2Y5YA

Crystal structure of lacy in complex with an affinity inactivator
Total Genus 121
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
121
sequence length
400
structure length
386
Chain Sequence
LKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFSFNAGCPAVEAFIEKVSRRSNFEFGRARMFGAVGWALVASIVGIMFTINNQFVFWLGSGMALILAVLLFFAKANHSAFSLKLALELFRQPKLWFLSLYVIGVSSTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGSFKYITSQFEVRFSATIYLVAFAFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords LACTOSE PERMEASE
publication title Crystal Structure of Lactose Permease in Complex with an Affinity Inactivator Yields Unique Insight Into Sugar Recognition.
pubmed doi rcsb
source organism Escherichia coli
total genus 121
structure length 386
sequence length 400
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-01-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01306 LacY_symp LacY proton/sugar symporter
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1250.20 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; MFS general substrate transporter like domains 2y5yA02
1.20.1250.20 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; MFS general substrate transporter like domains 2y5yA01
4GBYA 4U4TA 5D6KA 5EQHA 1PV6A 5C65A 4JREA 5A2NA 4J05A 4U4WA 4TPJA 4ZW9A 4IKWA 4JA3A 4APSA 2Y5YA 2V8NA 4D2DA 4YB9D 5GXBA 3WDOA 4QIQA 4IKVA 4GC0A 4ZWBA 2CFPA 4D2BA 4JR9A 4UVMA 4IKZA 4IKYA 4D2CA 4W6VA 1PW4A 4LDSA 4U4VA 4XNIA 5D58A 5D59A 2XUTA 4IKXA 1PV7A 4GBZA 4XNJA 4OH3A 5A2OA 4TPGA 2CFQA 3O7QA 4OAAA 3O7PA 4Q65A 4ZWCA 4ZYRA 4IU8A 4YBQA 4PYPA 4TPHA 5EQGA 4LEPA 5EQIA 4IU9A
chains in the Genus database with same CATH superfamily
2ILKA 4A3JD 4NEJA 1BBNA 1Z7CA 4BXXD 1KF9A 4DKFA 3LB6A 1ITFA 4DKCA 3HOZD 1ITIA 5D70A 4RS1A 4TPHA 2B8XA 5D28B 1HUWA 1PV6A 1EXZA 4JA3A 3QWRB 2V8NA 1PW4A 2KZ1A 1HZIA 4Z5RD 1M49A 2CFQA 1WCMD 1LQSL 1BP3A 3H0GD 4IU8A 4LEPA 1INRA 1AX8A 4NKQC 5IYBD 2Q7NB 4ZW9A 3UX9A 4A93D 2O6IA 3O7PA 1ALUA 1BGEA 2INTA 1HWGA 3L5XA 1Y1VD 3TGXB 5GXBA 3WDOA 3LB6B 4D2CA 3AYHA 1V7NV 4O6KA 3PIWA 2IL6A 3UEZE 4I77Z 3INKC 1Y1WD 5IP7D 3L5WI 1WU3I 5E4EA 1AU1A 2R92D 4PYPA 1Y6ML 2B91A 1BGCA 5FUCA 3SE3B 4GS7A 5A2NA 1CYLA 3HHCA 4YB9D 3H3VE 