2YFLA

Crystal structure of biphenyl dioxygenase variant rr41 with 2-chloro dibenzofuran
Total Genus 132
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
132
sequence length
442
structure length
433
Chain Sequence
NWTPEAIRGLVDQEKGLLDPRIYADQSLYELELERVFGRSWLLLGHESHVPETGDFLATYMGEDPVVMVRQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDIAGKLVNVPFEKEAFFDKAEWGPLQARVATYKGLVFANWDVQAPDLETYLGDARPYMDVMLDRTPAGTVAIGGMQKWVIPCNWKFAAEQFCSDMYHAGTTTHLSGILAGIPPEMDLSQAQIPTKGNQFRAAWGGHGSGWYVDEPGSLLAVMGPKVTQYWTEGPAAELAEQRLGHTGMPVRRMVGQHMTIFPTCSFLPAMNQIRVWHPRGPNEIEVWAFTLVDADAPAEIKEEYRRHNIRNFSAGGVFEQDDGENWVEIQKGLRGYKAKSQPFNAQMGLGRSQTGHPDFPGNVGYVYAEEAARGMYHHWMRMMSEPSWATLKP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural Insights Into the Metabolism of 2-Chlorodibenzofuran by an Evolved Biphenyl Dioxygenase.
pubmed doi rcsb
molecule keywords BIPHENYL DIOXYGENASE SUBUNIT ALPHA
source organism Burkholderia xenovorans
molecule tags Oxidoreductase
total genus 132
structure length 433
sequence length 442
chains with identical sequence C, E, G, I, K
ec nomenclature ec 1.14.12.18: Biphenyl 2,3-dioxygenase.
pdb deposition date 2011-04-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2yflA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 2yflA01
1NTZE 2QJYC 4QDDA 2BMRA 4HM6A 4NBGA 4NBHD 2HMOA 1SQXE 4H13D 1Z03A 3H1KE 4NBBD 1L0NE 1O7PA 3GCEA 3EN1A 3H1HE 4QDFA 1PP9E 2E75D 5KKZC 1JM1A 1PPJE 1L0LE 2XSOA 1Z02A 2YFLA 4NBCD 4P1BH 3GKQA 3VMID 1O7NA 2ZT9D 5KLIC 1NDOA 3H1LE 4NBEA 2IBZE 2DE7A 2NVEA 2YIUC 5KLVE 2QJKC 1Z01A 3L73E 3VMHD 3AZCA 4NBAD 2XSHA 4NB9A 2BMQA 2DE6A 4NBDA 3C0DA 4HM0A 3GTSA 1RFSA 3L75E 2QJPC 4AAYB 2FYNC 1SQPE 2XR8A 3L71E 2DE5D 1SQVE 1SQQE 4NBGD 3L74E 4HM8A 1EG9A 1KYOE 4EMJB 3GL0A 2GBXA 4H0LD 2E4PA 2YVJB 3VMGA 4HM3A 4HJLA 3GKEA 4NBFA 1Q90C 1RIEA 3CXHE 2A06E 1SQBE 1NTME 2E74D 4OGQD 4QDCA 4HM5A 3L72E 2Q3WA 3N0QA 1O7HA 1NYKA 3GL2A 4PV1D 3GCFA 2E4QA 1WQLA 4NBED 2HMNA 3GZYA 3L70E 2BMOA 1BE3E 1VM9A 1ZRTE 2DE7D 3DQYA 1O7MA 1O7WA 2FYUE 4NB9D 1G8KB 1KB9E 3VCPA 5AEUA 4QUQA 2DE6D 2GBWA 4HKVA 4NBDD 3VCAA 2YFIA 4NB8A 2NUMA 1G8JB 2HMMA 2B1XA 1VF5D 2B24A 2HMLA 2D2CD 2I7FA 4PD4E 1WW9A 2JO6A 3GOBA 3GTEA 1BCCE 4NBFD 5HL4A 2CKFA 3VMHA 3TGUE 2ZYLA 4H44D 4HM7A 3CX5E 2NVGA 2HMKA 2XRXA 1UUVA 1UUWA 2E76D 1ULJA 1SJGA 3GZXA 4U3FE 4NBHA 1VCKA 1EZVE 3BCCE 2DE5A 1P84E 3CWBE 4NBBA 1FQTA 2NVFA 3GB4A 2NUKA 1NTKE 4QURA 3H1IE 4QUPA 3H1JE 2BCCE 5BOKA 4NBCA 4HM2A 3VMIA 4NB8D 3FOUA 5CXMA 3EQQA 1NU1E 4HM1A 4HM4A 1ULIA 3D89A 3VMGD 2JZAA 4QDFB 4QCKA 4AIVA 5AEWA 2YFJA 2HMJA 2QPZA 4P1CH 4NBAA 1O7GA 2NWFA
