2YFRA

Crystal structure of inulosucrase from lactobacillus johnsonii ncc533
Total Genus 183
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
183
sequence length
533
structure length
533
Chain Sequence
b'KAELKGQVKDIVEESGVDTSKLTNDQINELNKINFSKEAKSGTQLTYNDFKKIAKTLIEQDARYAIPFFNASKIKNMPAAKTLDAQSGKVEDLEIWDSWPVQDAKTGYVSNWNGYQLVIGMMGVPNVNDNHIYLLYNKYGDNDFNHWKNAGPIFGLGTPVIQQWSGSATLNKDGSIQLYYTKVDTSDNNTNHQKLASATVYLNLEKDQDKISIAHVDNDHIVFEGDGYHYQTYDQWKETNKGADNIAMRDAHVIDDDNGNRYLVFEASTGTENYQGDDQIYQWLNYGGTNKDNLGDFFQILSNSDIKDRAKWSNAAIGIIKLNDDVKNPSVAKVYSPLISAPMVSDEIERPDVVKLGNKYYLFAATRLNRGSNDDAWMATNKAVGDNVAMIGYVSDNLTHGYVPLNESGVVLTASVPANWRTATYSYYAVPVEGRDDQLLITSYITNRGEVAGKGMHATWAPSFLLQINPDNTTTVLAKMTNQGDWIWDDSSENPDMMGVLEKDAPNSAALPGEWGKPVDWDLIGGYNLKPHQ'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords LEVANSUCRASE
publication title Crystal Structure of Inulosucrase from Lactobacillus: Insights Into the Substrate Specificity and Product Specificity of Gh68 Fructansucrases.
pubmed doi rcsb
source organism Lactobacillus johnsonii
molecule tags Transferase
total genus 183
structure length 533
sequence length 533
ec nomenclature ec 2.4.1.9: Inulosucrase.
pdb deposition date 2011-04-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02435 Glyco_hydro_68 Levansucrase/Invertase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.115.10.20 Mainly Beta 5 Propeller Tachylectin-2; Chain A Glycosyl hydrolase domain; family 43 2yfrA01
3KF5A 3C7OA 4QQSA 2ADEA 2AEYA 5A7VA 1Y9GA 3RWKX 4AK6A 2B4WA 5JOYA 4KC8A 3QZ4A 3WPYA 3C7EA 5C0PA 4N2ZA 4N4BA 5FK8A 5B6TA 1UYPA 4KCAA 1YI7A 3WASA 4AK5A 3BYLA 3ZXKA 3LV4A 3OM6A 3ZXJA 3LDKA 3AKFA 5FMBA 1W2TA 2OXBA 5A7VB 5GLLA 1Y4WA 3UGHA 3R67A 2QQWA 3LIGA 3LDRA 3C7GA 3VT2A 3VSFA 5GLMA 4EQVA 5FLWA 4COTA 3U14A 4FFGA 3WATA 3AKHA 3VSZA 4ONZA 4O8NA 3UGFA 5AYEA 2X8FA 1ST8A 2EXKA 1OYGA 4NOVA 3QEEA 3WPZA 3QC2A 3OM5A 5JOZA 2XQRA 3BYKA 3ZXLA 5AYCA 3LFIA 4U6BA 5ANNA 1W18A 2YFRA 3KF3A 4O8PA 3AKIA 5FKCA 3KSTA 2VDTA 3R4ZA 4UDGA 4AK7A 3WPUA 2AC1A 4N2RA 3U75A 5GLKA 3OM4A 3OM7A 5GLPA 3UGGA 2QQVA 5FMCA 3OM2A 1WL7A 4KCBA 2QQUA 