2Y7YA

Aplysia californica achbp in apo state
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
205
structure length
203
Chain Sequence
QANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKVDSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGVTCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSPEPYIDVNLVVKFRER
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Receptor
source organism Aplysia californica
publication title Use of Acetylcholine Binding Protein in the Search for Novel Alpha7 Nicotinic Receptor Ligands. In Silico Docking, Pharmacological Screening, and X-Ray Analysis.
pubmed doi rcsb
molecule keywords SOLUBLE ACETYLCHOLINE RECEPTOR
total genus 50
structure length 203
sequence length 205
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2011-02-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 2y7yA00
3SIOA 2XNTA 2BYQA 3TLSA 3JAEA 5JMEA 5LXBA 2PH9A 4HFDA 4HQPA 3P50A 3WTLA 3SQ9A 3PEOA 4ZK4A 3T4MA 4NZBA 5LG3A 2Y56A 3WTIA 3RQUA 4UXUA 5AINA 3RIFA 3UU8A 4UM3P 5KE4A 2BG9A 3EAMA 4FRRA 3WTKA 4D01A 2VL0A 4DBMA 2XQ3A 4UM3A 4ZZBA 2WZYA 4LMLA 2W8FA 2XZ5A 4TNVA 5HCJA 3WTNA 5KZUA 2XNUA 4ZJSA 4HFIA 3SQ6A 3U8MA 2BR8A 3GUAA 3TLWA 3RHWA 4AFHA 5HEGA 4HFBA 1UX2A 3ZDHA 5AFKA 4ZR6A 3P4WA 5HEHA 5CO5A 4AFGA 2YMEA 4HFEA 4NPPA 3UU5A 2PGZA 3WTHA 2XZ6A 5J5IA 3WTMA 2BG9E 4ILCA 4PIRA 3RQWA 4ZJTA 5L47A 5CFBA 5L4EA 3UU6A 4A97A 3WTOA 4HFCA 5AFNA 1UW6A 4COFA 3C79A 5HCMA 3C84A 5L4HA 3RI5A 2C9TA 2BYPA 4F8HA 5AFMA 4XHEA 4ALXA 4ZK1A 2X00A 4TNWA 4A98A 2XQAA 2Y57A 5J5FA 4QH5A 4ZRUA 3WIPA 4IREA 3JADA 1I9BA 2YKSA 3U8JA 4UM3S 4TWDA 2ZJVA 4X5TA 2XQ9A 4AFTA 3TLUA 4BQTA 2XQ4A 2YOEA 4IL4A 2BG9C 5AFHA 4BFQA 4Z90A 4XK9A 2Y58A 4QH1A 5J5HA 3LSVA 3RIAA 5TVCA 2BJ0A 3TLTA 4TWFA 3UQ7A 5HEJA 2XQ7A 3JAFA 2ZJUA 3EI0A 2WNLA 5IUXA 2BG9B 2WNCA 2XQ6A 2BYSA 4QACA 3UU3A 4ZZCA 4WV9A 5BW2A 2XQ8A 3UUBA 3IGQA 5HEOA 5J0ZA 2WNJA 4ILAA 4LMKA 2BYNA 2XQ5A 2W8GA 2Y7YA 4TWHA 2XYSA 5SYOA 3TLVA 4UM1A 4QAAA 3U8LA 4UY2A 2XNVA 3ZKRA 3WTJA 4EZ1A 3ZDGA 2XYTA 3EHZA 2BR7A 4Z91A 2UZ6A 3U8KA 4QABA 4HFHA 4LMJA 4B5DA 5FJVA 3UU4A 5AFMB 2WN9A 5AFLA 5BP0A 4QH4A 5BRXA 2YN6A 1UV6A 5AFJA 2X00D 2YMDA 4ILBA 3SH1A 3UQ4A 2QC1B 4IL9A 3U8NA 3PMZA 5HEUA 2BYRA 5J5GA 2Y54A
chains in the Genus database with same CATH superfamily
