2Y54A

Fragment growing induces conformational changes in acetylcholine- binding protein: a structural and thermodynamic analysis - (fragment 1)
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
205
structure length
205
Chain Sequence
QANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKVDSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGVTCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Receptor
source organism Aplysia californica
publication title Fragment Growing Induces Conformational Changes in Acetylcholine-Binding Protein: A Structural and Thermodynamic Analysis.
pubmed doi rcsb
molecule keywords SOLUBLE ACETYLCHOLINE RECEPTOR
total genus 43
structure length 205
sequence length 205
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2011-01-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 2y54A00
4D01A 4TNVA 4HFHA 3U8NA 3RIAA 5BRXA 3PEOA 4IL4A 3UU5A 3UU8A 2QC1B 3C84A 2BR7A 5HEUA 4NZBA 3ZDHA 2BG9C 4XK9A 5J5GA 3U8MA 3PMZA 4HFDA 4LMLA 4ZRUA 5L47A 2W8FA 4HFCA 2Y54A 3LSVA 2X00D 3C79A 5AFHA 2BG9E 2BYSA 2BYRA 2XZ6A 5HEGA 3TLVA 3ZDGA 5LG3A 4QACA 2Y57A 4HFEA 3WTHA 4IL9A 2XQ9A 3WTNA 5CFBA 3U8JA 5SYOA 2WNLA 5KZUA 4A97A 4ZJTA 5J0ZA 4UM3S 5J5FA 2Y56A 5BW2A 3SH1A 5L4EA 4COFA 5AFLA 3IGQA 3WTJA 4QH1A 4ZJSA 3P4WA 4HFIA 5HEOA 4TWFA 3SQ6A 3U8LA 4QH5A 2XYSA 3ZKRA 5TVCA 3GUAA 3WTOA 5CO5A 4ALXA 5AFMA 2XZ5A 3JAEA 4A98A 2BYQA 2YMEA 2BG9B 5HCMA 3UUBA 3RQUA 3WTLA 4BQTA 3UQ4A 3WTIA 5FJVA 4TWHA 2XQAA 2WNJA 5HEHA 2Y7YA 4ZK4A 2ZJUA 4UY2A 4LMKA 2UZ6A 4AFTA 4ILCA 4B5DA 5AFKA 3RIFA 5HEJA 4ZR6A 1UX2A 5KE4A 5L4HA 3TLUA 3JAFA 5J5IA 4ZZCA 2XQ5A 2WZYA 4ILBA 4UM3A 4AFGA 3P50A 4TNWA 4ZZBA 2X00A 1UV6A 5AFNA 2YOEA 5AINA 5J5HA 3SQ9A 4DBMA 2YKSA 3EHZA 2WN9A 4HFBA 2PGZA 4IREA 3JADA 4BFQA 4AFHA 4UM1A 2YN6A 4ILAA 2XQ6A 2XQ8A 3WIPA 3RQWA 3RHWA 4X5TA 5HCJA 2XQ7A 5LXBA 4Z90A 2XQ3A 4TWDA 2BYPA 3RI5A 2BJ0A 5IUXA 2C9TA 3EAMA 3UQ7A 4HQPA 2XYTA 4WV9A 1UW6A 3TLTA 3WTMA 3SIOA 4QH4A 2WNCA 2ZJVA 3T4MA 2Y58A 2XNUA 3UU6A 1I9BA 5JMEA 4UXUA 4UM3P 2BR8A 4NPPA 5BP0A 3UU3A 4QAAA 2YMDA 2VL0A 4F8HA 4LMJA 2BYNA 3U8KA 4FRRA 4XHEA 3UU4A 2BG9A 5AFJA 2XNVA 5AFMB 4ZK1A 4PIRA 2XNTA 2W8GA 3EI0A 4QABA 3WTKA 4Z91A 2PH9A 3TLWA 4EZ1A 3TLSA 2XQ4A
chains in the Genus database with same CATH superfamily