4O8OA 5JOWA 3P2NA 3LEMA 2ADDA 5FIXA 5A8CA 3C7HA 5GLNA 5GLQA 3BYNA 3WMZA 4N1IA 1GYHA 3D60A 3LF7A 1PT2A 4MLGA 3VSSA 5AY9A 3CU9A 3D5ZA 4PVAA 3VSRA 3TAWA 4KMIA 5FMDA 4UDKA 1Y9MA 2X8SA 3C7FA 5JOXA 4FFFA 3QEDA 2EXIA 3WN1A 1YIFA 1VKDA 5B6SA 3NQHA 3PIJA 5FKBA 4UDKE 3WMYA 4FFIA 3D61A 2YFTA 4KC7A 4U6DA 2X8TA 3LIHA 4FFHA 5A8DA 1Y7BA 5GLRA 4D47A 4UDIA 1UV4A 5FK7A 3WN0A 5AYDA 3WN2A 4UDJA 2EXJA 3WPVA 1GYEB 4PVIA 3WAUA 2YFSA 3BYJA 2EXHA 5GLOA 3C2UA 1YRZA 3VT0A 3SC7X 3R4YA 3K1UA 3VT1A 3QEFA 2AEZA 1GYDB 3D5YA 3PIGA 3AKGA
chains in the Genus database with same CATH superfamily
3KF5A 3C7OA 4QQSA 2ADEA 2AEYA 5A7VA 1Y9GA 3RWKX 4AK6A 2B4WA 5JOYA 4KC8A 3QZ4A 3WPYA 3C7EA 5C0PA 4N2ZA 4N4BA 5FK8A 5B6TA 1UYPA 4KCAA 1YI7A 3WASA 4AK5A 3BYLA 3ZXKA 3LV4A 3OM6A 3ZXJA 3LDKA 3AKFA 5FMBA 1W2TA 2OXBA 5A7VB 5GLLA 1Y4WA 1TL2A 3UGHA 3R67A 2QQWA 3LIGA 3LDRA 3C7GA 3VT2A 3VSFA 5GLMA 4EQVA 5FLWA 4COTA 3U14A 4FFGA 3WATA 3AKHA 3VSZA 4ONZA 4O8NA 3UGFA 5AYEA 2X8FA 1ST8A 2EXKA 1OYGA 4NOVA 3QEEA 3WPZA 3QC2A 3OM5A 5JOZA 2XQRA 3BYKA 3ZXLA 5AYCA 3LFIA 4U6BA 5ANNA 1W18A 2YFRA 3KF3A 4O8PA 3AKIA 5FKCA 3KSTA 2VDTA 3R4ZA 4UDGA 4AK7A 3WPUA 2AC1A 4N2RA 3U75A 5GLKA 3OM4A 3OM7A 5GLPA 3UGGA 2QQVA 5FMCA 1WL7A 3OM2A 4KCBA 2QQUA 4O8OA 5JOWA 3P2NA 3LEMA 2ADDA 5FIXA 5A8CA 3C7HA 5GLNA 5GLQA 3BYNA 3WMZA 4N1IA 1GYHA 3D60A 3LF7A 1PT2A 4MLGA 3VSSA 5AY9A 3CU9A 3D5ZA 4PVAA 3VSRA 3TAWA 4KMIA 5FMDA 4UDKA 1Y9MA 2X8SA 3C7FA 5JOXA 4FFFA 5C2MA 3QEDA 2EXIA 3WN1A 1YIFA 1VKDA 5B6SA 3NQHA 3PIJA 5FKBA 4UDKE 3WMYA 4FFIA 3D61A 2YFTA 4KC7A 4U6DA 2X8TA 3LIHA 4FFHA 5A8DA 1Y7BA 5GLRA 4D47A 4UDIA 1UV4A 5FK7A 3WN0A 5AYDA 3WN2A 4UDJA 2EXJA 3WPVA 1GYEB 4PVIA 3WAUA 2YFSA 3BYJA 2EXHA 5GLOA 3C2UA 1YRZA 3VT0A 3SC7X 3R4YA 3K1UA 3VT1A 3QEFA 2AEZA 1GYDB 3D5YA 3PIGA 3AKGA
chains in the Genus database with same CATH topology
