2Y8TA

Co-structure of ama1 with a surface exposed region of ron2 from toxoplasma gondii
Total Genus 98
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
98
sequence length
412
structure length
388
Chain Sequence
SGNPFQANVEMKTFMERFNLTHHHQSGIYVDLGQDKEVDGTLYREPAGLCPIWGKHIELQQPDRPPYRNNFLEDVPTEKEYKQSGNPLPGGFNLNFVTPSGQRISPFPMELLEKNSNIKASTDLGRCAEFAFKTVAMDKNNKATKYRYPFVYDSKKRLCHILYVSMQLMEGKKYCSVKGEPPDLTWYCFKPRKSVTENHHLIYGSAYVGENPDAFISKCPNQALRGYRFGVWKKGRCLDYTELTDTVIERVESKAQCWVKTFENDGVASDQPDQPHSGGVGRNYGFYYVDTTGEGKCALSDQVPDCLVSDSAAVSYTAAGSLSEETPNFIIPSNPPTPETALQCTADKFPDSFGACDVQACKRQKTSCVGGQIQSTSVDCTADEQNEC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
molecule keywords APICAL MEMBRANE ANTIGEN, PUTATIVE
publication title Host Cell Invasion by Apicomplexan Parasites: Insights from the Co-Structure of Ama1 with a Ron2 Peptide
pubmed doi rcsb
source organism Toxoplasma gondii
total genus 98
structure length 388
sequence length 412
chains with identical sequence D
ec nomenclature
pdb deposition date 2011-02-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02430 AMA-1 Apical membrane antigen 1
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.70.70 Mainly Beta Ribbon Complement Module; domain 1 Complement Module; domain 1 2y8tA03
3ZLEA 3ZLDA 2Y8TA 2X2ZA 4APLA 2Y8SA 2Y8RA 4YIZA
chains in the Genus database with same CATH superfamily
2LOJA 1RLHA 4C16A 3FGRA 4DJZA 2YBYA 2RLPA 2QY0A 4AYDA 3IU3I 3ZD2A 4B2RA 1H2QP 1GKNA 2YRAA 5DN5A 1Q3XA 2JGXA 3O8EB 5HYPA 1TPMA 2MCZA 3TVJA 1E88A 3FGTA 4KKDA 1FBRA 1O9AA 5JPMG 5HYUB 1HCCA 2EC3A 4K12A 2BZMA 2O39C 2XWJI 2XRDA 1HFIA 2EHFA 3NFPI 2RL0A 3IX0A 2IZ4A 3KXVA 2XRBA 1OJVA 2KMSA 4WJG2 1ZJKA 2Y8TA 1ELVA 1PPQA 1MD7A 3T5OA 2IZ3A 1MD8A 2V8EA 1SS2A 1C1ZA 1VVCA 4B2SA 3R62A 3GOVA 1HFHA 4YNXA 2W81A 2WIIC 1OK1A 3OXUD 3ZRZA 1SRZA 1H2PP 2W80A 4MUCA 3K3TA 4AYEA 1TPNA 3CALA 5HZPB 2CG7A 1GKGA 3OEDC 3L89M 3M7PA 3OP8A 5DN4A 2G7IA 3NJAA 1H03P 2XWBF 4MSLA 1OJWA 4PO7A 2B5ID 1Z92B 2JGWA 4YIZA 4AYIA 1H04P 1E8BA 3GXEA 1G4FA 4FXGG 3KZJA 2KRIA 3F6KA 3ZD1A 3EJHA 2ZYCA 1GPZA 4APLA 2XQWC 4CSYA 2Y8SA 4IGDA 4BWCA 4ONTD 1QO6A 3WSXA 1E5GA 3SW0X 4J38B 1NWVA 2RKZA 2UWNA 1TPGA 5FO8C 1LY2A 1G4GA 3INBC 2RKYA 1OK9A 1QUBA 1U5MA 2A55A 3WSYA 2JRAA 2MCYA 5HYTB 4F4OC 2X2ZA 2CKUA 1VVDA 4JHSA 4LOSA 1QGBA 3ZLEA 3ERBA 3CI0J 2ERJA 2RLQA 3MQLA 4A5WB 3VWOA 1CKLA 1OK3A 2I2LA 4PZ5A 4AYMA 1UOTP 5I0QB 3ZLDA 1OK2A 4LOTA 1OJYA 4N7EA 4ZH1D 3RJ3D 2CG6A 2Y8RA 1GHQB