1HULA 4NI7A 4ZWBA 4BY7D 1ETEA 4A3MD 4GBZA 2B8UA 4OAAA 4YUEC 1CNT1 2B90A 4NN7A 2D48A 3G9VB 3DLQI 4DOHA 3VA2A 5C7XA 2JA7D 1RW5A 3HMXB 3BESL 2Y5YA 1BGDA 3PO3D 1V7MV 1CSGA 4IKVA 1RCBA 4BY1D 1N1FA 1M4BA 4BBRD 1HWHA 5A2OA 3DI3A 3D87A 1ITMA 5L6YC 4ZWCA 4YBQA 1D9CA 3NPZA 5C4XD 1BCNA 3S9DA 2D9QA 1IRLA 2XQBA 3HOWD 2GMFA 2CYKA 4NEMA 3NCEA 3UF5A 2XUTA 1PV7A 1P9MB 4NN6A 5FHXA 1QVNA 1RHGA 3DI2A 1HIJA 3HOUD 1GA3A 5LQBA 1IL6A 2CFPA 2JA6D 2R7ZD 4W6VA 3FKID 4U4VA 1A22A 4A3KD 1F45B 3I4ND 5EQIA 4A3GD 1EERA 1IARA 4J05A 2C35A 1YKBA 2O27A 4A3LD 1PW6A 4XNIA 1Y14A 1EVSA 2VUMD 4IKXA 4TPGA 3O7QA 4Q65A 4ZYRA 4LRLA 5EQHA 4YPGC 2ERJD 1ITLA 4NI9A 3NCFA 3BPNA 1F6FA 4IKYA 4A3BD 2B63D 3EJJA 5D58A 5D59A 4FA8E 1PVHB 3G6DA 5FLMD 3WCYI 4IU9A 2B8ZA 4U4TA 4A3ED 1SCFA 2HYMB 5D22A 2Z3QA 4JR9A 3NCCA 1HIKA 1VLKA 1Z92A 1IJZA 2B5IA 3IRHA 3B5KA 3D85C 5C3ED 4ZF7A 5D72A 4A3CD 4BBSD 3HHRA 4JREA 4TPJA 1BUYA 2PSMA 5C44D 1M48A 4NN5A 3HOVD 4QIQA 1RFBA 3D48P 3Q1SI 5KNHI 1NBPA 1I1RB 1LK3A 1J7VL 4WRLB 1PY2A 4OH3A 4J4LC 2O26A 1FYHA 3PIVA 4A3DD 5IYDD 3QAZA 5D6KA 1CN4C 1IK0A 1M4CA 2L3OA 4DKEA 3UF2A 4D2DA 4ZS7A 1ILKA 4GC0A 1D9GA 3OQ3A 1EKUA 4UVMA 3QB1A 1M4AA 4LDSA 1AXIA 2LAGA 2Q98A 2B8YA 3SE4B 4YDYI 5IYCD 3HOYD 5IP9D 3PO2D 2LMSA 1EMRA 1FG9A 1PGRA 4GBYA 3NCBA 2H24A 1M47A 3EW3A 4EXNA 4DKDA 2L3YA 1HGUA 2OQPA 4IKZA 4YQXA 4EXPA 1LKIA 3QB7A 4GRWA 4PS4A 3HOXD 3DUHC 5D71A 2R93D 2E9WC 5C65A 1CD9A 1GNCA 1B5LA 4U4WA 4IKWA 4APSA 2Z3RA 3QT2C 4X51A 3DGCL 2Q14A 4A3FD 1Y6KL 1Y6NL 1M4RA 4XNJA 3I4MD 3N0PA 5TS9A 4O9HA 3BPOA 4MHLA 5EQGA 1A7MA 3OG6A 2JA5D 3N06A 4D2BA 3MZGA 3BPLA 1JLIA 4A3ID 2JA8D 4CNIC 3OG4A
chains in the Genus database with same CATH topology
4GBYA 4U4TA 5D6KA 5EQHA 1PV6A 5C65A 4JREA 5A2NA 4J05A 4U4WA 4TPJA 4ZW9A 4IKWA 4JA3A 4APSA 2Y5YA 2V8NA 4D2DA 4YB9D 5GXBA 3WDOA 4QIQA 4IKVA 4GC0A 4ZWBA 2CFPA 4D2BA 4JR9A 4UVMA 4IKZA 4IKYA 4D2CA 4W6VA 1PW4A 4LDSA 4U4VA 4XNIA 5D58A 5D59A 2XUTA 4IKXA 1PV7A 4GBZA 4XNJA 4OH3A 5A2OA 4TPGA 2CFQA 3O7QA 4OAAA 3O7PA 4Q65A 4ZWCA 4ZYRA 4IU8A 4YBQA 4PYPA 4TPHA 5EQGA 4LEPA 5EQIA 4IU9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GBY A;  4U4T A;  5D6K A;  5EQH A;  1PV6 A;  5C65 A;  4JRE A;  5A2N A;  4J05 A;  4U4W A;  4TPJ A;  4ZW9 A;  4IKW A;  4JA3 