3KF5A 3C7OA 4QQSA 2ADEA 2AEYA 5A7VA 1Y9GA 3RWKX 4AK6A 2B4WA 5JOYA 4KC8A 3QZ4A 3WPYA 3C7EA 5C0PA 4N2ZA 4N4BA 5FK8A 5B6TA 1UYPA 4KCAA 1YI7A 3WASA 4AK5A 3BYLA 3ZXKA 3LV4A 3OM6A 3ZXJA 3LDKA 3AKFA 5FMBA 1W2TA 2OXBA 5A7VB 5GLLA 1Y4WA 3UGHA 3R67A 2QQWA 3LIGA 3LDRA 3C7GA 3VT2A 3VSFA 5GLMA 4EQVA 5FLWA 4COTA 3U14A 4FFGA 3WATA 3AKHA 3VSZA 4ONZA 4O8NA 3UGFA 5AYEA 2X8FA 1ST8A 2EXKA 1OYGA 4NOVA 3QEEA 3WPZA 3QC2A 3OM5A 5JOZA 2XQRA 3BYKA 3ZXLA 5AYCA 3LFIA 4U6BA 5ANNA 1W18A 2YFRA 3KF3A 4O8PA 3AKIA 5FKCA 3KSTA 2VDTA 3R4ZA 4UDGA 4AK7A 3WPUA 2AC1A 4N2RA 3U75A 5GLKA 3OM4A 3OM7A 5GLPA 3UGGA 2QQVA 5FMCA 3OM2A 1WL7A 4KCBA 2QQUA 4O8OA 5JOWA 3P2NA 3LEMA 2ADDA 5FIXA 5A8CA 3C7HA 5GLNA 5GLQA 3BYNA 3WMZA 4N1IA 1GYHA 3D60A 3LF7A 1PT2A 4MLGA 3VSSA 5AY9A 3CU9A 3D5ZA 4PVAA 3VSRA 3TAWA 4KMIA 5FMDA 4UDKA 1Y9MA 2X8SA 3C7FA 5JOXA 4FFFA 3QEDA 2EXIA 3WN1A 1YIFA 1VKDA 5B6SA 3NQHA 3PIJA 5FKBA 4UDKE 3WMYA 4FFIA 3D61A 2YFTA 4KC7A 4U6DA 2X8TA 3LIHA 4FFHA 5A8DA 1Y7BA 5GLRA 4D47A 4UDIA 1UV4A 5FK7A 3WN0A 5AYDA 3WN2A 4UDJA 2EXJA 3WPVA 1GYEB 4PVIA 3WAUA 2YFSA 3BYJA 2EXHA 5GLOA 3C2UA 1YRZA 3VT0A 3SC7X 3R4YA 3K1UA 3VT1A 3QEFA 2AEZA 1GYDB 3D5YA 3PIGA 3AKGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KF5 A;  3C7O A;  4QQS A;  2ADE A;  2AEY A;  5A7V A;  1Y9G A;  3RWK X;  4AK6 A;  2B4W A;  5JOY A;  4KC8 A;  3QZ4 A;  3WPY A;  3C7E A;  5C0P A;  4N2Z A;  4N4B A;  5FK8 A;  5B6T A;  1UYP A;  4KCA A;  1YI7 A;  3WAS A;  4AK5 A;  3BYL A;  3ZXK A;  3LV4 A;  3OM6 A;  3ZXJ A;  3LDK A;  3AKF A;  5FMB A;  1W2T A;  2OXB A;  5A7V B;  5GLL A;  1Y4W A;  3UGH A;  3R67 A;  2QQW A;  3LIG A;  3LDR A;  3C7G A;  3VT2 A;  3VSF A;  5GLM A;  4EQV A;  5FLW A;  4COT A;  3U14 A;  4FFG A;  3WAT A;  3AKH A;  3VSZ A;  4ONZ A;  4O8N A;  3UGF A;  5AYE A;  2X8F A;  1ST8 A;  2EXK A;  1OYG A;  4NOV A;  3QEE A;  3WPZ A;  3QC2 A;  3OM5 A;  5JOZ A;  2XQR A;  3BYK A;  3ZXL A;  5AYC A;  3LFI A;  4U6B A;  5ANN A;  1W18 A;  2YFR A;  3KF3 A;  4O8P A;  3AKI A;  5FKC A;  3KST A;  2VDT A;  3R4Z A;  4UDG A;  4AK7 A;  3WPU A;  2AC1 A;  4N2R A;  3U75 A;  5GLK A;  3OM4 A;  3OM7 A;  5GLP A;  3UGG A;  2QQV A;  5FMC A;  3OM2 A;  1WL7 A;  4KCB A;  2QQU A;  4O8O A;  5JOW A;  3P2N A;  3LEM A;  2ADD A;  5FIX A;  5A8C A;  3C7H A;  5GLN A;  5GLQ A;  3BYN A;  3WMZ A;  4N1I A;  1GYH A;  3D60 A;  3LF7 A;  1PT2 A;  4MLG A;  3VSS A;  5AY9 A;  3CU9 A;  3D5Z A;  4PVA A;  3VSR A;  3TAW A;  4KMI A;  5FMD A;  4UDK A;  1Y9M A;  