chains in the Genus database with same CATH superfamily
1NTZE 2QJYC 4QDDA 2BMRA 4HM6A 4NBGA 4NBHD 2HMOA 1SQXE 4H13D 1Z03A 3H1KE 4NBBD 1L0NE 1O7PA 3GCEA 3EN1A 3H1HE 4QDFA 1PP9E 2E75D 5KKZC 1JM1A 1PPJE 1L0LE 2XSOA 1Z02A 2YFLA 4NBCD 4P1BH 3GKQA 3VMID 1O7NA 2ZT9D 5KLIC 1NDOA 3H1LE 4NBEA 2IBZE 2DE7A 2NVEA 2YIUC 5KLVE 2QJKC 1Z01A 3L73E 3VMHD 3AZCA 4NBAD 2XSHA 4NB9A 2BMQA 2DE6A 4NBDA 3C0DA 4HM0A 3GTSA 1RFSA 3L75E 2QJPC 4AAYB 2FYNC 1SQPE 2XR8A 3L71E 2DE5D 1SQVE 1SQQE 4NBGD 3L74E 4HM8A 1EG9A 1KYOE 4EMJB 3GL0A 2GBXA 4H0LD 2E4PA 2YVJB 3VMGA 4HM3A 4HJLA 3GKEA 4NBFA 1Q90C 1RIEA 3CXHE 2A06E 1SQBE 1NTME 2E74D 4OGQD 4QDCA 4HM5A 3L72E 2Q3WA 3N0QA 1O7HA 1NYKA 3GL2A 4PV1D 3GCFA 2E4QA 1WQLA 4NBED 2HMNA 3GZYA 3L70E 2BMOA 1BE3E 1VM9A 1ZRTE 2DE7D 3DQYA 1O7MA 1O7WA 2FYUE 4NB9D 1G8KB 1KB9E 3VCPA 5AEUA 4QUQA 2DE6D 2GBWA 4HKVA 4NBDD 3VCAA 2YFIA 4NB8A 2NUMA 1G8JB 2HMMA 2B1XA 1VF5D 2B24A 2HMLA 2D2CD 2I7FA 4PD4E 1WW9A 2JO6A 3GOBA 3GTEA 1BCCE 4NBFD 5HL4A 2CKFA 3VMHA 3TGUE 2ZYLA 4H44D 4HM7A 3CX5E 2NVGA 2HMKA 2XRXA 1UUVA 1UUWA 2E76D 1ULJA 1SJGA 3GZXA 4U3FE 4NBHA 1VCKA 1EZVE 3BCCE 2DE5A 1P84E 3CWBE 4NBBA 1FQTA 2NVFA 3GB4A 2NUKA 1NTKE 4QURA 3H1IE 4QUPA 3H1JE 2BCCE 5BOKA 4NBCA 4HM2A 3VMIA 4NB8D 3FOUA 5CXMA 3EQQA 1NU1E 4HM1A 4HM4A 1ULIA 3D89A 3VMGD 2JZAA 4QDFB 4QCKA 4AIVA 5AEWA 2YFJA 2HMJA 2QPZA 4P1CH 4NBAA 1O7GA 2NWFA
chains in the Genus database with same CATH topology
1NTZE 2QJYC 4QDDA 2BMRA 4HM6A 4NBGA 4NBHD 2HMOA 1SQXE 4H13D 1Z03A 3H1KE 4NBBD 1L0NE 1O7PA 3GCEA 3EN1A 3H1HE 4QDFA 1PP9E 2E75D 5KKZC 1JM1A 1PPJE 1L0LE 2XSOA 1Z02A 2YFLA 4NBCD 4P1BH 3GKQA 3VMID 1O7NA 2ZT9D 5KLIC 1NDOA 3H1LE 4NBEA 2IBZE 2DE7A 2NVEA 2YIUC 5KLVE 2QJKC 1Z01A 3L73E 3VMHD 3AZCA 4NBAD 2XSHA 4NB9A 2BMQA 2DE6A 4NBDA 3C0DA 4HM0A 3GTSA 1RFSA 3L75E 2QJPC 4AAYB 2FYNC 1SQPE 2XR8A 3L71E 2DE5D 1SQVE 1SQQE 4NBGD 3L74E 4HM8A 1EG9A 1KYOE 4EMJB 3GL0A 2GBXA 4H0LD 2E4PA 2YVJB 3VMGA 4HM3A 4HJLA 3GKEA 4NBFA 1Q90C 