3SIOA 2XNTA 2BYQA 3TLSA 3JAEA 5JMEA 5LXBA 2PH9A 4HFDA 4HQPA 3P50A 3WTLA 3SQ9A 3PEOA 4ZK4A 3T4MA 4NZBA 5LG3A 2Y56A 3WTIA 3RQUA 4UXUA 5AINA 3RIFA 3UU8A 4UM3P 5KE4A 2BG9A 3EAMA 4FRRA 3WTKA 4D01A 2VL0A 4DBMA 2XQ3A 4UM3A 4ZZBA 2WZYA 4LMLA 2W8FA 2XZ5A 4TNVA 5HCJA 3WTNA 5KZUA 2XNUA 4ZJSA 4HFIA 3SQ6A 3U8MA 2BR8A 3GUAA 3TLWA 3RHWA 4AFHA 5HEGA 4HFBA 1UX2A 3ZDHA 5AFKA 4ZR6A 3P4WA 5HEHA 5CO5A 4AFGA 2YMEA 4HFEA 4NPPA 3UU5A 2PGZA 3WTHA 2XZ6A 5J5IA 3WTMA 2BG9E 4ILCA 4PIRA 3RQWA 4ZJTA 5L47A 5CFBA 5L4EA 3UU6A 4A97A 3WTOA 4HFCA 5AFNA 1UW6A 4COFA 3C79A 5HCMA 3C84A 5L4HA 3RI5A 2C9TA 2BYPA 4F8HA 5AFMA 4XHEA 4ALXA 4ZK1A 2X00A 4TNWA 4A98A 2XQAA 2Y57A 5J5FA 4QH5A 4ZRUA 3WIPA 4IREA 3JADA 1I9BA 2YKSA 3U8JA 4UM3S 4TWDA 2ZJVA 4X5TA 2XQ9A 4AFTA 3TLUA 4BQTA 2XQ4A 2YOEA 4IL4A 2BG9C 5AFHA 4BFQA 4Z90A 4XK9A 2Y58A 4QH1A 5J5HA 3LSVA 3RIAA 5TVCA 2BJ0A 3TLTA 4TWFA 3UQ7A 5HEJA 2XQ7A 3JAFA 2ZJUA 3EI0A 2WNLA 5IUXA 2BG9B 2WNCA 2XQ6A 2BYSA 4QACA 3UU3A 4ZZCA 4WV9A 5BW2A 2XQ8A 3UUBA 3IGQA 5HEOA 5J0ZA 2WNJA 4ILAA 4LMKA 2BYNA 2XQ5A 2W8GA 2Y7YA 4TWHA 2XYSA 5SYOA 3TLVA 4UM1A 4QAAA 3U8LA 4UY2A 2XNVA 3ZKRA 3WTJA 4EZ1A 3ZDGA 2XYTA 3EHZA 2BR7A 4Z91A 2UZ6A 3U8KA 4QABA 4HFHA 4LMJA 4B5DA 5FJVA 3UU4A 5AFMB 2WN9A 5AFLA 5BP0A 4QH4A 5BRXA 2YN6A 1UV6A 5AFJA 2X00D 2YMDA 4ILBA 3SH1A 3UQ4A 2QC1B 4IL9A 3U8NA 3PMZA 5HEUA 2BYRA 5J5GA 2Y54A
chains in the Genus database with same CATH topology
3SIOA 2XNTA 2BYQA 3TLSA 3JAEA 5JMEA 5LXBA 2PH9A 4HFDA 4HQPA 3P50A 3WTLA 3SQ9A 3PEOA 4ZK4A 3T4MA 4NZBA 5LG3A 2Y56A 3WTIA 3RQUA 4UXUA 5AINA 3RIFA 3UU8A 4UM3P 5KE4A 2BG9A 3EAMA 4FRRA 3WTKA 4D01A 2VL0A 4DBMA 2XQ3A 4UM3A 4ZZBA 2WZYA 4LMLA 2W8FA 2XZ5A 4TNVA 5HCJA 3WTNA 5KZUA 2XNUA 4ZJSA 4HFIA 3SQ6A 3U8MA 2BR8A 3GUAA 3TLWA 3RHWA 4AFHA 5HEGA 4HFBA 1UX2A 3ZDHA 5AFKA 4ZR6A 3P4WA 5HEHA 5CO5A 4AFGA 2YMEA 4HFEA 4NPPA 3UU5A 2PGZA 3WTHA 2XZ6A 5J5IA 3WTMA 2BG9E 4ILCA 4PIRA 3RQWA 4ZJTA 5L47A 5CFBA 5L4EA 3UU6A 4A97A 3WTOA 4HFCA 5AFNA 1UW6A 4COFA 3C79A 5HCMA 3C84A 5L4HA 3RI5A 2C9TA 2BYPA 4F8HA 5AFMA 4XHEA 4ALXA 4ZK1A 2X00A 4TNWA 4A98A 2XQAA 2Y57A 5J5FA 4QH5A 4ZRUA 3WIPA 4IREA 3JADA 1I9BA 2YKSA 3U8JA 4UM3S 4TWDA 2ZJVA 4X5TA 2XQ9A 4AFTA 3TLUA 4BQTA 2XQ4A 2YOEA 4IL4A 2BG9C 5AFHA 4BFQA 4Z90A 4XK9A 2Y58A 4QH1A 5J5HA 3LSVA 3RIAA 5TVCA 2BJ0A 