2X8S A;  3C7F A;  5JOX A;  4FFF A;  3QED A;  2EXI A;  3WN1 A;  1YIF A;  1VKD A;  5B6S A;  3NQH A;  3PIJ A;  5FKB A;  4UDK E;  3WMY A;  4FFI A;  3D61 A;  2YFT A;  4KC7 A;  4U6D A;  2X8T A;  3LIH A;  4FFH A;  5A8D A;  1Y7B A;  5GLR A;  4D47 A;  4UDI A;  1UV4 A;  5FK7 A;  3WN0 A;  5AYD A;  3WN2 A;  4UDJ A;  2EXJ A;  3WPV A;  1GYE B;  4PVI A;  3WAU A;  2YFS A;  3BYJ A;  2EXH A;  5GLO A;  3C2U A;  1YRZ A;  3VT0 A;  3SC7 X;  3R4Y A;  3K1U A;  3VT1 A;  3QEF A;  2AEZ A;  1GYD B;  3D5Y A;  3PIG A;  3AKG A; 
#chains in the Genus database with same CATH topology
 3KF5 A;  3C7O A;  4QQS A;  2ADE A;  2AEY A;  5A7V A;  1Y9G A;  3RWK X;  4AK6 A;  2B4W A;  5JOY A;  4KC8 A;  3QZ4 A;  3WPY A;  3C7E A;  5C0P A;  4N2Z A;  4N4B A;  5FK8 A;  5B6T A;  1UYP A;  4KCA A;  1YI7 A;  3WAS A;  4AK5 A;  3BYL A;  3ZXK A;  3LV4 A;  3OM6 A;  3ZXJ A;  3LDK A;  3AKF A;  5FMB A;  1W2T A;  2OXB A;  5A7V B;  5GLL A;  1Y4W A;  1TL2 A;  3UGH A;  3R67 A;  2QQW A;  3LIG A;  3LDR A;  3C7G A;  3VT2 A;  3VSF A;  5GLM A;  4EQV A;  5FLW A;  4COT A;  3U14 A;  4FFG A;  3WAT A;  3AKH A;  3VSZ A;  4ONZ A;  4O8N A;  3UGF A;  5AYE A;  2X8F A;  1ST8 A;  2EXK A;  1OYG A;  4NOV A;  3QEE A;  3WPZ A;  3QC2 A;  3OM5 A;  5JOZ A;  2XQR A;  3BYK A;  3ZXL A;  5AYC A;  3LFI A;  4U6B A;  5ANN A;  1W18 A;  2YFR A;  3KF3 A;  4O8P A;  3AKI A;  5FKC A;  3KST A;  2VDT A;  3R4Z A;  4UDG A;  4AK7 A;  3WPU A;  2AC1 A;  4N2R A;  3U75 A;  5GLK A;  3OM4 A;  3OM7 A;  5GLP A;  3UGG A;  2QQV A;  5FMC A;  1WL7 A;  3OM2 A;  4KCB A;  2QQU A;  4O8O A;  5JOW A;  3P2N A;  3LEM A;  2ADD A;  5FIX A;  5A8C A;  3C7H A;  5GLN A;  5GLQ A;  3BYN A;  3WMZ A;  4N1I A;  1GYH A;  3D60 A;  3LF7 A;  1PT2 A;  4MLG A;  3VSS A;  5AY9 A;  3CU9 A;  3D5Z A;  4PVA A;  3VSR A;  3TAW A;  4KMI A;  5FMD A;  4UDK A;  1Y9M A;  2X8S A;  3C7F A;  5JOX A;  4FFF A;  5C2M A;  3QED A;  2EXI A;  3WN1 A;  1YIF A;  1VKD A;  5B6S A;  3NQH A;  3PIJ A;  5FKB A;  4UDK E;  3WMY A;  4FFI A;  3D61 A;  2YFT A;  4KC7 A;  4U6D A;  2X8T A;  3LIH A;  4FFH A;  5A8D A;  1Y7B A;  5GLR A;  4D47 A;  4UDI A;  1UV4 A;  5FK7 A;  3WN0 A;  5AYD A;  3WN2 A;  4UDJ A;  2EXJ A;  3WPV A;  1GYE B;  4PVI A;  3WAU A;  2YFS A;  3BYJ A;  2EXH A;  5GLO A;  3C2U A;  1YRZ A;  3VT0 A;  3SC7 X;  3R4Y A;  3K1U A;  3VT1 A;  3QEF A;  2AEZ A;  1GYD B;  3D5Y A;  3PIG A;  3AKG A; 