4D01A 4TNVA 4HFHA 3U8NA 3RIAA 5BRXA 3PEOA 4IL4A 3UU5A 3UU8A 2QC1B 3C84A 2BR7A 5HEUA 4NZBA 3ZDHA 2BG9C 4XK9A 5J5GA 3U8MA 3PMZA 4HFDA 4LMLA 4ZRUA 5L47A 2W8FA 4HFCA 2Y54A 3LSVA 2X00D 3C79A 5AFHA 2BG9E 2BYSA 2BYRA 2XZ6A 5HEGA 3TLVA 3ZDGA 5LG3A 4QACA 2Y57A 4HFEA 3WTHA 4IL9A 2XQ9A 3WTNA 5CFBA 3U8JA 5SYOA 2WNLA 5KZUA 4A97A 4ZJTA 5J0ZA 4UM3S 5J5FA 2Y56A 5BW2A 3SH1A 5L4EA 4COFA 5AFLA 3IGQA 3WTJA 4QH1A 4ZJSA 3P4WA 4HFIA 5HEOA 4TWFA 3SQ6A 3U8LA 4QH5A 2XYSA 3ZKRA 5TVCA 3GUAA 3WTOA 5CO5A 4ALXA 5AFMA 2XZ5A 3JAEA 4A98A 2BYQA 2YMEA 2BG9B 5HCMA 3UUBA 3RQUA 3WTLA 4BQTA 3UQ4A 3WTIA 5FJVA 4TWHA 2XQAA 2WNJA 5HEHA 2Y7YA 4ZK4A 2ZJUA 4UY2A 4LMKA 2UZ6A 4AFTA 4ILCA 4B5DA 5AFKA 3RIFA 5HEJA 4ZR6A 1UX2A 5KE4A 5L4HA 3TLUA 3JAFA 5J5IA 4ZZCA 2XQ5A 2WZYA 4ILBA 4UM3A 4AFGA 3P50A 4TNWA 4ZZBA 2X00A 1UV6A 5AFNA 2YOEA 5AINA 5J5HA 3SQ9A 4DBMA 2YKSA 3EHZA 2WN9A 4HFBA 2PGZA 4IREA 3JADA 4BFQA 4AFHA 4UM1A 2YN6A 4ILAA 2XQ6A 2XQ8A 3WIPA 3RQWA 3RHWA 4X5TA 5HCJA 2XQ7A 5LXBA 4Z90A 2XQ3A 4TWDA 2BYPA 3RI5A 2BJ0A 5IUXA 2C9TA 3EAMA 3UQ7A 4HQPA 2XYTA 4WV9A 1UW6A 3TLTA 3WTMA 3SIOA 4QH4A 2WNCA 2ZJVA 3T4MA 2Y58A 2XNUA 3UU6A 1I9BA 5JMEA 4UXUA 4UM3P 2BR8A 4NPPA 5BP0A 3UU3A 4QAAA 2YMDA 2VL0A 4F8HA 4LMJA 2BYNA 3U8KA 4FRRA 4XHEA 3UU4A 2BG9A 5AFJA 2XNVA 5AFMB 4ZK1A 4PIRA 2XNTA 2W8GA 3EI0A 4QABA 3WTKA 4Z91A 2PH9A 3TLWA 4EZ1A 3TLSA 2XQ4A
chains in the Genus database with same CATH topology
4D01A 4TNVA 4HFHA 3U8NA 3RIAA 5BRXA 3PEOA 4IL4A 3UU5A 3UU8A 2QC1B 3C84A 2BR7A 5HEUA 4NZBA 3ZDHA 2BG9C 4XK9A 5J5GA 3U8MA 3PMZA 4HFDA 4LMLA 4ZRUA 5L47A 2W8FA 4HFCA 2Y54A 3LSVA 2X00D 3C79A 5AFHA 2BG9E 2BYSA 2BYRA 2XZ6A 5HEGA 3TLVA 3ZDGA 5LG3A 4QACA 2Y57A 4HFEA 3WTHA 4IL9A 2XQ9A 3WTNA 5CFBA 3U8JA 5SYOA 2WNLA 5KZUA 4A97A 4ZJTA 5J0ZA 4UM3S 5J5FA 2Y56A 5BW2A 3SH1A 5L4EA 4COFA 5AFLA 3IGQA 3WTJA 4QH1A 4ZJSA 3P4WA 4HFIA 5HEOA 4TWFA 3SQ6A 3U8LA 4QH5A 2XYSA 3ZKRA 5TVCA 3GUAA 3WTOA 5CO5A 4ALXA 5AFMA 2XZ5A 3JAEA 4A98A 2BYQA 2YMEA 2BG9B 5HCMA 3UUBA 3RQUA 3WTLA 4BQTA 3UQ4A 3WTIA 5FJVA 4TWHA 2XQAA 2WNJA 5HEHA 2Y7YA 4ZK4A 2ZJUA 4UY2A 4LMKA 2UZ6A 4AFTA 4ILCA 4B5DA 5AFKA 3RIFA 5HEJA 4ZR6A 1UX2A 5KE4A 5L4HA 3TLUA 3JAFA 5J5IA 4ZZCA 2XQ5A 2WZYA 4ILBA 4UM3A 4AFGA 3P50A 4TNWA 4ZZBA 2X00A 1UV6A 5AFNA 2YOEA 5AINA 5J5HA 3SQ9A 4DBMA 2YKSA 3EHZA 2WN9A 