2Y54A

Fragment growing induces conformational changes in acetylcholine- binding protein: a structural and thermodynamic analysis - (fragment 1)
Total Genus 43
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
205
structure length
205
Chain Sequence
b'QANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKVDSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGVTCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Fragment Growing Induces Conformational Changes in Acetylcholine-Binding Protein: A Structural and Thermodynamic Analysis.
pubmed doi rcsb
molecule keywords SOLUBLE ACETYLCHOLINE RECEPTOR
source organism Aplysia californica
molecule tags Receptor
total genus 43
structure length 205
sequence length 205
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2011-01-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 2y54A00
4AFTA 3WTMA 5SYOA 4HFIA 2BYRA 4AFHA 3U8JA 1UV6A 4NPPA 5L4EA 4HQPA 2UZ6A 2YMEA 2X00D 3JAEA 4IL4A 3WTJA 2XQ5A 2W8GA 4ZJTA 2QC1B 2BYPA 3EI0A 4HFBA 5IUXA 3SQ6A 3UUBA 3UU5A 4HFCA 3SH1A 3UQ4A 2XQ6A 3RIFA 3RIAA 2WNJA 2VL0A 2WNLA 2WNCA 4Z91A 3U8LA 3WTKA 4BQTA 2Y56A 4QH5A 3RQUA 3TLUA 3UU3A 5J5HA 2BYQA 3SIOA 4HFDA 5HCMA 2ZJUA 2BG9A 4UM3A 5AFNA 5BW2A 3WIPA 2YOEA 2BR8A 2XNTA 4HFHA 5CFBA 4QACA 4QH4A 5L47A 4UM1A 2Y7YA 4A97A 5LG3A 5KZUA 4WV9A 2BYSA 2XQ7A 4HFEA 4ILAA 5HEGA 4UM3S 5AINA 2XZ6A 5AFMA 4QABA 5HEJA 3ZKRA 2WZYA 5J0ZA 3U8MA 3WTNA 3TLSA 3U8NA 2C9TA 5JMEA 4ZR6A 3P4WA 4D01A 3ZDGA 5FJVA 4UM3P 5BRXA 3C79A 1I9BA 2XQ8A 2Y58A 3TLWA 2YN6A 4TWFA 4F8HA 2Y54A 3UU6A 4ZZCA 3C84A 3UQ7A 4TNVA 5L4HA 4XK9A 3RHWA 5J5FA 2PH9A 5KE4A 3JADA 4UY2A 5BP0A 2BR7A 5AFJA 2BG9C 5AFHA 4ZK4A 3PMZA 4ILBA 2XNVA 4AFGA 2BG9B 5HEHA 4ZZBA 2WN9A 4B5DA 2XYSA 3U8KA 1UX2A 3WTIA 4COFA 2X00A 4ILCA 3LSVA 4UXUA 4QH1A 2XYTA 4TWHA 3SQ9A 4IREA 2BYNA 4LMKA 4Z90A 4XHEA 2BJ0A 3IGQA 5AFMB 5AFLA 3EAMA 4LMJA 3TLVA 3WTOA 5AFKA 3WTLA 5HCJA 2ZJVA 3GUAA 4PIRA 3T4MA 3UU8A 4ALXA 4QAAA 5TVCA 2XNUA 4DBMA 2XQAA 4TNWA 5CO5A 4ZK1A 2Y57A 5J5GA 2XQ4A 4BFQA 4EZ1A 3PEOA 3WTHA 4IL9A 3RI5A 2YKSA 4LMLA 3UU4A 4NZBA 4TWDA 5HEUA 3TLTA 2XZ5A 2PGZA 2XQ3A 5HEOA 2W8FA 3EHZA 3P50A 4ZJSA 2XQ9A 3JAFA 2YMDA 5J5IA 3RQWA 3ZDHA 2BG9E 4X5TA 4ZRUA 4A98A 1UW6A 5LXBA 4FRRA
chains in the Genus database with same CATH superfamily