1RIEA 3CXHE 2A06E 1SQBE 1NTME 2E74D 4OGQD 4QDCA 4HM5A 3L72E 2Q3WA 3N0QA 1O7HA 1NYKA 3GL2A 4PV1D 3GCFA 2E4QA 1WQLA 4NBED 2HMNA 3GZYA 3L70E 2BMOA 1BE3E 1VM9A 1ZRTE 2DE7D 3DQYA 1O7MA 1O7WA 2FYUE 4NB9D 1G8KB 1KB9E 3VCPA 5AEUA 4QUQA 2DE6D 2GBWA 4HKVA 4NBDD 3VCAA 2YFIA 4NB8A 2NUMA 1G8JB 2HMMA 2B1XA 1VF5D 2B24A 2HMLA 2D2CD 2I7FA 4PD4E 1WW9A 2JO6A 3GOBA 3GTEA 1BCCE 4NBFD 5HL4A 2CKFA 3VMHA 3TGUE 2ZYLA 4H44D 4HM7A 3CX5E 2NVGA 2HMKA 2XRXA 1UUVA 1UUWA 2E76D 1ULJA 1SJGA 3GZXA 4U3FE 4NBHA 1VCKA 1EZVE 3BCCE 2DE5A 1P84E 3CWBE 4NBBA 1FQTA 2NVFA 3GB4A 2NUKA 1NTKE 4QURA 3H1IE 4QUPA 3H1JE 2BCCE 5BOKA 4NBCA 4HM2A 3VMIA 4NB8D 3FOUA 5CXMA 3EQQA 1NU1E 4HM1A 4HM4A 1ULIA 3D89A 3VMGD 2JZAA 4QDFB 4QCKA 4AIVA 5AEWA 2YFJA 2HMJA 2QPZA 4P1CH 4NBAA 1O7GA 2NWFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NTZ E;  2QJY C;  4QDD A;  2BMR A;  4HM6 A;  4NBG A;  4NBH D;  2HMO A;  1SQX E;  4H13 D;  1Z03 A;  3H1K E;  4NBB D;  1L0N E;  1O7P A;  3GCE A;  3EN1 A;  3H1H E;  4QDF A;  1PP9 E;  2E75 D;  5KKZ C;  1JM1 A;  1PPJ E;  1L0L E;  2XSO A;  1Z02 A;  2YFL A;  4NBC D;  4P1B H;  3GKQ A;  3VMI D;  1O7N A;  2ZT9 D;  5KLI C;  1NDO A;  3H1L E;  4NBE A;  2IBZ E;  2DE7 A;  2NVE A;  2YIU C;  5KLV E;  2QJK C;  1Z01 A;  3L73 E;  3VMH D;  3AZC A;  4NBA D;  2XSH A;  4NB9 A;  2BMQ A;  2DE6 A;  4NBD A;  3C0D A;  4HM0 A;  3GTS A;  1RFS A;  3L75 E;  2QJP C;  4AAY B;  2FYN C;  1SQP E;  2XR8 A;  3L71 E;  2DE5 D;  1SQV E;  1SQQ E;  4NBG D;  3L74 E;  4HM8 A;  1EG9 A;  1KYO E;  4EMJ B;  3GL0 A;  2GBX A;  4H0L D;  2E4P A;  2YVJ B;  3VMG A;  4HM3 A;  4HJL A;  3GKE A;  4NBF A;  1Q90 C;  1RIE A;  3CXH E;  2A06 E;  1SQB E;  1NTM E;  2E74 D;  4OGQ D;  4QDC A;  4HM5 A;  3L72 E;  2Q3W A;  3N0Q A;  1O7H A;  1NYK A;  3GL2 A;  4PV1 D;  3GCF A;  2E4Q A;  1WQL A;  4NBE D;  2HMN A;  3GZY A;  3L70 E;  2BMO A;  1BE3 E;  1VM9 A;  1ZRT E;  2DE7 D;  3DQY A;  1O7M A;  1O7W A;  2FYU E;  4NB9 D;  1G8K B;  1KB9 E;  3VCP A;  5AEU A;  4QUQ A;  2DE6 D;  2GBW A;  4HKV A;  4NBD D;  3VCA A;  2YFI A;  4NB8 A;  2NUM A;  1G8J B;  2HMM A;  2B1X A;  1VF5 D;  2B24 A;  2HML A;  2D2C D;  2I7F A;  4PD4 E;  1WW9 A;  2JO6 A;  3GOB A;  3GTE A;  1BCC E;  4NBF D;  5HL4 A;  2CKF A;  3VMH A;  3TGU E;  2ZYL A;  4H44 D;  4HM7 A;  3CX5 E;  2NVG A;  2HMK A;  