2YGSA

Card domain from apaf-1
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
92
structure length
92
Chain Sequence
MDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLAALLHDGIP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Apoptosis
molecule keywords APOPTOTIC PROTEASE ACTIVATING FACTOR 1
publication title Structural basis of procaspase-9 recruitment by the apoptotic protease-activating factor 1.
pubmed doi rcsb
source organism Homo sapiens
total genus 32
structure length 92
sequence length 92
ec nomenclature
pdb deposition date 1999-05-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00619 CARD Caspase recruitment domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 2ygsA00
3EZQA 4D8OA 3LQRA 4E9MA 2DBHA 1Z6TA 3EZQB 4IZAB 4JUPA 1DGNA 2A9IA 2NSNA 1CWWA 2L9MA 1FADA 2O71A 3KATA 2YGSA 2YU0A 2MS8A 1D2ZA 3YGSC 4P4HI 4DWNA 4NQKA 2B1WA 3YGSP 2N80A 2D96A 1D2ZB 2MPCA 1PN5A 2MB9A 2L6AA 3QF2A 2DBFA 4O9FA 3T6PA 4O7QA 1WH4A 4M9ZA 4N1KA 4O6XA 3CL3A 2LWDA 2OF5A 2N83A 2KN6A 2LS7A 3MOPG 1C15A 2F1SA 1UCPA 1YGOA 1DDFA 2A5YB 2HM2Q 1E3YA 3MOPK 2N1FA 4P4HA 4M9SA 2N00A 4JQWA 2MN4A 3J63A 2G7RA 1CY5A 2DO9A 2YQFA 1E41A 2KM6A 4A2QA 4UZ0A 4F42A 2P1HA 4O9LA 3CRDA 4EWIA 2MS7A 4LWDA 4IZ5E 4FH0A 4ZBWA 1ICHA 2M5VA 2NZ7A 1N3KA 2DBGA 2LWEA 4IZ7B 4QOBA 1WXPA 2YVIA 3MOPA 2NAQA 1NGRA 4N1LA 4RHWE 4N1JA 2N97A 1A1ZA 2IB1A 4A2WA 3J6JA 2DBDA 2BBZA 4M9XA 4F44A 2OF5H 2GF5A 4I16A 4RHWA 1WMGA 2VGQA 3LQQA 2BBRA 2N7ZA 1A1WA
chains in the Genus database with same CATH superfamily
3EZQA 4D8OA 3LQRA 4E9MA 2DBHA 1Z6TA 3EZQB 4IZAB 4JUPA 1DGNA 2A9IA 2NSNA 1CWWA 2L9MA 1FADA 2O71A 3KATA 2YGSA 2YU0A 2MS8A 1D2ZA 3YGSC 4P4HI 4DWNA 4NQKA 2MJMA 2B1WA 3YGSP 2N80A 2D96A 1D2ZB 2MPCA 1PN5A 2MB9A 2L6AA 3QF2A 2DBFA 4O9FA 3T6PA 4O7QA 1WH4A 4M9ZA 4N1KA 4O6XA 3CL3A 2LWDA 2OF5A 2N83A 2KN6A 2LS7A 3MOPG 1C15A 2F1SA 1UCPA 1YGOA 1DDFA 2A5YB 2XV9A 2HM2Q 1E3YA 3MOPK 2N1FA 4P4HA 4M9SA 2N00A 4JQWA 2MN4A 3J63A 2G7RA 1CY5A 2DO9A 2YQFA 1E41A 2KM6A 4A2QA 4UZ0A 4F42A 2P1HA 4O9LA 3CRDA 4EWIA 2MS7A 4LWDA 4IZ5E 4FH0A 4ZBWA 1ICHA 2M5VA 2NZ7A 1N3KA 2DBGA 2LWEA 4IZ7B 4QOBA 1WXPA 2YVIA 3MOPA 2NAQA 1NGRA 4N1LA 4RHWE 4N1JA 2N97A 1A1ZA 2IB1A 4A2WA 3J6JA 2DBDA 2BBZA 4M9XA 4F44A 2OF5H 2GF5A 4I16A 4RHWA 1WMGA 2VGQA 3LQQA 2BBRA 2N7ZA 1A1WA