3TLTA 4TWFA 3UQ7A 5HEJA 2XQ7A 3JAFA 2ZJUA 3EI0A 2WNLA 5IUXA 2BG9B 2WNCA 2XQ6A 2BYSA 4QACA 3UU3A 4ZZCA 4WV9A 5BW2A 2XQ8A 3UUBA 3IGQA 5HEOA 5J0ZA 2WNJA 4ILAA 4LMKA 2BYNA 2XQ5A 2W8GA 2Y7YA 4TWHA 2XYSA 5SYOA 3TLVA 4UM1A 4QAAA 3U8LA 4UY2A 2XNVA 3ZKRA 3WTJA 4EZ1A 3ZDGA 2XYTA 3EHZA 2BR7A 4Z91A 2UZ6A 3U8KA 4QABA 4HFHA 4LMJA 4B5DA 5FJVA 3UU4A 5AFMB 2WN9A 5AFLA 5BP0A 4QH4A 5BRXA 2YN6A 1UV6A 5AFJA 2X00D 2YMDA 4ILBA 3SH1A 3UQ4A 2QC1B 4IL9A 3U8NA 3PMZA 5HEUA 2BYRA 5J5GA 2Y54A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SIO A;  2XNT A;  2BYQ A;  3TLS A;  3JAE A;  5JME A;  5LXB A;  2PH9 A;  4HFD A;  4HQP A;  3P50 A;  3WTL A;  3SQ9 A;  3PEO A;  4ZK4 A;  3T4M A;  4NZB A;  5LG3 A;  2Y56 A;  3WTI A;  3RQU A;  4UXU A;  5AIN A;  3RIF A;  3UU8 A;  4UM3 P;  5KE4 A;  2BG9 A;  3EAM A;  4FRR A;  3WTK A;  4D01 A;  2VL0 A;  4DBM A;  2XQ3 A;  4UM3 A;  4ZZB A;  2WZY A;  4LML A;  2W8F A;  2XZ5 A;  4TNV A;  5HCJ A;  3WTN A;  5KZU A;  2XNU A;  4ZJS A;  4HFI A;  3SQ6 A;  3U8M A;  2BR8 A;  3GUA A;  3TLW A;  3RHW A;  4AFH A;  5HEG A;  4HFB A;  1UX2 A;  3ZDH A;  5AFK A;  4ZR6 A;  3P4W A;  5HEH A;  5CO5 A;  4AFG A;  2YME A;  4HFE A;  4NPP A;  3UU5 A;  2PGZ A;  3WTH A;  2XZ6 A;  5J5I A;  3WTM A;  2BG9 E;  4ILC A;  4PIR A;  3RQW A;  4ZJT A;  5L47 A;  5CFB A;  5L4E A;  3UU6 A;  4A97 A;  3WTO A;  4HFC A;  5AFN A;  1UW6 A;  4COF A;  3C79 A;  5HCM A;  3C84 A;  5L4H A;  3RI5 A;  2C9T A;  2BYP A;  4F8H A;  5AFM A;  4XHE A;  4ALX A;  4ZK1 A;  2X00 A;  4TNW A;  4A98 A;  2XQA A;  2Y57 A;  5J5F A;  4QH5 A;  4ZRU A;  3WIP A;  4IRE A;  3JAD A;  1I9B A;  2YKS A;  3U8J A;  4UM3 S;  4TWD A;  2ZJV A;  4X5T A;  2XQ9 A;  4AFT A;  3TLU A;  4BQT A;  2XQ4 A;  2YOE A;  4IL4 A;  2BG9 C;  5AFH A;  4BFQ A;  4Z90 A;  4XK9 A;  2Y58 A;  4QH1 A;  5J5H A;  3LSV A;  3RIA A;  5TVC A;  2BJ0 A;  3TLT A;  4TWF A;  3UQ7 A;  5HEJ A;  2XQ7 A;  3JAF A;  2ZJU A;  3EI0 A;  2WNL A;  5IUX A;  2BG9 B;  2WNC A;  2XQ6 A;  2BYS A;  4QAC A;  3UU3 A;  4ZZC A;  4WV9 A;  5BW2 A;  2XQ8 A;  3UUB A;  3IGQ A;  5HEO A;  5J0Z A;  2WNJ A;  4ILA A;  4LMK A;  2BYN A;  2XQ5 A;  2W8G A;  2Y7Y A;  4TWH A;  2XYS A;  5SYO A;  3TLV A;  4UM1 A;  4QAA A;  3U8L A;  4UY2 A;  2XNV A;  3ZKR A;  3WTJ A;  4EZ1 A;  3ZDG A;  2XYT A;  3EHZ A;  2BR7 A;  4Z91 A;  2UZ6 A;  3U8K A;  4QAB A;  4HFH A;  4LMJ A;  4B5D A;  5FJV A;  3UU4 A;  5AFM B;  2WN9 A;  5AFL A;  5BP0 A;  4QH4 A;  5BRX A;  2YN6 A;  1UV6 A;  5AFJ A;  2X00 D;  2YMD A;  4ILB A;  3SH1 A;  3UQ4 A;  2QC1 B;  4IL9 A;  3U8N A;  3PMZ A;  5HEU A;  2BYR A;  5J5G A;  2Y54 A; 
