2YFBA

X-ray structure of mcps ligand binding domain in complex with succinate
Total Genus 115
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
115
sequence length
235
structure length
235
Chain Sequence
GSHMGDIGQLNKDLTDLRIARLQYMIANGDDTAAANTLAKLDAFSKQQAYLATTFKSPENVKLLGELGDTISAYKLSLNKMRQGYDATRAARVSMDSSAIRADQAMDALSQEVMARPEADSVRLAQYQLISKARQQLLQVRIDVRGYIAENSSANEQAALRQLDAALADTDNLKRQLPSEDARLQQFENAVLAYRDAVRQFRDAVANITTSRAEMTVQGADIVKRSDALYQIQLE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Receptor
molecule keywords METHYL-ACCEPTING CHEMOTAXIS TRANSDUCER
publication title Evidence for Chemoreceptors with Bimodular Ligand-Binding Regions Harboring Two Signal-Binding Sites.
pubmed doi rcsb
source organism Pseudomonas putida
total genus 115
structure length 235
sequence length 235
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-04-05
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1440.210 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) de novo design (two linked rop proteins) 2yfbA01
1.20.1440.210 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) de novo design (two linked rop proteins) 2yfbA02
2YFAA 3VA9A 2YFBA
chains in the Genus database with same CATH superfamily
4JCVE 2V6EA 3DO9A 1YO7A 1W3SA 2JAEA 2L1LB 2FEFA 2ZRRA 3FVVA 4OAVB 2A2CA 4O1OA 4I1TA 2K19A 4YZCA 3LJ1A 2RIOA 3UITA 2MJFB 4GXTA 3B55A 2XMXA 1TDPA 2JB2A 1JQOA 2ZW3A 4NV2A 5HGIA 3FNBA 4DWLA 5LNK1 4PL4A 2JBWA 2RADA 4O1PA 4Z7GA 2IP6A 2KKMA 3AJFA 2BL8A 3LJ2A 3IAS1 2F6MB 2YFAA 2BL7A 4AS3A 1U5KA 4YZ9A 3F4MA 2A2DA 4YZDA 4PL5A 3P23A 2QSBA 3JSBA 1SJ8A 4HEA1 3VA9A 2HGKA 3DA4A 2JB1A 4Z7HA 2V1CC 2FU2A 3FBVA 2XTRA 4HFVA 4OAUC 2CAZB 4G76A 3KP9A 2XTQA 3I9V1 3L0IA 3SDJA 2JB3A 2E8GA 4G75A 2QZGA 2F66B 4U6RA 2GSCA 3DA3A 2RLDA 2FUG1 2P22B 2ETDA 3LJ0A 4NV5A 4PL3A 3Q8DA 2YFBA 2QGMA 3IAM1 4AS2A 4Q9VA
chains in the Genus database with same CATH topology
4JCVE 2V6EA 3DO9A 1YO7A 1W3SA 2JAEA 2L1LB 2ZRRA 4OAVB 2A2CA 4O1OA 4I1TA 2K19A 4YZCA 3LJ1A 2RIOA 3UITA 2MJFB 4GXTA 2XMXA 2JB2A 4NV2A 5HGIA 4DWLA 5LNK1 4PL4A 4O1PA 4Z7GA 2IP6A 2KKMA 3AJFA 3LJ2A 3IAS1 2F6MB 2YFAA 4AS3A 1U5KA 4YZ9A 3F4MA 2A2DA 4YZDA 4PL5A 3P23A 3JSBA 1SJ8A 4HEA1 3VA9A 3DA4A 2JB1A 4Z7HA 2V1CC 3FBVA 2XTRA 4HFVA 4OAUC 2CAZB 4G76A 3KP9A 2XTQA 3I9V1 3L0IA 3SDJA 2JB3A 2E8GA 4G75A 2F66B 4U6RA 3DA3A 2FUG1 2P22B 3LJ0A 4NV5A 4PL3A 3Q8DA 2YFBA 3IAM1 4AS2A 4Q9VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YFA A;  3VA9 A;  2YFB A; 
#chains in the Genus database with same CATH topology
 4JCV E;  2V6E A;  3DO9 A;  1YO7 A;  1W3S A;  2JAE A;  2L1L B;  2FEF A;  2ZRR A;  3FVV A;  4OAV B;  2A2C A;  4O1O A;  4I1T A;  2K19 A;  4YZC A;  3LJ1 A;  2RIO A;  3UIT A;  2MJF B;  4GXT A;  3B55 A;  2XMX A;  1TDP A;  2JB2 A;  1JQO A;  2ZW3 A;  4NV2 A;  5HGI A;  3FNB A;  4DWL A;  5LNK 1;  4PL4 A;  2JBW A;  2RAD A;  4O1P A;  4Z7G A;  2IP6 A;  2KKM A;  3AJF A;  2BL8 A;  3LJ2 A;  3IAS 1;  2F6M B;  2YFA A;  2BL7 A;  4AS3 A;  1U5K A;  4YZ9 A;  3F4M A;  2A2D A;  4YZD A;  4PL5 A;  3P23 A;  2QSB A;  3JSB A;  1SJ8 A;  4HEA 1;  3VA9 A;  2HGK A;  3DA4 A;  2JB1 A;  4Z7H A;  2V1C C;  2FU2 A;  3FBV A;  2XTR A;  4HFV A;  4OAU C;  2CAZ B;  4G76 A;  3KP9 A;  2XTQ A;  3I9V 1;  3L0I A;  3SDJ A;  2JB3 A;  2E8G A;  4G75 A;  2QZG A;  2F66 B;  4U6R A;  2GSC A;  3DA3 A;  2RLD A;  2FUG 1;  2P22 B;  2ETD A;  3LJ0 A;  4NV5 A;  4PL3 A;  3Q8D A;  2YFB A;  2QGM A;  3IAM 1;  4AS2 A;  4Q9V A; 
#chains in the Genus database with same CATH homology
 4JCV E;  2V6E A;  3DO9 A;  1YO7 A;  1W3S A;  2JAE A;  2L1L B;  2ZRR A;  4OAV B;  2A2C A;  4O1O A;  4I1T A;  2K19 A;  4YZC A;  3LJ1 A;  2RIO A;  3UIT A;  2MJF B;  4GXT A;  2XMX A;  2JB2 A;  4NV2 A;  5HGI A;  4DWL A;  5LNK 1;  4PL4 A;  4O1P A;  4Z7G A;  2IP6 A;  2KKM A;  3AJF A;  3LJ2 A;  3IAS 1;  2F6M B;  2YFA A;  4AS3 A;  1U5K A;  4YZ9 A;  3F4M A;  2A2D A;  4YZD A;  4PL5 A;  3P23 A;  3JSB A;  1SJ8 A;  4HEA 1;  3VA9 A;  3DA4 A;  2JB1 A;  4Z7H A;  2V1C C;  3FBV A;  2XTR A;  4HFV A;  4OAU C;  2CAZ B;  4G76 A;  3KP9 A;  2XTQ A;  3I9V 1;  3L0I A;  3SDJ A;  2JB3 A;  2E8G A;  4G75 A;  2F66 B;  4U6R A;  3DA3 A;  2FUG 1;  2P22 B;  3LJ0 A;  4NV5 A;  4PL3 A;  3Q8D A;  2YFB A;  3IAM 1;  4AS2 A;  4Q9V A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...