chains in the Genus database with same CATH topology
3EZQA 4D8OA 3LQRA 4E9MA 2DBHA 1Z6TA 3EZQB 4IZAB 4JUPA 1DGNA 2A9IA 2NSNA 1CWWA 2L9MA 1FADA 2O71A 3KATA 2YGSA 2YU0A 2MS8A 1D2ZA 3YGSC 4P4HI 4DWNA 4NQKA 2MJMA 2B1WA 3YGSP 2N80A 2D96A 1D2ZB 2MPCA 1PN5A 2MB9A 2L6AA 3QF2A 2DBFA 4O9FA 3T6PA 4O7QA 1WH4A 4M9ZA 4N1KA 4O6XA 3CL3A 2LWDA 2OF5A 2N83A 2KN6A 2LS7A 3MOPG 1C15A 2F1SA 1UCPA 1YGOA 1DDFA 2A5YB 2XV9A 2HM2Q 1E3YA 3MOPK 2N1FA 4P4HA 4M9SA 2N00A 4JQWA 2MN4A 3J63A 2G7RA 1CY5A 2DO9A 2YQFA 1E41A 2KM6A 4A2QA 4UZ0A 4F42A 2P1HA 4O9LA 3CRDA 4EWIA 2MS7A 4LWDA 4IZ5E 4FH0A 4ZBWA 1ICHA 2M5VA 2NZ7A 1N3KA 2DBGA 2LWEA 4IZ7B 4QOBA 1WXPA 2YVIA 3MOPA 2NAQA 1NGRA 4N1LA 4RHWE 4N1JA 2N97A 1A1ZA 2IB1A 4A2WA 3J6JA 2DBDA 2BBZA 4M9XA 4F44A 2OF5H 2GF5A 4I16A 4RHWA 1WMGA 2VGQA 3LQQA 2BBRA 2N7ZA 1A1WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EZQ A;  4D8O A;  3LQR A;  4E9M A;  2DBH A;  1Z6T A;  3EZQ B;  4IZA B;  4JUP A;  1DGN A;  2A9I A;  2NSN A;  1CWW A;  2L9M A;  1FAD A;  2O71 A;  3KAT A;  2YGS A;  2YU0 A;  2MS8 A;  1D2Z A;  3YGS C;  4P4H I;  4DWN A;  4NQK A;  2B1W A;  3YGS P;  2N80 A;  2D96 A;  1D2Z B;  2MPC A;  1PN5 A;  2MB9 A;  2L6A A;  3QF2 A;  2DBF A;  4O9F A;  3T6P A;  4O7Q A;  1WH4 A;  4M9Z A;  4N1K A;  4O6X A;  3CL3 A;  2LWD A;  2OF5 A;  2N83 A;  2KN6 A;  2LS7 A;  3MOP G;  1C15 A;  2F1S A;  1UCP A;  1YGO A;  1DDF A;  2A5Y B;  2HM2 Q;  1E3Y A;  3MOP K;  2N1F A;  4P4H A;  4M9S A;  2N00 A;  4JQW A;  2MN4 A;  3J63 A;  2G7R A;  1CY5 A;  2DO9 A;  2YQF A;  1E41 A;  2KM6 A;  4A2Q A;  4UZ0 A;  4F42 A;  2P1H A;  4O9L A;  3CRD A;  4EWI A;  2MS7 A;  4LWD A;  4IZ5 E;  4FH0 A;  4ZBW A;  1ICH A;  2M5V A;  2NZ7 A;  1N3K A;  2DBG A;  2LWE A;  4IZ7 B;  4QOB A;  1WXP A;  2YVI A;  3MOP A;  2NAQ A;  1NGR A;  4N1L A;  4RHW E;  4N1J A;  2N97 A;  1A1Z A;  2IB1 A;  4A2W A;  3J6J A;  2DBD A;  2BBZ A;  4M9X A;  4F44 A;  2OF5 H;  2GF5 A;  4I16 A;  4RHW A;  1WMG A;  2VGQ A;  3LQQ A;  2BBR A;  2N7Z A;  1A1W A; 
#chains in the Genus database with same CATH topology