chains in the Genus database with same CATH topology
3NJAA 3FGRA 4MSLA 4PO7A 3WSYA 4YIZA 2Y8TA 2X2ZA 3F6KA 3ZLEA 3FGTA 4APLA 2Y8SA 4BWCA 2I2LA 3WSXA 3ZLDA 4N7EA 2Y8RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ZLE A;  3ZLD A;  2Y8T A;  2X2Z A;  4APL A;  2Y8S A;  2Y8R A;  4YIZ A; 
#chains in the Genus database with same CATH topology
 2LOJ A;  1RLH A;  4C16 A;  3FGR A;  4DJZ A;  2YBY A;  2RLP A;  2QY0 A;  4AYD A;  3IU3 I;  3ZD2 A;  4B2R A;  1H2Q P;  1GKN A;  2YRA A;  5DN5 A;  1Q3X A;  2JGX A;  3O8E B;  5HYP A;  1TPM A;  2MCZ A;  3TVJ A;  1E88 A;  3FGT A;  4KKD A;  1FBR A;  1O9A A;  5JPM G;  5HYU B;  1HCC A;  2EC3 A;  4K12 A;  2BZM A;  2O39 C;  2XWJ I;  2XRD A;  1HFI A;  2EHF A;  3NFP I;  2RL0 A;  3IX0 A;  2IZ4 A;  3KXV A;  2XRB A;  1OJV A;  2KMS A;  4WJG 2;  1ZJK A;  2Y8T A;  1ELV A;  1PPQ A;  1MD7 A;  3T5O A;  2IZ3 A;  1MD8 A;  2V8E A;  1SS2 A;  1C1Z A;  1VVC A;  4B2S A;  3R62 A;  3GOV A;  1HFH A;  4YNX A;  2W81 A;  2WII C;  1OK1 A;  3OXU D;  3ZRZ A;  1SRZ A;  1H2P P;  2W80 A;  4MUC A;  3K3T A;  4AYE A;  1TPN A;  3CAL A;  5HZP B;  2CG7 A;  1GKG A;  3OED C;  3L89 M;  3M7P A;  3OP8 A;  5DN4 A;  2G7I A;  3NJA A;  1H03 P;  2XWB F;  4MSL A;  1OJW A;  4PO7 A;  2B5I D;  1Z92 B;  2JGW A;  4YIZ A;  4AYI A;  1H04 P;  1E8B A;  3GXE A;  1G4F A;  4FXG G;  3KZJ A;  2KRI A;  3F6K A;  3ZD1 A;  3EJH A;  2ZYC A;  1GPZ A;  4APL A;  2XQW C;  4CSY A;  2Y8S A;  4IGD A;  4BWC A;  4ONT D;  1QO6 A;  3WSX A;  1E5G A;  3SW0 X;  4J38 B;  1NWV A;  2RKZ A;  2UWN A;  1TPG A;  5FO8 C;  1LY2 A;  1G4G A;  3INB C;  2RKY A;  1OK9 A;  1QUB A;  1U5M A;  2A55 A;  3WSY A;  2JRA A;  2MCY A;  5HYT B;  4F4O C;  2X2Z A;  2CKU A;  1VVD A;  4JHS A;  4LOS A;  1QGB A;  3ZLE A;  3ERB A;  3CI0 J;  2ERJ A;  2RLQ A;  3MQL A;  4A5W B;  3VWO A;  1CKL A;  1OK3 A;  2I2L A;  4PZ5 A;  4AYM A;  1UOT P;  5I0Q B;  3ZLD A;  1OK2 A;  4LOT A;  1OJY A;  4N7E A;  4ZH1 D;  3RJ3 D;  2CG6 A;  2Y8R A;  1GHQ B; 
#chains in the Genus database with same CATH homology
 3NJA A;  3FGR A;  4MSL A;  4PO7 A;  3WSY A;  4YIZ A;  2Y8T A;  2X2Z A;  3F6K A;  3ZLE A;  3FGT A;  4APL A;  2Y8S A;  4BWC A;  2I2L A;  3WSX A;  3ZLD A;  4N7E A;  2Y8R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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