4AFTA 3WTMA 5SYOA 4HFIA 2BYRA 4AFHA 3U8JA 1UV6A 4NPPA 5L4EA 4HQPA 2UZ6A 2YMEA 2X00D 3JAEA 4IL4A 3WTJA 2XQ5A 2W8GA 4ZJTA 2QC1B 2BYPA 3EI0A 4HFBA 5IUXA 3SQ6A 3UUBA 3UU5A 4HFCA 3SH1A 3UQ4A 2XQ6A 3RIFA 3RIAA 2WNJA 2VL0A 2WNLA 2WNCA 4Z91A 3U8LA 3WTKA 4BQTA 2Y56A 4QH5A 3RQUA 3TLUA 3UU3A 5J5HA 2BYQA 3SIOA 4HFDA 5HCMA 2ZJUA 2BG9A 4UM3A 5AFNA 5BW2A 3WIPA 2YOEA 2BR8A 2XNTA 4HFHA 5CFBA 4QACA 4QH4A 5L47A 4UM1A 2Y7YA 4A97A 5LG3A 5KZUA 4WV9A 2BYSA 2XQ7A 4HFEA 4ILAA 5HEGA 4UM3S 5AINA 2XZ6A 5AFMA 4QABA 5HEJA 3ZKRA 2WZYA 5J0ZA 3U8MA 3WTNA 3TLSA 3U8NA 2C9TA 5JMEA 4ZR6A 3P4WA 4D01A 3ZDGA 5FJVA 4UM3P 5BRXA 3C79A 1I9BA 2XQ8A 2Y58A 3TLWA 2YN6A 4TWFA 4F8HA 2Y54A 3UU6A 4ZZCA 3C84A 3UQ7A 4TNVA 5L4HA 4XK9A 3RHWA 5J5FA 2PH9A 5KE4A 3JADA 4UY2A 5BP0A 2BR7A 5AFJA 2BG9C 5AFHA 4ZK4A 3PMZA 4ILBA 2XNVA 4AFGA 2BG9B 5HEHA 4ZZBA 2WN9A 4B5DA 2XYSA 3U8KA 1UX2A 3WTIA 4COFA 2X00A 4ILCA 3LSVA 4UXUA 4QH1A 2XYTA 4TWHA 3SQ9A 4IREA 2BYNA 4LMKA 4Z90A 4XHEA 2BJ0A 3IGQA 5AFMB 5AFLA 3EAMA 4LMJA 3TLVA 3WTOA 5AFKA 3WTLA 5HCJA 2ZJVA 3GUAA 4PIRA 3T4MA 3UU8A 4ALXA 4QAAA 5TVCA 2XNUA 4DBMA 2XQAA 4TNWA 5CO5A 4ZK1A 2Y57A 5J5GA 2XQ4A 4BFQA 4EZ1A 3PEOA 3WTHA 4IL9A 3RI5A 2YKSA 4LMLA 3UU4A 4NZBA 4TWDA 5HEUA 3TLTA 2XZ5A 2PGZA 2XQ3A 5HEOA 2W8FA 3EHZA 3P50A 4ZJSA 2XQ9A 3JAFA 2YMDA 5J5IA 3RQWA 3ZDHA 2BG9E 4X5TA 4ZRUA 4A98A 1UW6A 5LXBA 4FRRA
chains in the Genus database with same CATH topology
4AFTA 3WTMA 5SYOA 4HFIA 2BYRA 4AFHA 3U8JA 1UV6A 4NPPA 5L4EA 4HQPA 2UZ6A 2YMEA 2X00D 3JAEA 4IL4A 3WTJA 2XQ5A 2W8GA 4ZJTA 2QC1B 2BYPA 3EI0A 4HFBA 5IUXA 3SQ6A 3UUBA 3UU5A 4HFCA 3SH1A 3UQ4A 2XQ6A 3RIFA 3RIAA 2WNJA 2VL0A 2WNLA 2WNCA 4Z91A 3U8LA 3WTKA 4BQTA 2Y56A 4QH5A 3RQUA 3TLUA 3UU3A 5J5HA 2BYQA 3SIOA 4HFDA 5HCMA 2ZJUA 2BG9A 4UM3A 5AFNA 5BW2A 3WIPA 2YOEA 2BR8A 2XNTA 4HFHA 5CFBA 4QACA 4QH4A 5L47A 4UM1A 2Y7YA 4A97A 5LG3A 5KZUA 4WV9A 2BYSA 2XQ7A 4HFEA 4ILAA 5HEGA 4UM3S 5AINA 2XZ6A 5AFMA 4QABA 5HEJA 3ZKRA 2WZYA 5J0ZA 3U8MA 3WTNA 3TLSA 3U8NA 2C9TA 5JMEA 4ZR6A 3P4WA 4D01A 3ZDGA 5FJVA 4UM3P 5BRXA 3C79A 1I9BA 2XQ8A 2Y58A 3TLWA 2YN6A 4TWFA 4F8HA 2Y54A 3UU6A 4ZZCA 3C84A 3UQ7A 4TNVA 5L4HA 4XK9A 3RHWA 5J5FA 2PH9A 5KE4A 3JADA 4UY2A 5BP0A 2BR7A 5AFJA 2BG9C 5AFHA 4ZK4A 3PMZA 4ILBA 2XNVA 4AFGA 2BG9B 5HEHA 4ZZBA 