Y57 A;  3TLS A;  3RQW A;  5FJV A;  4TNV A;  3RI5 A;  3WIP A;  4HFH A;  2WNJ A;  4ZZC A;  2XQ8 A;  3ZDH A;  5J5I A;  1UV6 A;  4HFD A;  4B5D A;  4BFQ A;  5HEU A;  2X00 D;  3T4M A;  5CFB A;  2BR7 A;  3WTK A;  4QH5 A;  4TWH A;  4ZK4 A;  3EI0 A;  4QH1 A;  5LG3 A;  4UM1 A;  4ZZB A;  2BYP A;  2BG9 C;  4X5T A;  5BW2 A;  3JAE A;  3RIF A;  4AFG A;  5HEH A;  2BYN A;  5L4E A;  3JAF A;  4LMK A;  4HFE A;  2VL0 A;  4TNW A;  3U8M A;  2ZJU A;  4UM3 P;  4DBM A;  3UQ4 A;  4F8H A;  4ALX A;  3LSV A;  5AFK A;  3SIO A;  4COF A;  3RQU A;  5BRX A;  3C79 A;  2BG9 E;  5L47 A;  5HEG A;  3SQ6 A;  5AFM B;  3U8L A;  2WZY A;  3UU3 A;  4EZ1 A;  3GUA A;  2BJ0 A;  3WTI A;  5KZU A;  4TWD A;  4LMJ A;  4QAB A;  3C84 A;  3RHW A;  4D01 A;  2Y56 A;  3SQ9 A;  3UU5 A;  5AFN A;  4QAA A;  3TLU A;  4PIR A;  4A97 A;  2YMD A;  3UU8 A;  2XQA A;  4UM3 S;  4HQP A;  2XQ7 A;  2YME A;  2C9T A;  2Y7Y A;  3SH1 A;  3UUB A;  4QAC A;  4ZR6 A;  2PGZ A;  4ILC A;  3WTJ A;  3WTM A;  3ZKR A;  5AIN A;  3P50 A;  4HFI A;  4ZRU A;  5LXB A;  2ZJV A;  4UXU A;  2XQ5 A;  4LML A;  3U8N A;  4ZJS A;  2WNC A;  5AFH A;  4XHE A;  3EAM A;  1UW6 A;  4IL9 A;  5J5G A;  3UQ7 A;  2BYQ A;  2X00 A;  4FRR A;  4ILB A;  5J5H A;  5JME A;  2BG9 B;  3U8K A;  5AFL A;  4IL4 A;  2QC1 B;  2XZ6 A;  4ZJT A;  2XNT A;  5BP0 A;  4NZB A;  3WTL A;  4A98 A;  2XQ3 A;  4HFB A;  2BYR A;  3P4W A;  4UY2 A;  3WTO A;  4XK9 A;  2XYT A;  3PMZ A;  4AFT A;  2YKS A;  3U8J A;  3RIA A;  2YN6 A; 
#chains in the Genus database with same CATH homology
 2BR8 A;  5AFM A;  5HCM A;  5TVC A;  2XQ9 A;  4UM3 A;  4WV9 A;  3WTH A;  4ILA A;  5J5F A;  2Y54 A;  2BG9 A;  3TLW A;  2XYS A;  4BQT A;  2XQ4 A;  2Y58 A;  3IGQ A;  3TLV A;  2W8G A;  5AFJ A;  3WTN A;  5KE4 A;  4QH4 A;  2XNV A;  3JAD A;  4HFC A;  2PH9 A;  4IRE A;  3ZDG A;  3UU4 A;  2WN9 A;  5CO5 A;  5HEO A;  4AFH A;  3PEO A;  3EHZ A;  4Z90 A;  2WNL A;  2BYS A;  2YOE A;  5IUX A;  4Z91 A;  5J0Z A;  5HEJ A;  2W8F A;  2UZ6 A;  2XZ5 A;  4ZK1 A;  3TLT A;  5HCJ A;  1I9B A;  2XNU A;  1UX2 A;  5L4H A;  2XQ6 A;  5SYO A;  3UU6 A;  4NPP A;  4TWF A;  2Y57 A;  3TLS A;  3RQW A;  5FJV A;  4TNV A;  3RI5 A;  3WIP A;  4HFH A;  2WNJ A;  4ZZC A;  2XQ8 A;  3ZDH A;  5J5I A;  1UV6 A;  4HFD A;  4B5D A;  4BFQ A;  5HEU A;  2X00 D;  3T4M A;  5CFB A;  2BR7 A;  3WTK A;  4QH5 A;  4TWH A;  4ZK4 A;  3EI0 A;  4QH1 A;  5LG3 A;  4UM1 A;  4ZZB A;  2BYP A;  2BG9 C;  4X5T A;  5BW2 A;  3JAE A;  3RIF A;  4AFG A;  5HEH A;  2BYN A;  5L4E A;  3JAF A;  4LMK A;  4HFE A;  2VL0 A;  4TNW A;  3U8M A;  2ZJU A;  4UM3 P;  4DBM A;  3UQ4 A;  4F8H A;  4ALX A;  3LSV A;  5AFK A;  3SIO A;  4COF A;  3RQU A;  5BRX A;  3C79 A;  2BG9 E;  5L47 A;  5HEG A;  3SQ6 A;  5AFM B;  3U8L A;  2WZY A;  3UU3 A;  4EZ1 A;  3GUA A;  2BJ0 A;  3WTI A;  5KZU A;  4TWD A;  4LMJ A;  4QAB A;  3C84 A;  3RHW A;  4D01 A;  2Y56 A;  3SQ9 A;  3UU5 A;  5AFN A;  4QAA A;  3TLU A;  4PIR A;  4A97 A;  2YMD A;  3UU8 A;  2XQA A;  4UM3 S;  4HQP A;  2XQ7 A;  2YME A;  2C9T A;  2Y7Y A;  3SH1 A;  3UUB A;  4QAC A;  4ZR6 A;  2PGZ A;  4ILC A;  3WTJ A;  3WTM A;  3ZKR A;  5AIN A;  3P50 A;  4HFI A;  4ZRU A;  5LXB A;  2ZJV A;  4UXU A;  2XQ5 A;  4LML A;  3U8N A;  4ZJS A;  2WNC A;  5AFH A;  4XHE A;  3EAM A;  1UW6 A;  4IL9 A;  5J5G A;  3UQ7 A;  2BYQ A;  2X00 A;  4FRR A;  4ILB A;  5J5H A;  5JME A;  2BG9 B;  3U8K A;  5AFL A;  4IL4 A;  2QC1 B;  2XZ6 A;  4ZJT A;  2XNT A;  5BP0 A;  4NZB A;  3WTL A;  4A98 A;  2XQ3 A;  4HFB A;  2BYR A;  3P4W A;  4UY2 A;  3WTO A;  4XK9 A;  2XYT A;  3PMZ A;  4AFT A;  2YKS A;  3U8J A;  3RIA A;  2YN6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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