2XRX A;  1UUV A;  1UUW A;  2E76 D;  1ULJ A;  1SJG A;  3GZX A;  4U3F E;  4NBH A;  1VCK A;  1EZV E;  3BCC E;  2DE5 A;  1P84 E;  3CWB E;  4NBB A;  1FQT A;  2NVF A;  3GB4 A;  2NUK A;  1NTK E;  4QUR A;  3H1I E;  4QUP A;  3H1J E;  2BCC E;  5BOK A;  4NBC A;  4HM2 A;  3VMI A;  4NB8 D;  3FOU A;  5CXM A;  3EQQ A;  1NU1 E;  4HM1 A;  4HM4 A;  1ULI A;  3D89 A;  3VMG D;  2JZA A;  4QDF B;  4QCK A;  4AIV A;  5AEW A;  2YFJ A;  2HMJ A;  2QPZ A;  4P1C H;  4NBA A;  1O7G A;  2NWF A; 
#chains in the Genus database with same CATH topology
 1NTZ E;  2QJY C;  4QDD A;  2BMR A;  4HM6 A;  4NBG A;  4NBH D;  2HMO A;  1SQX E;  4H13 D;  1Z03 A;  3H1K E;  4NBB D;  1L0N E;  1O7P A;  3GCE A;  3EN1 A;  3H1H E;  4QDF A;  1PP9 E;  2E75 D;  5KKZ C;  1JM1 A;  1PPJ E;  1L0L E;  2XSO A;  1Z02 A;  2YFL A;  4NBC D;  4P1B H;  3GKQ A;  3VMI D;  1O7N A;  2ZT9 D;  5KLI C;  1NDO A;  3H1L E;  4NBE A;  2IBZ E;  2DE7 A;  2NVE A;  2YIU C;  5KLV E;  2QJK C;  1Z01 A;  3L73 E;  3VMH D;  3AZC A;  4NBA D;  2XSH A;  4NB9 A;  2BMQ A;  2DE6 A;  4NBD A;  3C0D A;  4HM0 A;  3GTS A;  1RFS A;  3L75 E;  2QJP C;  4AAY B;  2FYN C;  1SQP E;  2XR8 A;  3L71 E;  2DE5 D;  1SQV E;  1SQQ E;  4NBG D;  3L74 E;  4HM8 A;  1EG9 A;  1KYO E;  4EMJ B;  3GL0 A;  2GBX A;  4H0L D;  2E4P A;  2YVJ B;  3VMG A;  4HM3 A;  4HJL A;  3GKE A;  4NBF A;  1Q90 C;  1RIE A;  3CXH E;  2A06 E;  1SQB E;  1NTM E;  2E74 D;  4OGQ D;  4QDC A;  4HM5 A;  3L72 E;  2Q3W A;  3N0Q A;  1O7H A;  1NYK A;  3GL2 A;  4PV1 D;  3GCF A;  2E4Q A;  1WQL A;  4NBE D;  2HMN A;  3GZY A;  3L70 E;  2BMO A;  1BE3 E;  1VM9 A;  1ZRT E;  2DE7 D;  3DQY A;  1O7M A;  1O7W A;  2FYU E;  4NB9 D;  1G8K B;  1KB9 E;  3VCP A;  5AEU A;  4QUQ A;  2DE6 D;  2GBW A;  4HKV A;  4NBD D;  3VCA A;  2YFI A;  4NB8 A;  2NUM A;  1G8J B;  2HMM A;  2B1X A;  1VF5 D;  2B24 A;  2HML A;  2D2C D;  2I7F A;  4PD4 E;  1WW9 A;  2JO6 A;  3GOB A;  3GTE A;  1BCC E;  4NBF D;  5HL4 A;  2CKF A;  3VMH A;  3TGU E;  2ZYL A;  4H44 D;  4HM7 A;  3CX5 E;  2NVG A;  2HMK A;  2XRX A;  1UUV A;  1UUW A;  2E76 D;  1ULJ A;  1SJG A;  3GZX A;  4U3F E;  4NBH A;  1VCK A;  1EZV E;  3BCC E;  2DE5 A;  1P84 E;  3CWB E;  4NBB A;  1FQT A;  2NVF A;  3GB4 A;  2NUK A;  1NTK E;  4QUR A;  3H1I E;  4QUP A;  3H1J E;  2BCC E;  5BOK A;  4NBC A;  4HM2 A;  3VMI A;  4NB8 D;  3FOU A;  5CXM A;  3EQQ A;  1NU1 E;  4HM1 A;  4HM4 A;  1ULI A;  3D89 A;  3VMG D;  2JZA A;  4QDF B;  4QCK A;  4AIV A;  5AEW A;  2YFJ A;  2HMJ A;  2QPZ A;  4P1C H;  4NBA A;  1O7G A;  2NWF A; 
