2YFLA

Crystal structure of biphenyl dioxygenase variant rr41 with 2-chloro dibenzofuran
Total Genus 132
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
132
sequence length
442
structure length
433
Chain Sequence
NWTPEAIRGLVDQEKGLLDPRIYADQSLYELELERVFGRSWLLLGHESHVPETGDFLATYMGEDPVVMVRQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDIAGKLVNVPFEKEAFFDKAEWGPLQARVATYKGLVFANWDVQAPDLETYLGDARPYMDVMLDRTPAGTVAIGGMQKWVIPCNWKFAAEQFCSDMYHAGTTTHLSGILAGIPPEMDLSQAQIPTKGNQFRAAWGGHGSGWYVDEPGSLLAVMGPKVTQYWTEGPAAELAEQRLGHTGMPVRRMVGQHMTIFPTCSFLPAMNQIRVWHPRGPNEIEVWAFTLVDADAPAEIKEEYRRHNIRNFSAGGVFEQDDGENWVEIQKGLRGYKAKSQPFNAQMGLGRSQTGHPDFPGNVGYVYAEEAARGMYHHWMRMMSEPSWATLKP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
source organism Burkholderia xenovorans
publication title Structural Insights Into the Metabolism of 2-Chlorodibenzofuran by an Evolved Biphenyl Dioxygenase.
pubmed doi rcsb
molecule keywords BIPHENYL DIOXYGENASE SUBUNIT ALPHA
total genus 132
structure length 433
sequence length 442
chains with identical sequence C, E, G, I, K
ec nomenclature ec 1.14.12.18: Biphenyl 2,3-dioxygenase.
pdb deposition date 2011-04-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2yflA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 2yflA01
3TGUE 5BOKA 3GKEA 4NBDA 4HM7A 1UUWA 4NBHA 4NBED 1L0LE 4NBBD 1L0NE 5KKZC 4HM1A 4QDDA 2E75D 2XR8A 4QDFB 2HMMA 4P1BH 1VF5D 4NBDD 4NBAA 3L72E 4NBFA 4NBHD 3GZXA 3L71E 4HKVA 2NUMA 3GKQA 3GOBA 3H1LE 2YFJA 1NTME 5AEUA 3GCEA 2HMOA 3VCAA 3CX5E 4AAYB 4HM5A 2B1XA 3CXHE 4NBFD 2D2CD 2BCCE 4NBAD 1SQQE 4HM4A 4HM6A 3H1KE 2GBXA 2E4QA 3GTEA 4QDFA 2JO6A 2E76D 3H1IE 1BE3E 3L74E 1O7NA 1O7GA 2BMOA 3L75E 2DE6A 2QPZA 1FQTA 3L70E 2QJPC 5CXMA 4NB9A 2A06E 1NU1E 3GCFA 2HMJA 2NVFA 3GTSA 1EZVE 2DE6D 2YIUC 2FYUE 3GL2A 1NDOA 4NB9D 2BMQA 4AIVA 2DE5A 2IBZE 2B24A 2XRXA 4QUPA 3VCPA 3VMIA 2CKFA 1KB9E 2HMKA 1WW9A 2E4PA 4PV1D 4HJLA 1JM1A 1PP9E 3BCCE 3EN1A 1SQPE 2DE5D 1EG9A 2E74D 1SQXE 3GB4A 4HM2A 3C0DA 4QCKA 4QUQA 3VMID 1KYOE 4H44D 1G8KB 2I7FA 2NVEA 3H1JE 3VMHA 2HMLA 1VCKA 2BMRA 2QJKC 1O7WA 3FOUA 1P84E 1VM9A 4EMJB 2DE7A 1O7PA 1RFSA 1RIEA 1ZRTE 5KLIC 5HL4A 1NTKE 2ZYLA 3H1HE 1O7MA 3VMHD 4U3FE 3D89A 2DE7D 1Z01A 3DQYA 3AZCA 2NVGA 5KLVE 1WQLA 3GZYA 1SQBE 5AEWA 2FYNC 2YFIA 1Z03A 4NB8A 2GBWA 2XSHA 4PD4E 4HM0A 1Z02A 4HM8A 3VMGA 1SJGA 1O7HA 4NBCA 1NTZE 1ULJA 2XSOA 4NB8D 3EQQA 4NBGA 2YVJB 2JZAA 3VMGD 1UUVA 4P1CH 4HM3A 1ULIA 4NBCD 1SQVE 2QJYC 2YFLA 4H13D 4NBGD 2HMNA 3CWBE 3GL0A 2Q3WA 4H0LD 3N0QA 4QURA 1Q90C 1BCCE 3L73E 4QDCA 4OGQD 4NBEA 4NBBA 2NWFA 1NYKA 2ZT9D 1PPJE 1G8JB 2NUKA