4HFBA 2PGZA 4IREA 3JADA 4BFQA 4AFHA 4UM1A 2YN6A 4ILAA 2XQ6A 2XQ8A 3WIPA 3RQWA 3RHWA 4X5TA 5HCJA 2XQ7A 5LXBA 4Z90A 2XQ3A 4TWDA 2BYPA 3RI5A 2BJ0A 5IUXA 2C9TA 3EAMA 3UQ7A 4HQPA 2XYTA 4WV9A 1UW6A 3TLTA 3WTMA 3SIOA 4QH4A 2WNCA 2ZJVA 3T4MA 2Y58A 2XNUA 3UU6A 1I9BA 5JMEA 4UXUA 4UM3P 2BR8A 4NPPA 5BP0A 3UU3A 4QAAA 2YMDA 2VL0A 4F8HA 4LMJA 2BYNA 3U8KA 4FRRA 4XHEA 3UU4A 2BG9A 5AFJA 2XNVA 5AFMB 4ZK1A 4PIRA 2XNTA 2W8GA 3EI0A 4QABA 3WTKA 4Z91A 2PH9A 3TLWA 4EZ1A 3TLSA 2XQ4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4D01 A;  4TNV A;  4HFH A;  3U8N A;  3RIA A;  5BRX A;  3PEO A;  4IL4 A;  3UU5 A;  3UU8 A;  2QC1 B;  3C84 A;  2BR7 A;  5HEU A;  4NZB A;  3ZDH A;  2BG9 C;  4XK9 A;  5J5G A;  3U8M A;  3PMZ A;  4HFD A;  4LML A;  4ZRU A;  5L47 A;  2W8F A;  4HFC A;  2Y54 A;  3LSV A;  2X00 D;  3C79 A;  5AFH A;  2BG9 E;  2BYS A;  2BYR A;  2XZ6 A;  5HEG A;  3TLV A;  3ZDG A;  5LG3 A;  4QAC A;  2Y57 A;  4HFE A;  3WTH A;  4IL9 A;  2XQ9 A;  3WTN A;  5CFB A;  3U8J A;  5SYO A;  2WNL A;  5KZU A;  4A97 A;  4ZJT A;  5J0Z A;  4UM3 S;  5J5F A;  2Y56 A;  5BW2 A;  3SH1 A;  5L4E A;  4COF A;  5AFL A;  3IGQ A;  3WTJ A;  4QH1 A;  4ZJS A;  3P4W A;  4HFI A;  5HEO A;  4TWF A;  3SQ6 A;  3U8L A;  4QH5 A;  2XYS A;  3ZKR A;  5TVC A;  3GUA A;  3WTO A;  5CO5 A;  4ALX A;  5AFM A;  2XZ5 A;  3JAE A;  4A98 A;  2BYQ A;  2YME A;  2BG9 B;  5HCM A;  3UUB A;  3RQU A;  3WTL A;  4BQT A;  3UQ4 A;  3WTI A;  5FJV A;  4TWH A;  2XQA A;  2WNJ A;  5HEH A;  2Y7Y A;  4ZK4 A;  2ZJU A;  4UY2 A;  4LMK A;  2UZ6 A;  4AFT A;  4ILC A;  4B5D A;  5AFK A;  3RIF A;  5HEJ A;  4ZR6 A;  1UX2 A;  5KE4 A;  5L4H A;  3TLU A;  3JAF A;  5J5I A;  4ZZC A;  2XQ5 A;  2WZY A;  4ILB A;  4UM3 A;  4AFG A;  3P50 A;  4TNW A;  4ZZB A;  2X00 A;  1UV6 A;  5AFN A;  2YOE A;  5AIN A;  5J5H A;  3SQ9 A;  4DBM A;  2YKS A;  3EHZ A;  2WN9 A;  4HFB A;  2PGZ A;  4IRE A;  3JAD A;  4BFQ A;  4AFH A;  4UM1 A;  2YN6 A;  4ILA A;  2XQ6 A;  2XQ8 A;  3WIP A;  3RQW A;  3RHW A;  4X5T A;  5HCJ A;  2XQ7 A;  5LXB A;  4Z90 A;  2XQ3 A;  4TWD A;  2BYP A;  3RI5 A;  2BJ0 A;  5IUX A;  2C9T A;  3EAM A;  3UQ7 A;  4HQP A;  2XYT A;  4WV9 A;  1UW6 A;  3TLT A;  3WTM A;  3SIO A;  4QH4 A;  2WNC A;  2ZJV A;  3T4M A;  2Y58 A;  2XNU A;  3UU6 A;  1I9B A;  5JME A;  4UXU A;  4UM3 P;  2BR8 A;  4NPP A;  5BP0 A;  3UU3 A;  4QAA A;  2YMD A;  2VL0 A;  4F8H A;  4LMJ A;  2BYN A;  3U8K A;  4FRR A;  4XHE A;  3UU4 A;  2BG9 A;  5AFJ A;  2XNV A;  5AFM B;  4ZK1 A;  4PIR A;  2XNT A;  2W8G A;  3EI0 A;  4QAB A;  3WTK A;  4Z91 A;  2PH9 A;  3TLW A;  4EZ1 A;  3TLS A;  2XQ4 A; 