#chains in the Genus database with same CATH topology
 3SIO A;  2XNT A;  2BYQ A;  3TLS A;  3JAE A;  5JME A;  5LXB A;  2PH9 A;  4HFD A;  4HQP A;  3P50 A;  3WTL A;  3SQ9 A;  3PEO A;  4ZK4 A;  3T4M A;  4NZB A;  5LG3 A;  2Y56 A;  3WTI A;  3RQU A;  4UXU A;  5AIN A;  3RIF A;  3UU8 A;  4UM3 P;  5KE4 A;  2BG9 A;  3EAM A;  4FRR A;  3WTK A;  4D01 A;  2VL0 A;  4DBM A;  2XQ3 A;  4UM3 A;  4ZZB A;  2WZY A;  4LML A;  2W8F A;  2XZ5 A;  4TNV A;  5HCJ A;  3WTN A;  5KZU A;  2XNU A;  4ZJS A;  4HFI A;  3SQ6 A;  3U8M A;  2BR8 A;  3GUA A;  3TLW A;  3RHW A;  4AFH A;  5HEG A;  4HFB A;  1UX2 A;  3ZDH A;  5AFK A;  4ZR6 A;  3P4W A;  5HEH A;  5CO5 A;  4AFG A;  2YME A;  4HFE A;  4NPP A;  3UU5 A;  2PGZ A;  3WTH A;  2XZ6 A;  5J5I A;  3WTM A;  2BG9 E;  4ILC A;  4PIR A;  3RQW A;  4ZJT A;  5L47 A;  5CFB A;  5L4E A;  3UU6 A;  4A97 A;  3WTO A;  4HFC A;  5AFN A;  1UW6 A;  4COF A;  3C79 A;  5HCM A;  3C84 A;  5L4H A;  3RI5 A;  2C9T A;  2BYP A;  4F8H A;  5AFM A;  4XHE A;  4ALX A;  4ZK1 A;  2X00 A;  4TNW A;  4A98 A;  2XQA A;  2Y57 A;  5J5F A;  4QH5 A;  4ZRU A;  3WIP A;  4IRE A;  3JAD A;  1I9B A;  2YKS A;  3U8J A;  4UM3 S;  4TWD A;  2ZJV A;  4X5T A;  2XQ9 A;  4AFT A;  3TLU A;  4BQT A;  2XQ4 A;  2YOE A;  4IL4 A;  2BG9 C;  5AFH A;  4BFQ A;  4Z90 A;  4XK9 A;  2Y58 A;  4QH1 A;  5J5H A;  3LSV A;  3RIA A;  5TVC A;  2BJ0 A;  3TLT A;  4TWF A;  3UQ7 A;  5HEJ A;  2XQ7 A;  3JAF A;  2ZJU A;  3EI0 A;  2WNL A;  5IUX A;  2BG9 B;  2WNC A;  2XQ6 A;  2BYS A;  4QAC A;  3UU3 A;  4ZZC A;  4WV9 A;  5BW2 A;  2XQ8 A;  3UUB A;  3IGQ A;  5HEO A;  5J0Z A;  2WNJ A;  4ILA A;  4LMK A;  2BYN A;  2XQ5 A;  2W8G A;  2Y7Y A;  4TWH A;  2XYS A;  5SYO A;  3TLV A;  4UM1 A;  4QAA A;  3U8L A;  4UY2 A;  2XNV A;  3ZKR A;  3WTJ A;  4EZ1 A;  3ZDG A;  2XYT A;  3EHZ A;  2BR7 A;  4Z91 A;  2UZ6 A;  3U8K A;  4QAB A;  4HFH A;  4LMJ A;  4B5D A;  5FJV A;  3UU4 A;  5AFM B;  2WN9 A;  5AFL A;  5BP0 A;  4QH4 A;  5BRX A;  2YN6 A;  1UV6 A;  5AFJ A;  2X00 D;  2YMD A;  4ILB A;  3SH1 A;  3UQ4 A;  2QC1 B;  4IL9 A;  3U8N A;  3PMZ A;  5HEU A;  2BYR A;  5J5G A;  2Y54 A; 