chains in the Genus database with same CATH superfamily
3TGUE 5BOKA 3GKEA 4NBDA 4HM7A 1UUWA 4NBHA 4NBED 1L0LE 4NBBD 1L0NE 5KKZC 4HM1A 4QDDA 2E75D 2XR8A 4QDFB 2HMMA 4P1BH 1VF5D 4NBDD 4NBAA 3L72E 4NBFA 4NBHD 3GZXA 3L71E 4HKVA 2NUMA 3GKQA 3GOBA 3H1LE 2YFJA 1NTME 5AEUA 3GCEA 2HMOA 3VCAA 3CX5E 4AAYB 4HM5A 2B1XA 3CXHE 4NBFD 2D2CD 2BCCE 4NBAD 1SQQE 4HM4A 4HM6A 3H1KE 2GBXA 2E4QA 3GTEA 4QDFA 2JO6A 2E76D 3H1IE 1BE3E 3L74E 1O7NA 1O7GA 2BMOA 3L75E 2DE6A 2QPZA 1FQTA 3L70E 2QJPC 5CXMA 4NB9A 2A06E 1NU1E 3GCFA 2HMJA 2NVFA 3GTSA 1EZVE 2DE6D 2YIUC 2FYUE 3GL2A 1NDOA 4NB9D 2BMQA 4AIVA 2DE5A 2IBZE 2B24A 2XRXA 4QUPA 3VCPA 3VMIA 2CKFA 1KB9E 2HMKA 1WW9A 2E4PA 4PV1D 4HJLA 1JM1A 1PP9E 3BCCE 3EN1A 1SQPE 2DE5D 1EG9A 2E74D 1SQXE 3GB4A 4HM2A 3C0DA 4QCKA 4QUQA 3VMID 1KYOE 4H44D 1G8KB 2I7FA 2NVEA 3H1JE 3VMHA 2HMLA 1VCKA 2BMRA 2QJKC 1O7WA 3FOUA 1P84E 1VM9A 4EMJB 2DE7A 1O7PA 1RFSA 1RIEA 1ZRTE 5KLIC 5HL4A 1NTKE 2ZYLA 3H1HE 1O7MA 3VMHD 4U3FE 3D89A 2DE7D 1Z01A 3DQYA 3AZCA 2NVGA 5KLVE 1WQLA 3GZYA 1SQBE 5AEWA 2FYNC 2YFIA 1Z03A 4NB8A 2GBWA 2XSHA 4PD4E 4HM0A 1Z02A 4HM8A 3VMGA 1SJGA 1O7HA 4NBCA 1NTZE 1ULJA 2XSOA 4NB8D 3EQQA 4NBGA 2YVJB 2JZAA 3VMGD 1UUVA 4P1CH 4HM3A 1ULIA 4NBCD 1SQVE 2QJYC 2YFLA 4H13D 4NBGD 2HMNA 3CWBE 3GL0A 2Q3WA 4H0LD 3N0QA 4QURA 1Q90C 1BCCE 3L73E 4QDCA 4OGQD 4NBEA 4NBBA 2NWFA 1NYKA 2ZT9D 1PPJE 1G8JB 2NUKA
chains in the Genus database with same CATH topology
3TGUE 5BOKA 3GKEA 4NBDA 4HM7A 1UUWA 4NBHA 4NBED 1L0LE 4NBBD 1L0NE 5KKZC 4HM1A 4QDDA 2E75D 2XR8A 4QDFB 2HMMA 4P1BH 1VF5D 4NBDD 4NBAA 3L72E 4NBFA 4NBHD 3GZXA 3L71E 4HKVA 2NUMA 3GKQA 3GOBA 3H1LE 2YFJA 1NTME 5AEUA 3GCEA 2HMOA 3VCAA 3CX5E 4AAYB 4HM5A 2B1XA 3CXHE 4NBFD 2D2CD 2BCCE 4NBAD 1SQQE 4HM4A 4HM6A 3H1KE 2GBXA 2E4QA 3GTEA 4QDFA 2JO6A 2E76D 3H1IE 1BE3E 3L74E 1O7NA 1O7GA 2BMOA 3L75E 2DE6A 2QPZA 1FQTA 3L70E 2QJPC 5CXMA 4NB9A 2A06E 1NU1E 3GCFA 2HMJA 2NVFA 3GTSA 1EZVE 2DE6D 2YIUC 2FYUE 3GL2A 1NDOA 4NB9D 2BMQA 4AIVA 2DE5A 2IBZE 2B24A 