#chains in the Genus database with same CATH homology
 3KF5 A;  3C7O A;  4QQS A;  2ADE A;  2AEY A;  5A7V A;  1Y9G A;  3RWK X;  4AK6 A;  2B4W A;  5JOY A;  4KC8 A;  3QZ4 A;  3WPY A;  3C7E A;  5C0P A;  4N2Z A;  4N4B A;  5FK8 A;  5B6T A;  1UYP A;  4KCA A;  1YI7 A;  3WAS A;  4AK5 A;  3BYL A;  3ZXK A;  3LV4 A;  3OM6 A;  3ZXJ A;  3LDK A;  3AKF A;  5FMB A;  1W2T A;  2OXB A;  5A7V B;  5GLL A;  1Y4W A;  3UGH A;  3R67 A;  2QQW A;  3LIG A;  3LDR A;  3C7G A;  3VT2 A;  3VSF A;  5GLM A;  4EQV A;  5FLW A;  4COT A;  3U14 A;  4FFG A;  3WAT A;  3AKH A;  3VSZ A;  4ONZ A;  4O8N A;  3UGF A;  5AYE A;  2X8F A;  1ST8 A;  2EXK A;  1OYG A;  4NOV A;  3QEE A;  3WPZ A;  3QC2 A;  3OM5 A;  5JOZ A;  2XQR A;  3BYK A;  3ZXL A;  5AYC A;  3LFI A;  4U6B A;  5ANN A;  1W18 A;  2YFR A;  3KF3 A;  4O8P A;  3AKI A;  5FKC A;  3KST A;  2VDT A;  3R4Z A;  4UDG A;  4AK7 A;  3WPU A;  2AC1 A;  4N2R A;  3U75 A;  5GLK A;  3OM4 A;  3OM7 A;  5GLP A;  3UGG A;  2QQV A;  5FMC A;  3OM2 A;  1WL7 A;  4KCB A;  2QQU A;  4O8O A;  5JOW A;  3P2N A;  3LEM A;  2ADD A;  5FIX A;  5A8C A;  3C7H A;  5GLN A;  5GLQ A;  3BYN A;  3WMZ A;  4N1I A;  1GYH A;  3D60 A;  3LF7 A;  1PT2 A;  4MLG A;  3VSS A;  5AY9 A;  3CU9 A;  3D5Z A;  4PVA A;  3VSR A;  3TAW A;  4KMI A;  5FMD A;  4UDK A;  1Y9M A;  2X8S A;  3C7F A;  5JOX A;  4FFF A;  3QED A;  2EXI A;  3WN1 A;  1YIF A;  1VKD A;  5B6S A;  3NQH A;  3PIJ A;  5FKB A;  4UDK E;  3WMY A;  4FFI A;  3D61 A;  2YFT A;  4KC7 A;  4U6D A;  2X8T A;  3LIH A;  4FFH A;  5A8D A;  1Y7B A;  5GLR A;  4D47 A;  4UDI A;  1UV4 A;  5FK7 A;  3WN0 A;  5AYD A;  3WN2 A;  4UDJ A;  2EXJ A;  3WPV A;  1GYE B;  4PVI A;  3WAU A;  2YFS A;  3BYJ A;  2EXH A;  5GLO A;  3C2U A;  1YRZ A;  3VT0 A;  3SC7 X;  3R4Y A;  3K1U A;  3VT1 A;  3QEF A;  2AEZ A;  1GYD B;  3D5Y A;  3PIG A;  3AKG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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