2WN9A 4B5DA 2XYSA 3U8KA 1UX2A 3WTIA 4COFA 2X00A 4ILCA 3LSVA 4UXUA 4QH1A 2XYTA 4TWHA 3SQ9A 4IREA 2BYNA 4LMKA 4Z90A 4XHEA 2BJ0A 3IGQA 5AFMB 5AFLA 3EAMA 4LMJA 3TLVA 3WTOA 5AFKA 3WTLA 5HCJA 2ZJVA 3GUAA 4PIRA 3T4MA 3UU8A 4ALXA 4QAAA 5TVCA 2XNUA 4DBMA 2XQAA 4TNWA 5CO5A 4ZK1A 2Y57A 5J5GA 2XQ4A 4BFQA 4EZ1A 3PEOA 3WTHA 4IL9A 3RI5A 2YKSA 4LMLA 3UU4A 4NZBA 4TWDA 5HEUA 3TLTA 2XZ5A 2PGZA 2XQ3A 5HEOA 2W8FA 3EHZA 3P50A 4ZJSA 2XQ9A 3JAFA 2YMDA 5J5IA 3RQWA 3ZDHA 2BG9E 4X5TA 4ZRUA 4A98A 1UW6A 5LXBA 4FRRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AFT A;  3WTM A;  5SYO A;  4HFI A;  2BYR A;  4AFH A;  3U8J A;  1UV6 A;  4NPP A;  5L4E A;  4HQP A;  2UZ6 A;  2YME A;  2X00 D;  3JAE A;  4IL4 A;  3WTJ A;  2XQ5 A;  2W8G A;  4ZJT A;  2QC1 B;  2BYP A;  3EI0 A;  4HFB A;  5IUX A;  3SQ6 A;  3UUB A;  3UU5 A;  4HFC A;  3SH1 A;  3UQ4 A;  2XQ6 A;  3RIF A;  3RIA A;  2WNJ A;  2VL0 A;  2WNL A;  2WNC A;  4Z91 A;  3U8L A;  3WTK A;  4BQT A;  2Y56 A;  4QH5 A;  3RQU A;  3TLU A;  3UU3 A;  5J5H A;  2BYQ A;  3SIO A;  4HFD A;  5HCM A;  2ZJU A;  2BG9 A;  4UM3 A;  5AFN A;  5BW2 A;  3WIP A;  2YOE A;  2BR8 A;  2XNT A;  4HFH A;  5CFB A;  4QAC A;  4QH4 A;  5L47 A;  4UM1 A;  2Y7Y A;  4A97 A;  5LG3 A;  5KZU A;  4WV9 A;  2BYS A;  2XQ7 A;  4HFE A;  4ILA A;  5HEG A;  4UM3 S;  5AIN A;  2XZ6 A;  5AFM A;  4QAB A;  5HEJ A;  3ZKR A;  2WZY A;  5J0Z A;  3U8M A;  3WTN A;  3TLS A;  3U8N A;  2C9T A;  5JME A;  4ZR6 A;  3P4W A;  4D01 A;  3ZDG A;  5FJV A;  4UM3 P;  5BRX A;  3C79 A;  1I9B A;  2XQ8 A;  2Y58 A;  3TLW A;  2YN6 A;  4TWF A;  4F8H A;  2Y54 A;  3UU6 A;  4ZZC A;  3C84 A;  3UQ7 A;  4TNV A;  5L4H A;  4XK9 A;  3RHW A;  5J5F A;  2PH9 A;  5KE4 A;  3JAD A;  4UY2 A;  5BP0 A;  2BR7 A;  5AFJ A;  2BG9 C;  5AFH A;  4ZK4 A;  3PMZ A;  4ILB A;  2XNV A;  4AFG A;  2BG9 B;  5HEH A;  4ZZB A;  2WN9 A;  4B5D A;  2XYS A;  3U8K A;  1UX2 A;  3WTI A;  4COF A;  2X00 A;  4ILC A;  3LSV A;  4UXU A;  4QH1 A;  2XYT A;  4TWH A;  3SQ9 A;  4IRE A;  2BYN A;  4LMK A;  4Z90 A;  4XHE A;  2BJ0 A;  3IGQ A;  5AFM B;  5AFL A;  3EAM A;  4LMJ A;  3TLV A;  3WTO A;  5AFK A;  3WTL A;  5HCJ A;  2ZJV A;  3GUA A;  4PIR A;  3T4M A;  3UU8 A;  4ALX A;  4QAA A;  5TVC A;  2XNU A;  4DBM A;  2XQA A;  4TNW A;  5CO5 A;  4ZK1 A;  2Y57 A;  5J5G A;  2XQ4 A;  4BFQ A;  4EZ1 A;  3PEO A;  3WTH A;  4IL9 A;  3RI5 A;  2YKS A;  4LML A;  3UU4 A;  4NZB A;  4TWD A;  5HEU A;  3TLT A;  2XZ5 A;  2PGZ A;  2XQ3 A;  5HEO A;  2W8F A;  3EHZ A;  3P50 A;  4ZJS A;  2XQ9 A;  3JAF A;  2YMD A;  5J5I A;  3RQW A;  3ZDH A;  2BG9 E;  4X5T A;  4ZRU A;  4A98 A;  1UW6 A;  5LXB A;  4FRR A; 