#chains in the Genus database with same CATH homology
 3SIO A;  2XNT A;  2BYQ A;  3TLS A;  3JAE A;  5JME A;  5LXB A;  2PH9 A;  4HFD A;  4HQP A;  3P50 A;  3WTL A;  3SQ9 A;  3PEO A;  4ZK4 A;  3T4M A;  4NZB A;  5LG3 A;  2Y56 A;  3WTI A;  3RQU A;  4UXU A;  5AIN A;  3RIF A;  3UU8 A;  4UM3 P;  5KE4 A;  2BG9 A;  3EAM A;  4FRR A;  3WTK A;  4D01 A;  2VL0 A;  4DBM A;  2XQ3 A;  4UM3 A;  4ZZB A;  2WZY A;  4LML A;  2W8F A;  2XZ5 A;  4TNV A;  5HCJ A;  3WTN A;  5KZU A;  2XNU A;  4ZJS A;  4HFI A;  3SQ6 A;  3U8M A;  2BR8 A;  3GUA A;  3TLW A;  3RHW A;  4AFH A;  5HEG A;  4HFB A;  1UX2 A;  3ZDH A;  5AFK A;  4ZR6 A;  3P4W A;  5HEH A;  5CO5 A;  4AFG A;  2YME A;  4HFE A;  4NPP A;  3UU5 A;  2PGZ A;  3WTH A;  2XZ6 A;  5J5I A;  3WTM A;  2BG9 E;  4ILC A;  4PIR A;  3RQW A;  4ZJT A;  5L47 A;  5CFB A;  5L4E A;  3UU6 A;  4A97 A;  3WTO A;  4HFC A;  5AFN A;  1UW6 A;  4COF A;  3C79 A;  5HCM A;  3C84 A;  5L4H A;  3RI5 A;  2C9T A;  2BYP A;  4F8H A;  5AFM A;  4XHE A;  4ALX A;  4ZK1 A;  2X00 A;  4TNW A;  4A98 A;  2XQA A;  2Y57 A;  5J5F A;  4QH5 A;  4ZRU A;  3WIP A;  4IRE A;  3JAD A;  1I9B A;  2YKS A;  3U8J A;  4UM3 S;  4TWD A;  2ZJV A;  4X5T A;  2XQ9 A;  4AFT A;  3TLU A;  4BQT A;  2XQ4 A;  2YOE A;  4IL4 A;  2BG9 C;  5AFH A;  4BFQ A;  4Z90 A;  4XK9 A;  2Y58 A;  4QH1 A;  5J5H A;  3LSV A;  3RIA A;  5TVC A;  2BJ0 A;  3TLT A;  4TWF A;  3UQ7 A;  5HEJ A;  2XQ7 A;  3JAF A;  2ZJU A;  3EI0 A;  2WNL A;  5IUX A;  2BG9 B;  2WNC A;  2XQ6 A;  2BYS A;  4QAC A;  3UU3 A;  4ZZC A;  4WV9 A;  5BW2 A;  2XQ8 A;  3UUB A;  3IGQ A;  5HEO A;  5J0Z A;  2WNJ A;  4ILA A;  4LMK A;  2BYN A;  2XQ5 A;  2W8G A;  2Y7Y A;  4TWH A;  2XYS A;  5SYO A;  3TLV A;  4UM1 A;  4QAA A;  3U8L A;  4UY2 A;  2XNV A;  3ZKR A;  3WTJ A;  4EZ1 A;  3ZDG A;  2XYT A;  3EHZ A;  2BR7 A;  4Z91 A;  2UZ6 A;  3U8K A;  4QAB A;  4HFH A;  4LMJ A;  4B5D A;  5FJV A;  3UU4 A;  5AFM B;  2WN9 A;  5AFL A;  5BP0 A;  4QH4 A;  5BRX A;  2YN6 A;  1UV6 A;  5AFJ A;  2X00 D;  2YMD A;  4ILB A;  3SH1 A;  3UQ4 A;  2QC1 B;  4IL9 A;  3U8N A;  3PMZ A;  5HEU A;  2BYR A;  5J5G A;  2Y54 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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