#chains in the Genus database with same CATH topology
 4D01 A;  4TNV A;  4HFH A;  3U8N A;  3RIA A;  5BRX A;  3PEO A;  4IL4 A;  3UU5 A;  3UU8 A;  2QC1 B;  3C84 A;  2BR7 A;  5HEU A;  4NZB A;  3ZDH A;  2BG9 C;  4XK9 A;  5J5G A;  3U8M A;  3PMZ A;  4HFD A;  4LML A;  4ZRU A;  5L47 A;  2W8F A;  4HFC A;  2Y54 A;  3LSV A;  2X00 D;  3C79 A;  5AFH A;  2BG9 E;  2BYS A;  2BYR A;  2XZ6 A;  5HEG A;  3TLV A;  3ZDG A;  5LG3 A;  4QAC A;  2Y57 A;  4HFE A;  3WTH A;  4IL9 A;  2XQ9 A;  3WTN A;  5CFB A;  3U8J A;  5SYO A;  2WNL A;  5KZU A;  4A97 A;  4ZJT A;  5J0Z A;  4UM3 S;  5J5F A;  2Y56 A;  5BW2 A;  3SH1 A;  5L4E A;  4COF A;  5AFL A;  3IGQ A;  3WTJ A;  4QH1 A;  4ZJS A;  3P4W A;  4HFI A;  5HEO A;  4TWF A;  3SQ6 A;  3U8L A;  4QH5 A;  2XYS A;  3ZKR A;  5TVC A;  3GUA A;  3WTO A;  5CO5 A;  4ALX A;  5AFM A;  2XZ5 A;  3JAE A;  4A98 A;  2BYQ A;  2YME A;  2BG9 B;  5HCM A;  3UUB A;  3RQU A;  3WTL A;  4BQT A;  3UQ4 A;  3WTI A;  5FJV A;  4TWH A;  2XQA A;  2WNJ A;  5HEH A;  2Y7Y A;  4ZK4 A;  2ZJU A;  4UY2 A;  4LMK A;  2UZ6 A;  4AFT A;  4ILC A;  4B5D A;  5AFK A;  3RIF A;  5HEJ A;  4ZR6 A;  1UX2 A;  5KE4 A;  5L4H A;  3TLU A;  3JAF A;  5J5I A;  4ZZC A;  2XQ5 A;  2WZY A;  4ILB A;  4UM3 A;  4AFG A;  3P50 A;  4TNW A;  4ZZB A;  2X00 A;  1UV6 A;  5AFN A;  2YOE A;  5AIN A;  5J5H A;  3SQ9 A;  4DBM A;  2YKS A;  3EHZ A;  2WN9 A;  4HFB A;  2PGZ A;  4IRE A;  3JAD A;  4BFQ A;  4AFH A;  4UM1 A;  2YN6 A;  4ILA A;  2XQ6 A;  2XQ8 A;  3WIP A;  3RQW A;  3RHW A;  4X5T A;  5HCJ A;  2XQ7 A;  5LXB A;  4Z90 A;  2XQ3 A;  4TWD A;  2BYP A;  3RI5 A;  2BJ0 A;  5IUX A;  2C9T A;  3EAM A;  3UQ7 A;  4HQP A;  2XYT A;  4WV9 A;  1UW6 A;  3TLT A;  3WTM A;  3SIO A;  4QH4 A;  2WNC A;  2ZJV A;  3T4M A;  2Y58 A;  2XNU A;  3UU6 A;  1I9B A;  5JME A;  4UXU A;  4UM3 P;  2BR8 A;  4NPP A;  5BP0 A;  3UU3 A;  4QAA A;  2YMD A;  2VL0 A;  4F8H A;  4LMJ A;  2BYN A;  3U8K A;  4FRR A;  4XHE A;  3UU4 A;  2BG9 A;  5AFJ A;  2XNV A;  5AFM B;  4ZK1 A;  4PIR A;  2XNT A;  2W8G A;  3EI0 A;  4QAB A;  3WTK A;  4Z91 A;  2PH9 A;  3TLW A;  4EZ1 A;  3TLS A;  2XQ4 A; 