#chains in the Genus database with same CATH homology
 1NTZ E;  2QJY C;  4QDD A;  2BMR A;  4HM6 A;  4NBG A;  4NBH D;  2HMO A;  1SQX E;  4H13 D;  1Z03 A;  3H1K E;  4NBB D;  1L0N E;  1O7P A;  3GCE A;  3EN1 A;  3H1H E;  4QDF A;  1PP9 E;  2E75 D;  5KKZ C;  1JM1 A;  1PPJ E;  1L0L E;  2XSO A;  1Z02 A;  2YFL A;  4NBC D;  4P1B H;  3GKQ A;  3VMI D;  1O7N A;  2ZT9 D;  5KLI C;  1NDO A;  3H1L E;  4NBE A;  2IBZ E;  2DE7 A;  2NVE A;  2YIU C;  5KLV E;  2QJK C;  1Z01 A;  3L73 E;  3VMH D;  3AZC A;  4NBA D;  2XSH A;  4NB9 A;  2BMQ A;  2DE6 A;  4NBD A;  3C0D A;  4HM0 A;  3GTS A;  1RFS A;  3L75 E;  2QJP C;  4AAY B;  2FYN C;  1SQP E;  2XR8 A;  3L71 E;  2DE5 D;  1SQV E;  1SQQ E;  4NBG D;  3L74 E;  4HM8 A;  1EG9 A;  1KYO E;  4EMJ B;  3GL0 A;  2GBX A;  4H0L D;  2E4P A;  2YVJ B;  3VMG A;  4HM3 A;  4HJL A;  3GKE A;  4NBF A;  1Q90 C;  1RIE A;  3CXH E;  2A06 E;  1SQB E;  1NTM E;  2E74 D;  4OGQ D;  4QDC A;  4HM5 A;  3L72 E;  2Q3W A;  3N0Q A;  1O7H A;  1NYK A;  3GL2 A;  4PV1 D;  3GCF A;  2E4Q A;  1WQL A;  4NBE D;  2HMN A;  3GZY A;  3L70 E;  2BMO A;  1BE3 E;  1VM9 A;  1ZRT E;  2DE7 D;  3DQY A;  1O7M A;  1O7W A;  2FYU E;  4NB9 D;  1G8K B;  1KB9 E;  3VCP A;  5AEU A;  4QUQ A;  2DE6 D;  2GBW A;  4HKV A;  4NBD D;  3VCA A;  2YFI A;  4NB8 A;  2NUM A;  1G8J B;  2HMM A;  2B1X A;  1VF5 D;  2B24 A;  2HML A;  2D2C D;  2I7F A;  4PD4 E;  1WW9 A;  2JO6 A;  3GOB A;  3GTE A;  1BCC E;  4NBF D;  5HL4 A;  2CKF A;  3VMH A;  3TGU E;  2ZYL A;  4H44 D;  4HM7 A;  3CX5 E;  2NVG A;  2HMK A;  2XRX A;  1UUV A;  1UUW A;  2E76 D;  1ULJ A;  1SJG A;  3GZX A;  4U3F E;  4NBH A;  1VCK A;  1EZV E;  3BCC E;  2DE5 A;  1P84 E;  3CWB E;  4NBB A;  1FQT A;  2NVF A;  3GB4 A;  2NUK A;  1NTK E;  4QUR A;  3H1I E;  4QUP A;  3H1J E;  2BCC E;  5BOK A;  4NBC A;  4HM2 A;  3VMI A;  4NB8 D;  3FOU A;  5CXM A;  3EQQ A;  1NU1 E;  4HM1 A;  4HM4 A;  1ULI A;  3D89 A;  3VMG D;  2JZA A;  4QDF B;  4QCK A;  4AIV A;  5AEW A;  2YFJ A;  2HMJ A;  2QPZ A;  4P1C H;  4NBA A;  1O7G A;  2NWF A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...