2XRXA 4QUPA 3VCPA 3VMIA 2CKFA 1KB9E 2HMKA 1WW9A 2E4PA 4PV1D 4HJLA 1JM1A 1PP9E 3BCCE 3EN1A 1SQPE 2DE5D 1EG9A 2E74D 1SQXE 3GB4A 4HM2A 3C0DA 4QCKA 4QUQA 3VMID 1KYOE 4H44D 1G8KB 2I7FA 2NVEA 3H1JE 3VMHA 2HMLA 1VCKA 2BMRA 2QJKC 1O7WA 3FOUA 1P84E 1VM9A 4EMJB 2DE7A 1O7PA 1RFSA 1RIEA 1ZRTE 5KLIC 5HL4A 1NTKE 2ZYLA 3H1HE 1O7MA 3VMHD 4U3FE 3D89A 2DE7D 1Z01A 3DQYA 3AZCA 2NVGA 5KLVE 1WQLA 3GZYA 1SQBE 5AEWA 2FYNC 2YFIA 1Z03A 4NB8A 2GBWA 2XSHA 4PD4E 4HM0A 1Z02A 4HM8A 3VMGA 1SJGA 1O7HA 4NBCA 1NTZE 1ULJA 2XSOA 4NB8D 3EQQA 4NBGA 2YVJB 2JZAA 3VMGD 1UUVA 4P1CH 4HM3A 1ULIA 4NBCD 1SQVE 2QJYC 2YFLA 4H13D 4NBGD 2HMNA 3CWBE 3GL0A 2Q3WA 4H0LD 3N0QA 4QURA 1Q90C 1BCCE 3L73E 4QDCA 4OGQD 4NBEA 4NBBA 2NWFA 1NYKA 2ZT9D 1PPJE 1G8JB 2NUKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TGU E;  5BOK A;  3GKE A;  4NBD A;  4HM7 A;  1UUW A;  4NBH A;  4NBE D;  1L0L E;  4NBB D;  1L0N E;  5KKZ C;  4HM1 A;  4QDD A;  2E75 D;  2XR8 A;  4QDF B;  2HMM A;  4P1B H;  1VF5 D;  4NBD D;  4NBA A;  3L72 E;  4NBF A;  4NBH D;  3GZX A;  3L71 E;  4HKV A;  2NUM A;  3GKQ A;  3GOB A;  3H1L E;  2YFJ A;  1NTM E;  5AEU A;  3GCE A;  2HMO A;  3VCA A;  3CX5 E;  4AAY B;  4HM5 A;  2B1X A;  3CXH E;  4NBF D;  2D2C D;  2BCC E;  4NBA D;  1SQQ E;  4HM4 A;  4HM6 A;  3H1K E;  2GBX A;  2E4Q A;  3GTE A;  4QDF A;  2JO6 A;  2E76 D;  3H1I E;  1BE3 E;  3L74 E;  1O7N A;  1O7G A;  2BMO A;  3L75 E;  2DE6 A;  2QPZ A;  1FQT A;  3L70 E;  2QJP C;  5CXM A;  4NB9 A;  2A06 E;  1NU1 E;  3GCF A;  2HMJ A;  2NVF A;  3GTS A;  1EZV E;  2DE6 D;  2YIU C;  2FYU E;  3GL2 A;  1NDO A;  4NB9 D;  2BMQ A;  4AIV A;  2DE5 A;  2IBZ E;  2B24 A;  2XRX A;  4QUP A;  3VCP A;  3VMI A;  2CKF A;  1KB9 E;  2HMK A;  1WW9 A;  2E4P A;  4PV1 D;  4HJL A;  1JM1 A;  1PP9 E;  3BCC E;  3EN1 A;  1SQP E;  2DE5 D;  1EG9 A;  2E74 D;  1SQX E;  3GB4 A;  4HM2 A;  3C0D A;  4QCK A;  4QUQ A;  3VMI D;  1KYO E;  4H44 D;  1G8K B;  2I7F A;  2NVE A;  3H1J E;  3VMH A;  2HML A;  1VCK A;  2BMR A;  2QJK C;  1O7W A;  3FOU A;  1P84 E;  1VM9 A;  4EMJ B;  2DE7 A;  1O7P A;  1RFS A;  1RIE A;  1ZRT E;  5KLI C;  5HL4 A;  1NTK E;  2ZYL A;  3H1H E;  1O7M A;  3VMH D;  4U3F E;  3D89 A;  2DE7 D;  1Z01 A;  3DQY A;  3AZC A;  2NVG A;  5KLV E;  1WQL A;  3GZY A;  1SQB E;  5AEW A;  2FYN C;  2YFI A;  1Z03 A;  4NB8 A;  