#chains in the Genus database with same CATH topology
 4AFT A;  3WTM A;  5SYO A;  4HFI A;  2BYR A;  4AFH A;  3U8J A;  1UV6 A;  4NPP A;  5L4E A;  4HQP A;  2UZ6 A;  2YME A;  2X00 D;  3JAE A;  4IL4 A;  3WTJ A;  2XQ5 A;  2W8G A;  4ZJT A;  2QC1 B;  2BYP A;  3EI0 A;  4HFB A;  5IUX A;  3SQ6 A;  3UUB A;  3UU5 A;  4HFC A;  3SH1 A;  3UQ4 A;  2XQ6 A;  3RIF A;  3RIA A;  2WNJ A;  2VL0 A;  2WNL A;  2WNC A;  4Z91 A;  3U8L A;  3WTK A;  4BQT A;  2Y56 A;  4QH5 A;  3RQU A;  3TLU A;  3UU3 A;  5J5H A;  2BYQ A;  3SIO A;  4HFD A;  5HCM A;  2ZJU A;  2BG9 A;  4UM3 A;  5AFN A;  5BW2 A;  3WIP A;  2YOE A;  2BR8 A;  2XNT A;  4HFH A;  5CFB A;  4QAC A;  4QH4 A;  5L47 A;  4UM1 A;  2Y7Y A;  4A97 A;  5LG3 A;  5KZU A;  4WV9 A;  2BYS A;  2XQ7 A;  4HFE A;  4ILA A;  5HEG A;  4UM3 S;  5AIN A;  2XZ6 A;  5AFM A;  4QAB A;  5HEJ A;  3ZKR A;  2WZY A;  5J0Z A;  3U8M A;  3WTN A;  3TLS A;  3U8N A;  2C9T A;  5JME A;  4ZR6 A;  3P4W A;  4D01 A;  3ZDG A;  5FJV A;  4UM3 P;  5BRX A;  3C79 A;  1I9B A;  2XQ8 A;  2Y58 A;  3TLW A;  2YN6 A;  4TWF A;  4F8H A;  2Y54 A;  3UU6 A;  4ZZC A;  3C84 A;  3UQ7 A;  4TNV A;  5L4H A;  4XK9 A;  3RHW A;  5J5F A;  2PH9 A;  5KE4 A;  3JAD A;  4UY2 A;  5BP0 A;  2BR7 A;  5AFJ A;  2BG9 C;  5AFH A;  4ZK4 A;  3PMZ A;  4ILB A;  2XNV A;  4AFG A;  2BG9 B;  5HEH A;  4ZZB A;  2WN9 A;  4B5D A;  2XYS A;  3U8K A;  1UX2 A;  3WTI A;  4COF A;  2X00 A;  4ILC A;  3LSV A;  4UXU A;  4QH1 A;  2XYT A;  4TWH A;  3SQ9 A;  4IRE A;  2BYN A;  4LMK A;  4Z90 A;  4XHE A;  2BJ0 A;  3IGQ A;  5AFM B;  5AFL A;  3EAM A;  4LMJ A;  3TLV A;  3WTO A;  5AFK A;  3WTL A;  5HCJ A;  2ZJV A;  3GUA A;  4PIR A;  3T4M A;  3UU8 A;  4ALX A;  4QAA A;  5TVC A;  2XNU A;  4DBM A;  2XQA A;  4TNW A;  5CO5 A;  4ZK1 A;  2Y57 A;  5J5G A;  2XQ4 A;  4BFQ A;  4EZ1 A;  3PEO A;  3WTH A;  4IL9 A;  3RI5 A;  2YKS A;  4LML A;  3UU4 A;  4NZB A;  4TWD A;  5HEU A;  3TLT A;  2XZ5 A;  2PGZ A;  2XQ3 A;  5HEO A;  2W8F A;  3EHZ A;  3P50 A;  4ZJS A;  2XQ9 A;  3JAF A;  2YMD A;  5J5I A;  3RQW A;  3ZDH A;  2BG9 E;  4X5T A;  4ZRU A;  4A98 A;  1UW6 A;  5LXB A;  4FRR A; 