#chains in the Genus database with same CATH homology
 4D01 A;  4TNV A;  4HFH A;  3U8N A;  3RIA A;  5BRX A;  3PEO A;  4IL4 A;  3UU5 A;  3UU8 A;  2QC1 B;  3C84 A;  2BR7 A;  5HEU A;  4NZB A;  3ZDH A;  2BG9 C;  4XK9 A;  5J5G A;  3U8M A;  3PMZ A;  4HFD A;  4LML A;  4ZRU A;  5L47 A;  2W8F A;  4HFC A;  2Y54 A;  3LSV A;  2X00 D;  3C79 A;  5AFH A;  2BG9 E;  2BYS A;  2BYR A;  2XZ6 A;  5HEG A;  3TLV A;  3ZDG A;  5LG3 A;  4QAC A;  2Y57 A;  4HFE A;  3WTH A;  4IL9 A;  2XQ9 A;  3WTN A;  5CFB A;  3U8J A;  5SYO A;  2WNL A;  5KZU A;  4A97 A;  4ZJT A;  5J0Z A;  4UM3 S;  5J5F A;  2Y56 A;  5BW2 A;  3SH1 A;  5L4E A;  4COF A;  5AFL A;  3IGQ A;  3WTJ A;  4QH1 A;  4ZJS A;  3P4W A;  4HFI A;  5HEO A;  4TWF A;  3SQ6 A;  3U8L A;  4QH5 A;  2XYS A;  3ZKR A;  5TVC A;  3GUA A;  3WTO A;  5CO5 A;  4ALX A;  5AFM A;  2XZ5 A;  3JAE A;  4A98 A;  2BYQ A;  2YME A;  2BG9 B;  5HCM A;  3UUB A;  3RQU A;  3WTL A;  4BQT A;  3UQ4 A;  3WTI A;  5FJV A;  4TWH A;  2XQA A;  2WNJ A;  5HEH A;  2Y7Y A;  4ZK4 A;  2ZJU A;  4UY2 A;  4LMK A;  2UZ6 A;  4AFT A;  4ILC A;  4B5D A;  5AFK A;  3RIF A;  5HEJ A;  4ZR6 A;  1UX2 A;  5KE4 A;  5L4H A;  3TLU A;  3JAF A;  5J5I A;  4ZZC A;  2XQ5 A;  2WZY A;  4ILB A;  4UM3 A;  4AFG A;  3P50 A;  4TNW A;  4ZZB A;  2X00 A;  1UV6 A;  5AFN A;  2YOE A;  5AIN A;  5J5H A;  3SQ9 A;  4DBM A;  2YKS A;  3EHZ A;  2WN9 A;  4HFB A;  2PGZ A;  4IRE A;  3JAD A;  4BFQ A;  4AFH A;  4UM1 A;  2YN6 A;  4ILA A;  2XQ6 A;  2XQ8 A;  3WIP A;  3RQW A;  3RHW A;  4X5T A;  5HCJ A;  2XQ7 A;  5LXB A;  4Z90 A;  2XQ3 A;  4TWD A;  2BYP A;  3RI5 A;  2BJ0 A;  5IUX A;  2C9T A;  3EAM A;  3UQ7 A;  4HQP A;  2XYT A;  4WV9 A;  1UW6 A;  3TLT A;  3WTM A;  3SIO A;  4QH4 A;  2WNC A;  2ZJV A;  3T4M A;  2Y58 A;  2XNU A;  3UU6 A;  1I9B A;  5JME A;  4UXU A;  4UM3 P;  2BR8 A;  4NPP A;  5BP0 A;  3UU3 A;  4QAA A;  2YMD A;  2VL0 A;  4F8H A;  4LMJ A;  2BYN A;  3U8K A;  4FRR A;  4XHE A;  3UU4 A;  2BG9 A;  5AFJ A;  2XNV A;  5AFM B;  4ZK1 A;  4PIR A;  2XNT A;  2W8G A;  3EI0 A;  4QAB A;  3WTK A;  4Z91 A;  2PH9 A;  3TLW A;  4EZ1 A;  3TLS A;  2XQ4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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