2GBW A;  2XSH A;  4PD4 E;  4HM0 A;  1Z02 A;  4HM8 A;  3VMG A;  1SJG A;  1O7H A;  4NBC A;  1NTZ E;  1ULJ A;  2XSO A;  4NB8 D;  3EQQ A;  4NBG A;  2YVJ B;  2JZA A;  3VMG D;  1UUV A;  4P1C H;  4HM3 A;  1ULI A;  4NBC D;  1SQV E;  2QJY C;  2YFL A;  4H13 D;  4NBG D;  2HMN A;  3CWB E;  3GL0 A;  2Q3W A;  4H0L D;  3N0Q A;  4QUR A;  1Q90 C;  1BCC E;  3L73 E;  4QDC A;  4OGQ D;  4NBE A;  4NBB A;  2NWF A;  1NYK A;  2ZT9 D;  1PPJ E;  1G8J B;  2NUK A; 
#chains in the Genus database with same CATH topology
 3TGU E;  5BOK A;  3GKE A;  4NBD A;  4HM7 A;  1UUW A;  4NBH A;  4NBE D;  1L0L E;  4NBB D;  1L0N E;  5KKZ C;  4HM1 A;  4QDD A;  2E75 D;  2XR8 A;  4QDF B;  2HMM A;  4P1B H;  1VF5 D;  4NBD D;  4NBA A;  3L72 E;  4NBF A;  4NBH D;  3GZX A;  3L71 E;  4HKV A;  2NUM A;  3GKQ A;  3GOB A;  3H1L E;  2YFJ A;  1NTM E;  5AEU A;  3GCE A;  2HMO A;  3VCA A;  3CX5 E;  4AAY B;  4HM5 A;  2B1X A;  3CXH E;  4NBF D;  2D2C D;  2BCC E;  4NBA D;  1SQQ E;  4HM4 A;  4HM6 A;  3H1K E;  2GBX A;  2E4Q A;  3GTE A;  4QDF A;  2JO6 A;  2E76 D;  3H1I E;  1BE3 E;  3L74 E;  1O7N A;  1O7G A;  2BMO A;  3L75 E;  2DE6 A;  2QPZ A;  1FQT A;  3L70 E;  2QJP C;  5CXM A;  4NB9 A;  2A06 E;  1NU1 E;  3GCF A;  2HMJ A;  2NVF A;  3GTS A;  1EZV E;  2DE6 D;  2YIU C;  2FYU E;  3GL2 A;  1NDO A;  4NB9 D;  2BMQ A;  4AIV A;  2DE5 A;  2IBZ E;  2B24 A;  2XRX A;  4QUP A;  3VCP A;  3VMI A;  2CKF A;  1KB9 E;  2HMK A;  1WW9 A;  2E4P A;  4PV1 D;  4HJL A;  1JM1 A;  1PP9 E;  3BCC E;  3EN1 A;  1SQP E;  2DE5 D;  1EG9 A;  2E74 D;  1SQX E;  3GB4 A;  4HM2 A;  3C0D A;  4QCK A;  4QUQ A;  3VMI D;  1KYO E;  4H44 D;  1G8K B;  2I7F A;  2NVE A;  3H1J E;  3VMH A;  2HML A;  1VCK A;  2BMR A;  2QJK C;  1O7W A;  3FOU A;  1P84 E;  1VM9 A;  4EMJ B;  2DE7 A;  1O7P A;  1RFS A;  1RIE A;  1ZRT E;  5KLI C;  5HL4 A;  1NTK E;  2ZYL A;  3H1H E;  1O7M A;  3VMH D;  4U3F E;  3D89 A;  2DE7 D;  1Z01 A;  3DQY A;  3AZC A;  2NVG A;  5KLV E;  1WQL A;  3GZY A;  1SQB E;  5AEW A;  2FYN C;  2YFI A;  1Z03 A;  4NB8 A;  2GBW A;  2XSH A;  4PD4 E;  4HM0 A;  1Z02 A;  4HM8 A;  3VMG A;  1SJG A;  1O7H A;  4NBC A;  1NTZ E;  1ULJ A;  2XSO A;  4NB8 D;  3EQQ A;  4NBG A;  2YVJ B;  2JZA A;  3VMG D;  1UUV A;  4P1C H;  4HM3 A;  1ULI A;  4NBC D;  1SQV E;  2QJY C;  2YFL A;  4H13 D;  4NBG D;  2HMN A;  3CWB E;  3GL0 A;  2Q3W A;  4H0L D;  3N0Q A;  4QUR A;  1Q90 C;  1BCC E;  3L73 E;  4QDC A;  4OGQ D;  4NBE A;  4NBB A;  2NWF A;  1NYK A;  2ZT9 D;  1PPJ E;  1G8J B;  2NUK A; 