#chains in the Genus database with same CATH homology
 4AFT A;  3WTM A;  5SYO A;  4HFI A;  2BYR A;  4AFH A;  3U8J A;  1UV6 A;  4NPP A;  5L4E A;  4HQP A;  2UZ6 A;  2YME A;  2X00 D;  3JAE A;  4IL4 A;  3WTJ A;  2XQ5 A;  2W8G A;  4ZJT A;  2QC1 B;  2BYP A;  3EI0 A;  4HFB A;  5IUX A;  3SQ6 A;  3UUB A;  3UU5 A;  4HFC A;  3SH1 A;  3UQ4 A;  2XQ6 A;  3RIF A;  3RIA A;  2WNJ A;  2VL0 A;  2WNL A;  2WNC A;  4Z91 A;  3U8L A;  3WTK A;  4BQT A;  2Y56 A;  4QH5 A;  3RQU A;  3TLU A;  3UU3 A;  5J5H A;  2BYQ A;  3SIO A;  4HFD A;  5HCM A;  2ZJU A;  2BG9 A;  4UM3 A;  5AFN A;  5BW2 A;  3WIP A;  2YOE A;  2BR8 A;  2XNT A;  4HFH A;  5CFB A;  4QAC A;  4QH4 A;  5L47 A;  4UM1 A;  2Y7Y A;  4A97 A;  5LG3 A;  5KZU A;  4WV9 A;  2BYS A;  2XQ7 A;  4HFE A;  4ILA A;  5HEG A;  4UM3 S;  5AIN A;  2XZ6 A;  5AFM A;  4QAB A;  5HEJ A;  3ZKR A;  2WZY A;  5J0Z A;  3U8M A;  3WTN A;  3TLS A;  3U8N A;  2C9T A;  5JME A;  4ZR6 A;  3P4W A;  4D01 A;  3ZDG A;  5FJV A;  4UM3 P;  5BRX A;  3C79 A;  1I9B A;  2XQ8 A;  2Y58 A;  3TLW A;  2YN6 A;  4TWF A;  4F8H A;  2Y54 A;  3UU6 A;  4ZZC A;  3C84 A;  3UQ7 A;  4TNV A;  5L4H A;  4XK9 A;  3RHW A;  5J5F A;  2PH9 A;  5KE4 A;  3JAD A;  4UY2 A;  5BP0 A;  2BR7 A;  5AFJ A;  2BG9 C;  5AFH A;  4ZK4 A;  3PMZ A;  4ILB A;  2XNV A;  4AFG A;  2BG9 B;  5HEH A;  4ZZB A;  2WN9 A;  4B5D A;  2XYS A;  3U8K A;  1UX2 A;  3WTI A;  4COF A;  2X00 A;  4ILC A;  3LSV A;  4UXU A;  4QH1 A;  2XYT A;  4TWH A;  3SQ9 A;  4IRE A;  2BYN A;  4LMK A;  4Z90 A;  4XHE A;  2BJ0 A;  3IGQ A;  5AFM B;  5AFL A;  3EAM A;  4LMJ A;  3TLV A;  3WTO A;  5AFK A;  3WTL A;  5HCJ A;  2ZJV A;  3GUA A;  4PIR A;  3T4M A;  3UU8 A;  4ALX A;  4QAA A;  5TVC A;  2XNU A;  4DBM A;  2XQA A;  4TNW A;  5CO5 A;  4ZK1 A;  2Y57 A;  5J5G A;  2XQ4 A;  4BFQ A;  4EZ1 A;  3PEO A;  3WTH A;  4IL9 A;  3RI5 A;  2YKS A;  4LML A;  3UU4 A;  4NZB A;  4TWD A;  5HEU A;  3TLT A;  2XZ5 A;  2PGZ A;  2XQ3 A;  5HEO A;  2W8F A;  3EHZ A;  3P50 A;  4ZJS A;  2XQ9 A;  3JAF A;  2YMD A;  5J5I A;  3RQW A;  3ZDH A;  2BG9 E;  4X5T A;  4ZRU A;  4A98 A;  1UW6 A;  5LXB A;  4FRR A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...