A;  4APS A;  2Y5Y A;  2V8N A;  4D2D A;  4YB9 D;  5GXB A;  3WDO A;  4QIQ A;  4IKV A;  4GC0 A;  4ZWB A;  2CFP A;  4D2B A;  4JR9 A;  4UVM A;  4IKZ A;  4IKY A;  4D2C A;  4W6V A;  1PW4 A;  4LDS A;  4U4V A;  4XNI A;  5D58 A;  5D59 A;  2XUT A;  4IKX A;  1PV7 A;  4GBZ A;  4XNJ A;  4OH3 A;  5A2O A;  4TPG A;  2CFQ A;  3O7Q A;  4OAA A;  3O7P A;  4Q65 A;  4ZWC A;  4ZYR A;  4IU8 A;  4YBQ A;  4PYP A;  4TPH A;  5EQG A;  4LEP A;  5EQI A;  4IU9 A; 
#chains in the Genus database with same CATH topology
 2ILK A;  4A3J D;  4NEJ A;  1BBN A;  1Z7C A;  4BXX D;  1KF9 A;  4DKF A;  3LB6 A;  1ITF A;  4DKC A;  3HOZ D;  1ITI A;  5D70 A;  4RS1 A;  4TPH A;  2B8X A;  5D28 B;  1HUW A;  1PV6 A;  1EXZ A;  4JA3 A;  3QWR B;  2V8N A;  1PW4 A;  2KZ1 A;  1HZI A;  4Z5R D;  1M49 A;  2CFQ A;  1WCM D;  1LQS L;  1BP3 A;  3H0G D;  4IU8 A;  4LEP A;  1INR A;  1AX8 A;  4NKQ C;  5IYB D;  2Q7N B;  4ZW9 A;  3UX9 A;  4A93 D;  2O6I A;  3O7P A;  1ALU A;  1BGE A;  2INT A;  1HWG A;  3L5X A;  1Y1V D;  3TGX B;  5GXB A;  3WDO A;  3LB6 B;  4D2C A;  3AYH A;  1V7N V;  4O6K A;  3PIW A;  2IL6 A;  3UEZ E;  4I77 Z;  3INK C;  1Y1W D;  5IP7 D;  3L5W I;  1WU3 I;  5E4E A;  1AU1 A;  2R92 D;  4PYP A;  1Y6M L;  2B91 A;  1BGC A;  5FUC A;  3SE3 B;  4GS7 A;  5A2N A;  1CYL A;  3HHC A;  4YB9 D;  3H3V E;  1HUL A;  4NI7 A;  4ZWB A;  4BY7 D;  1ETE A;  4A3M D;  4GBZ A;  2B8U A;  4OAA A;  4YUE C;  1CNT 1;  2B90 A;  4NN7 A;  2D48 A;  3G9V B;  3DLQ I;  4DOH A;  3VA2 A;  5C7X A;  2JA7 D;  1RW5 A;  3HMX B;  3BES L;  2Y5Y A;  1BGD A;  3PO3 D;  1V7M V;  1CSG A;  4IKV A;  1RCB A;  4BY1 D;  1N1F A;  1M4B A;  4BBR D;  1HWH A;  5A2O A;  3DI3 A;  3D87 A;  1ITM A;  5L6Y C;  4ZWC A;  4YBQ A;  1D9C A;  3NPZ A;  5C4X D;  1BCN A;  3S9D A;  2D9Q A;  1IRL A;  2XQB A;  3HOW D;  2GMF A;  2CYK A;  4NEM A;  3NCE A;  3UF5 A;  2XUT A;  1PV7 A;  1P9M B;  4NN6 A;  5FHX A;  1QVN A;  1RHG A;  3DI2 A;  1HIJ A;  3HOU D;  1GA3 A;  5LQB A;  1IL6 A;  2CFP A;  2JA6 D;  2R7Z D;  4W6V A;  3FKI D;  4U4V A;  1A22 A;  4A3K D;  1F45 B;  3I4N D;  5EQI A;  4A3G D;  1EER A;  1IAR A;  4J05 A;  2C35 A;  1YKB A;  2O27 A;  4A3L D;  1PW6 A;  4XNI A;  1Y14 A;  1EVS A;  2VUM D;  4IKX A;  4TPG A;  3O7Q A;  4Q65 A;  4ZYR A;  4LRL A;  5EQH