2YEPA

Structure of an n-terminal nucleophile (ntn) hydrolase, oat2, in complex with glutamate
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
173
structure length
173
Chain Sequence
TPRGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCREAVADGQARGVVVLARNANVATGLEGEENAREVREAVARALGLPEGEMLIASTGVIGRQYPMESIREHLKTLEWPAGEGGFDRAARAIMTTDTRPKEVRVSVGGATLVGIAKGVGMLEPDMA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords GLUTAMATE N-ACETYLTRANSFERASE 2 ALPHA CHAIN
publication title Structural and Biochemical Analyses Reveal How Ornithine Acetyl Transferase Binds Acidic and Basic Amino Acid Substrates.
pubmed doi rcsb
source organism Streptomyces clavuligerus
total genus 45
structure length 173
sequence length 173
chains with identical sequence C, E, G
ec nomenclature ec 2.3.1.35: Glutamate N-acetyltransferase.
pdb deposition date 2011-03-29
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.70.12 Alpha Beta 4-Layer Sandwich L-amino peptidase D-ALA esterase/amidase L-amino peptidase D-ALA esterase/amidase 2yepA00
2DRHA 1VZ8A 3IT6A 1VRAA 2VZKA 3NFBA 3AXGA 3NDVA 3N33A 4IHDA 4IHEA 3TM2A 3IT4A 3N5IA 2YEPA 3S3UA 3TM1A 3N2WA 1VZ7A 1VZ6A 1B65A 2V4IA
chains in the Genus database with same CATH superfamily
2DRHA 1VZ8A 3IT6A 1VRAA 2VZKA 3NFBA 3AXGA 3NDVA 3N33A 4IHDA 4IHEA 3TM2A 3IT4A 3N5IA 2YEPA 3S3UA 3TM1A 3N2WA 1VZ7A 1VZ6A 1B65A 2V4IA
chains in the Genus database with same CATH topology
2DRHA 1VZ8A 3IT6A 1VRAA 2VZKA 3NFBA 3AXGA 3NDVA 3N33A 4IHDA 4IHEA 3TM2A 3IT4A 3N5IA 2YEPA 3S3UA 3TM1A 3N2WA 1VZ7A 1VZ6A 1B65A 2V4IA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DRH A;  1VZ8 A;  3IT6 A;  1VRA A;  2VZK A;  3NFB A;  3AXG A;  3NDV A;  3N33 A;  4IHD A;  4IHE A;  3TM2 A;  3IT4 A;  3N5I A;  2YEP A;  3S3U A;  3TM1 A;  3N2W A;  1VZ7 A;  1VZ6 A;  1B65 A;  2V4I A; 
#chains in the Genus database with same CATH topology
 2DRH A;  1VZ8 A;  3IT6 A;  1VRA A;  2VZK A;  3NFB A;  3AXG A;  3NDV A;  3N33 A;  4IHD A;  4IHE A;  3TM2 A;  3IT4 A;  3N5I A;  2YEP A;  3S3U A;  3TM1 A;  3N2W A;  1VZ7 A;  1VZ6 A;  1B65 A;  2V4I A; 
#chains in the Genus database with same CATH homology
 2DRH A;  1VZ8 A;  3IT6 A;  1VRA A;  2VZK A;  3NFB A;  3AXG A;  3NDV A;  3N33 A;  4IHD A;  4IHE A;  3TM2 A;  3IT4 A;  3N5I A;  2YEP A;  3S3U A;  3TM1 A;  3N2W A;  1VZ7 A;  1VZ6 A;  1B65 A;  2V4I A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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