 3EZQ A;  4D8O A;  3LQR A;  4E9M A;  2DBH A;  1Z6T A;  3EZQ B;  4IZA B;  4JUP A;  1DGN A;  2A9I A;  2NSN A;  1CWW A;  2L9M A;  1FAD A;  2O71 A;  3KAT A;  2YGS A;  2YU0 A;  2MS8 A;  1D2Z A;  3YGS C;  4P4H I;  4DWN A;  4NQK A;  2MJM A;  2B1W A;  3YGS P;  2N80 A;  2D96 A;  1D2Z B;  2MPC A;  1PN5 A;  2MB9 A;  2L6A A;  3QF2 A;  2DBF A;  4O9F A;  3T6P A;  4O7Q A;  1WH4 A;  4M9Z A;  4N1K A;  4O6X A;  3CL3 A;  2LWD A;  2OF5 A;  2N83 A;  2KN6 A;  2LS7 A;  3MOP G;  1C15 A;  2F1S A;  1UCP A;  1YGO A;  1DDF A;  2A5Y B;  2XV9 A;  2HM2 Q;  1E3Y A;  3MOP K;  2N1F A;  4P4H A;  4M9S A;  2N00 A;  4JQW A;  2MN4 A;  3J63 A;  2G7R A;  1CY5 A;  2DO9 A;  2YQF A;  1E41 A;  2KM6 A;  4A2Q A;  4UZ0 A;  4F42 A;  2P1H A;  4O9L A;  3CRD A;  4EWI A;  2MS7 A;  4LWD A;  4IZ5 E;  4FH0 A;  4ZBW A;  1ICH A;  2M5V A;  2NZ7 A;  1N3K A;  2DBG A;  2LWE A;  4IZ7 B;  4QOB A;  1WXP A;  2YVI A;  3MOP A;  2NAQ A;  1NGR A;  4N1L A;  4RHW E;  4N1J A;  2N97 A;  1A1Z A;  2IB1 A;  4A2W A;  3J6J A;  2DBD A;  2BBZ A;  4M9X A;  4F44 A;  2OF5 H;  2GF5 A;  4I16 A;  4RHW A;  1WMG A;  2VGQ A;  3LQQ A;  2BBR A;  2N7Z A;  1A1W A; 
#chains in the Genus database with same CATH homology
 3EZQ A;  4D8O A;  3LQR A;  4E9M A;  2DBH A;  1Z6T A;  3EZQ B;  4IZA B;  4JUP A;  1DGN A;  2A9I A;  2NSN A;  1CWW A;  2L9M A;  1FAD A;  2O71 A;  3KAT A;  2YGS A;  2YU0 A;  2MS8 A;  1D2Z A;  3YGS C;  4P4H I;  4DWN A;  4NQK A;  2MJM A;  2B1W A;  3YGS P;  2N80 A;  2D96 A;  1D2Z B;  2MPC A;  1PN5 A;  2MB9 A;  2L6A A;  3QF2 A;  2DBF A;  4O9F A;  3T6P A;  4O7Q A;  1WH4 A;  4M9Z A;  4N1K A;  4O6X A;  3CL3 A;  2LWD A;  2OF5 A;  2N83 A;  2KN6 A;  2LS7 A;  3MOP G;  1C15 A;  2F1S A;  1UCP A;  1YGO A;  1DDF A;  2A5Y B;  2XV9 A;  2HM2 Q;  1E3Y A;  3MOP K;  2N1F A;  4P4H A;  4M9S A;  2N00 A;  4JQW A;  2MN4 A;  3J63 A;  2G7R A;  1CY5 A;  2DO9 A;  2YQF A;  1E41 A;  2KM6 A;  4A2Q A;  4UZ0 A;  4F42 A;  2P1H A;  4O9L A;  3CRD A;  4EWI A;  2MS7 A;  4LWD A;  4IZ5 E;  4FH0 A;  4ZBW A;  1ICH A;  2M5V A;  2NZ7 A;  1N3K A;  2DBG A;  2LWE A;  4IZ7 B;  4QOB A;  1WXP A;  2YVI A;  3MOP A;  2NAQ A;  1NGR A;  4N1L A;  4RHW E;  4N1J A;  2N97 A;  1A1Z A;  2IB1 A;  4A2W A;  3J6J A;  2DBD A;  2BBZ A;  4M9X A;  4F44 A;  2OF5 H;  2GF5 A;  4I16 A;  4RHW A;  1WMG A;  2VGQ A;  3LQQ A;  2BBR A;  2N7Z A;  1A1W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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