A;  4YPG C;  2ERJ D;  1ITL A;  4NI9 A;  3NCF A;  3BPN A;  1F6F A;  4IKY A;  4A3B D;  2B63 D;  3EJJ A;  5D58 A;  5D59 A;  4FA8 E;  1PVH B;  3G6D A;  5FLM D;  3WCY I;  4IU9 A;  2B8Z A;  4U4T A;  4A3E D;  1SCF A;  2HYM B;  5D22 A;  2Z3Q A;  4JR9 A;  3NCC A;  1HIK A;  1VLK A;  1Z92 A;  1IJZ A;  2B5I A;  3IRH A;  3B5K A;  3D85 C;  5C3E D;  4ZF7 A;  5D72 A;  4A3C D;  4BBS D;  3HHR A;  4JRE A;  4TPJ A;  1BUY A;  2PSM A;  5C44 D;  1M48 A;  4NN5 A;  3HOV D;  4QIQ A;  1RFB A;  3D48 P;  3Q1S I;  5KNH I;  1NBP A;  1I1R B;  1LK3 A;  1J7V L;  4WRL B;  1PY2 A;  4OH3 A;  4J4L C;  2O26 A;  1FYH A;  3PIV A;  4A3D D;  5IYD D;  3QAZ A;  5D6K A;  1CN4 C;  1IK0 A;  1M4C A;  2L3O A;  4DKE A;  3UF2 A;  4D2D A;  4ZS7 A;  1ILK A;  4GC0 A;  1D9G A;  3OQ3 A;  1EKU A;  4UVM A;  3QB1 A;  1M4A A;  4LDS A;  1AXI A;  2LAG A;  2Q98 A;  2B8Y A;  3SE4 B;  4YDY I;  5IYC D;  3HOY D;  5IP9 D;  3PO2 D;  2LMS A;  1EMR A;  1FG9 A;  1PGR A;  4GBY A;  3NCB A;  2H24 A;  1M47 A;  3EW3 A;  4EXN A;  4DKD A;  2L3Y A;  1HGU A;  2OQP A;  4IKZ A;  4YQX A;  4EXP A;  1LKI A;  3QB7 A;  4GRW A;  4PS4 A;  3HOX D;  3DUH C;  5D71 A;  2R93 D;  2E9W C;  5C65 A;  1CD9 A;  1GNC A;  1B5L A;  4U4W A;  4IKW A;  4APS A;  2Z3R A;  3QT2 C;  4X51 A;  3DGC L;  2Q14 A;  4A3F D;  1Y6K L;  1Y6N L;  1M4R A;  4XNJ A;  3I4M D;  3N0P A;  5TS9 A;  4O9H A;  3BPO A;  4MHL A;  5EQG A;  1A7M A;  3OG6 A;  2JA5 D;  3N06 A;  4D2B A;  3MZG A;  3BPL A;  1JLI A;  4A3I D;  2JA8 D;  4CNI C;  3OG4 A; 
#chains in the Genus database with same CATH homology
 4GBY A;  4U4T A;  5D6K A;  5EQH A;  1PV6 A;  5C65 A;  4JRE A;  5A2N A;  4J05 A;  4U4W A;  4TPJ A;  4ZW9 A;  4IKW A;  4JA3 A;  4APS A;  2Y5Y A;  2V8N A;  4D2D A;  4YB9 D;  5GXB A;  3WDO A;  4QIQ A;  4IKV A;  4GC0 A;  4ZWB A;  2CFP A;  4D2B A;  4JR9 A;  4UVM A;  4IKZ A;  4IKY A;  4D2C A;  4W6V A;  1PW4 A;  4LDS A;  4U4V A;  4XNI A;  5D58 A;  5D59 A;  2XUT A;  4IKX A;  1PV7 A;  4GBZ A;  4XNJ A;  4OH3 A;  5A2O A;  4TPG A;  2CFQ A;  3O7Q A;  4OAA A;  3O7P A;  4Q65 A;  4ZWC A;  4ZYR A;  4IU8 A;  4YBQ A;  4PYP A;  4TPH A;  5EQG A;  4LEP A;  5EQI A;  4IU9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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