2Y9WA

Crystal structure of ppo3, a tyrosinase from agaricus bisporus, in deoxy-form that contains additional unknown lectin-like subunit
Total Genus 134
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
134
sequence length
391
structure length
391
Chain Sequence
SDKKSLMPLVGIPGEIKNRLNILDFVKNDKFFTLYVRALQVLQARDQSDYSSFFQLGGIHGLPYTEWAKAQPQLHLYKANYCTHGTVLFPTWHRAYESTWEQTLWEAAGTVAQRFTTSDQAEWIQAAKDLRQPFWDWGYWPNDPDFIGLPDQVIRDKQVEITDYNGTKIEVENPILHYKFHPIEPTFEGDFAQWQTTMRYPDVQKQENIEGMIAGIKAAAPGFREWTFNMLTKNYTWELFSNHGAVVGAHANSLEMVHNTVHFLIGRDPTLDPLVPGHMGSVPHAAFDPIFWMHHCNVDRLLALWQTMNYDVYVSEGMNREATMGLIPGQVLTEDSPLEPFYTKNQDPWQSDDLEDWETLGFSYPDFDPVKGKSKEEKSVYINDWVHKHYG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords POLYPHENOL OXIDASE
publication title Crystal Structure of Agaricus Bisporus Mushroom Tyrosinase: Identity of the Tetramer Subunits and Interaction with Tropolone.
pubmed doi rcsb
total genus 134
structure length 391
sequence length 391
chains with identical sequence B
ec nomenclature ec 1.14.18.1: Tyrosinase.
pdb deposition date 2011-02-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00264 Tyrosinase Common central domain of tyrosinase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1280.10 Mainly Alpha Orthogonal Bundle di-copper center containing domain from catechol oxidase Di-copper center containing domain from catechol oxidase 2y9wA00
3QJOA 2ZWGA 1LL1A 2Y9WA 3NQ0A 2ZWFA 4HD6A 2ZWDA 3NTMA 4D87A 3AWZA 5I3AA 3NQ5A 1BUGA 3AWXA 5I3BA 1BT1A 4OUAB 3HHSA 1WX2A 3AWSA 1NOLA 1HCYA 3AWVA 3AWWA 4J6VA 4J6UA 4YZWA 1LLAA 3HHSB 3AX0A 3AWTA 3WKYA 1HC1A 3W6WA 2ZMZA 2P3XA 3WJMA 4P6TA 3AWUA 3W6QA 2ZMXA 3NPYA 1BT2A 2AHLA 5CE9A 4HD4A 1BT3A 5I38A 4OUAA 4P6SA 3GWJA 2Y9XA 3WJMB 4Z10A 4L37A 1OXYA 1WXCA 3NM8A 4J3RA 1WX5A 4Z0ZA 4HD7A 1WX4A 3NQ1A 1LNLA 2ZMYA 1JS8A 3AWYA 4J3QA 2ZWEA 4Z0YA 2AHKA 4P6RA 4J6TA 4L37B 4J3PA
chains in the Genus database with same CATH superfamily
3QJOA 2ZWGA 1LL1A 2Y9WA 3NQ0A 2ZWFA 4HD6A 2ZWDA 3NTMA 4D87A 3AWZA 5I3AA 3NQ5A 1BUGA 3AWXA 5I3BA 1BT1A 4OUAB 3HHSA 1WX2A 3AWSA 1NOLA 1HCYA 3AWVA 3AWWA 4J6VA 4J6UA 4YZWA 1LLAA 3HHSB 3AX0A 3AWTA 3WKYA 1HC1A 3W6WA 2ZMZA 2P3XA 3WJMA 4P6TA 3AWUA 3W6QA 2ZMXA 3NPYA 1BT2A 2AHLA 5CE9A 4HD4A 1BT3A 5I38A 4OUAA 4P6SA 3GWJA 2Y9XA 3WJMB 4Z10A 4L37A 1OXYA 1WXCA 3NM8A 4J3RA 1WX5A 4Z0ZA 4HD7A 1WX4A 3NQ1A 1LNLA 2ZMYA 1JS8A 3AWYA 4J3QA 2ZWEA 4Z0YA 2AHKA 4P6RA 4J6TA 4L37B 4J3PA
chains in the Genus database with same CATH topology