#chains in the Genus database with same CATH homology
 3TGU E;  5BOK A;  3GKE A;  4NBD A;  4HM7 A;  1UUW A;  4NBH A;  4NBE D;  1L0L E;  4NBB D;  1L0N E;  5KKZ C;  4HM1 A;  4QDD A;  2E75 D;  2XR8 A;  4QDF B;  2HMM A;  4P1B H;  1VF5 D;  4NBD D;  4NBA A;  3L72 E;  4NBF A;  4NBH D;  3GZX A;  3L71 E;  4HKV A;  2NUM A;  3GKQ A;  3GOB A;  3H1L E;  2YFJ A;  1NTM E;  5AEU A;  3GCE A;  2HMO A;  3VCA A;  3CX5 E;  4AAY B;  4HM5 A;  2B1X A;  3CXH E;  4NBF D;  2D2C D;  2BCC E;  4NBA D;  1SQQ E;  4HM4 A;  4HM6 A;  3H1K E;  2GBX A;  2E4Q A;  3GTE A;  4QDF A;  2JO6 A;  2E76 D;  3H1I E;  1BE3 E;  3L74 E;  1O7N A;  1O7G A;  2BMO A;  3L75 E;  2DE6 A;  2QPZ A;  1FQT A;  3L70 E;  2QJP C;  5CXM A;  4NB9 A;  2A06 E;  1NU1 E;  3GCF A;  2HMJ A;  2NVF A;  3GTS A;  1EZV E;  2DE6 D;  2YIU C;  2FYU E;  3GL2 A;  1NDO A;  4NB9 D;  2BMQ A;  4AIV A;  2DE5 A;  2IBZ E;  2B24 A;  2XRX A;  4QUP A;  3VCP A;  3VMI A;  2CKF A;  1KB9 E;  2HMK A;  1WW9 A;  2E4P A;  4PV1 D;  4HJL A;  1JM1 A;  1PP9 E;  3BCC E;  3EN1 A;  1SQP E;  2DE5 D;  1EG9 A;  2E74 D;  1SQX E;  3GB4 A;  4HM2 A;  3C0D A;  4QCK A;  4QUQ A;  3VMI D;  1KYO E;  4H44 D;  1G8K B;  2I7F A;  2NVE A;  3H1J E;  3VMH A;  2HML A;  1VCK A;  2BMR A;  2QJK C;  1O7W A;  3FOU A;  1P84 E;  1VM9 A;  4EMJ B;  2DE7 A;  1O7P A;  1RFS A;  1RIE A;  1ZRT E;  5KLI C;  5HL4 A;  1NTK E;  2ZYL A;  3H1H E;  1O7M A;  3VMH D;  4U3F E;  3D89 A;  2DE7 D;  1Z01 A;  3DQY A;  3AZC A;  2NVG A;  5KLV E;  1WQL A;  3GZY A;  1SQB E;  5AEW A;  2FYN C;  2YFI A;  1Z03 A;  4NB8 A;  2GBW A;  2XSH A;  4PD4 E;  4HM0 A;  1Z02 A;  4HM8 A;  3VMG A;  1SJG A;  1O7H A;  4NBC A;  1NTZ E;  1ULJ A;  2XSO A;  4NB8 D;  3EQQ A;  4NBG A;  2YVJ B;  2JZA A;  3VMG D;  1UUV A;  4P1C H;  4HM3 A;  1ULI A;  4NBC D;  1SQV E;  2QJY C;  2YFL A;  4H13 D;  4NBG D;  2HMN A;  3CWB E;  3GL0 A;  2Q3W A;  4H0L D;  3N0Q A;  4QUR A;  1Q90 C;  1BCC E;  3L73 E;  4QDC A;  4OGQ D;  4NBE A;  4NBB A;  2NWF A;  1NYK A;  2ZT9 D;  1PPJ E;  1G8J B;  2NUK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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