3QJOA 2ZWGA 1LL1A 2Y9WA 3NQ0A 2ZWFA 4HD6A 2ZWDA 3NTMA 4D87A 3AWZA 5I3AA 3NQ5A 1BUGA 3AWXA 5I3BA 1BT1A 4OUAB 3HHSA 1WX2A 3AWSA 1NOLA 1HCYA 3AWVA 3AWWA 4J6VA 4J6UA 4YZWA 1LLAA 3HHSB 3AX0A 3AWTA 3WKYA 1HC1A 3W6WA 2ZMZA 2P3XA 3WJMA 4P6TA 3AWUA 3W6QA 2ZMXA 3NPYA 1BT2A 2AHLA 5CE9A 4HD4A 1BT3A 5I38A 4OUAA 4P6SA 3GWJA 2Y9XA 3WJMB 4Z10A 4L37A 1OXYA 1WXCA 3NM8A 4J3RA 1WX5A 4Z0ZA 4HD7A 1WX4A 3NQ1A 1LNLA 2ZMYA 1JS8A 3AWYA 4J3QA 2ZWEA 4Z0YA 2AHKA 4P6RA 4J6TA 4L37B 4J3PA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3QJO A;  2ZWG A;  1LL1 A;  2Y9W A;  3NQ0 A;  2ZWF A;  4HD6 A;  2ZWD A;  3NTM A;  4D87 A;  3AWZ A;  5I3A A;  3NQ5 A;  1BUG A;  3AWX A;  5I3B A;  1BT1 A;  4OUA B;  3HHS A;  1WX2 A;  3AWS A;  1NOL A;  1HCY A;  3AWV A;  3AWW A;  4J6V A;  4J6U A;  4YZW A;  1LLA A;  3HHS B;  3AX0 A;  3AWT A;  3WKY A;  1HC1 A;  3W6W A;  2ZMZ A;  2P3X A;  3WJM A;  4P6T A;  3AWU A;  3W6Q A;  2ZMX A;  3NPY A;  1BT2 A;  2AHL A;  5CE9 A;  4HD4 A;  1BT3 A;  5I38 A;  4OUA A;  4P6S A;  3GWJ A;  2Y9X A;  3WJM B;  4Z10 A;  4L37 A;  1OXY A;  1WXC A;  3NM8 A;  4J3R A;  1WX5 A;  4Z0Z A;  4HD7 A;  1WX4 A;  3NQ1 A;  1LNL A;  2ZMY A;  1JS8 A;  3AWY A;  4J3Q A;  2ZWE A;  4Z0Y A;  2AHK A;  4P6R A;  4J6T A;  4L37 B;  4J3P A; 
#chains in the Genus database with same CATH topology
 3QJO A;  2ZWG A;  1LL1 A;  2Y9W A;  3NQ0 A;  2ZWF A;  4HD6 A;  2ZWD A;  3NTM A;  4D87 A;  3AWZ A;  5I3A A;  3NQ5 A;  1BUG A;  3AWX A;  5I3B A;  1BT1 A;  4OUA B;  3HHS A;  1WX2 A;  3AWS A;  1NOL A;  1HCY A;  3AWV A;  3AWW A;  4J6V A;  4J6U A;  4YZW A;  1LLA A;  3HHS B;  3AX0 A;  3AWT A;  3WKY A;  1HC1 A;  3W6W A;  2ZMZ A;  2P3X A;  3WJM A;  4P6T A;  3AWU A;  3W6Q A;  2ZMX A;  3NPY A;  1BT2 A;  2AHL A;  5CE9 A;  4HD4 A;  1BT3 A;  5I38 A;  4OUA A;  4P6S A;  3GWJ A;  2Y9X A;  3WJM B;  4Z10 A;  4L37 A;  1OXY A;  1WXC A;  3NM8 A;  4J3R A;  1WX5 A;  4Z0Z A;  4HD7 A;  1WX4 A;  3NQ1 A;  1LNL A;  2ZMY A;  1JS8 A;  3AWY A;  4J3Q A;  2ZWE A;  4Z0Y A;  2AHK A;  4P6R A;  4J6T A;  4L37 B;  4J3P A; 
#chains in the Genus database with same CATH homology
 3QJO A;  2ZWG A;  1LL1 A;  2Y9W A;  3NQ0 A;  2ZWF A;  4HD6 A;  2ZWD A;  3NTM A;  4D87 A;  3AWZ A;  5I3A A;  3NQ5 A;  1BUG A;  3AWX A;  5I3B A;  1BT1 A;  4OUA B;  3HHS A;  1WX2 A;  3AWS A;  1NOL A;  1HCY A;  3AWV A;  3AWW A;  4J6V A;  4J6U A;  4YZW A;  1LLA A;  3HHS B;  3AX0 A;  3AWT A;  3WKY A;  1HC1 A;  3W6W A;  2ZMZ A;  2P3X A;  3WJM A;  4P6T A;  3AWU A;  3W6Q A;  2ZMX A;  3NPY A;  1BT2 A;  2AHL A;  5CE9 A;  4HD4 A;  1BT3 A;  5I38 A;  4OUA A;  4P6S A;  3GWJ A;  2Y9X A;  3WJM B;  4Z10 A;  4L37 A;  1OXY A;  1WXC A;  3NM8 A;  4J3R A;  1WX5 A;  4Z0Z A;  4HD7 A;  1WX4 A;  3NQ1 A;  1LNL A;  2ZMY A;  1JS8 A;  3AWY A;  4J3Q A;  2ZWE A;  4Z0Y A;  2AHK A;  4P6R A;  4J6T A;  4L37 B;  4J3P A; 
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similar chains in the Genus database (?% sequence similarity)
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