2YIOA

Crystal structure of parasite sarcocystis muris microneme protein sml- 2 in complex with 1-thio-beta-d-galactose (spacegroup c2221)
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
128
structure length
128
Chain Sequence
LDVSCFAHDKNIGSRTEQLSVVHVASAQDCMKECQALPTCSHFTYNKNSKKCHLKAGAPEFYTYTGDMTGPRSCEHNCSDACWMDGNNPLAVWDYSGQPPALCWAACMGTPGCDLYTFQGMTCKLYSQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
molecule keywords MICRONEME ANTIGEN L2
publication title Pan-Modular Structure of Microneme Protein Sml-2 from Parasite Sarcocystis Muris at 1.95 A Resolution and its Complex with 1-Thio-Beta-D-Galactose.
pubmed doi rcsb
total genus 34
structure length 128
sequence length 128
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-05-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00024 PAN_1 PAN domain
A PF14295 PAN_4 PAN domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.180 Alpha Beta 2-Layer Sandwich Defensin A-like Defensin A-like 2yioA02
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 2yioA01
1NK1A 3MKPA 4R19A 1BHTA 4IUAA 5CT2A 1YXEA 2K13X 5CS1A 4Z0DA 5CT3A 5CT1A 4Z0EA 2QJ2A 5COEA 2YILA 3ZWZA 1GP9A 2LL3A 5CS3A 2J8JA 1GMOA 2HGFA 3HN4A 4R1BA 4A5TS 2X2ZA 5CS5A 1W81A 4Z09A 2Z8WA 2J8LA 5EOKA 2Y8RA 3SP8A 1I8NA 2LL4M 4UAOA 4UV6A 3HMSA 3ZLEA 1W8KA 4APLA 1HKYA 4R1AA 1GMNA 2YIOA 2Q8BA 2Z8VA 5CS9A 3HMTA 5EODA 4Z0FA 2F83A 4DURA 2Q8AA 3HMRA 3SRIA 2QJ4A 5CSQA 4R1CA 3SRJA 2YIPA 5I25A 5CP9A 4APMA 1Z40A
chains in the Genus database with same CATH superfamily
1B3CA 1CN2A 4H5RA 1K8BA 2YBRC 1T7EA 5CT3A 1ZVGA 2QJ2A 3KVGA 1C56A 4HHFA 2KHOA 2N66A 5CS5A 1CHZA 2J8LA 5AQNA 1NGJA 2E2FA 5AQZA 1B7DA 1S3XA 3L4IA 3JXUA 2QWQA 1NGIA 5AQMA 2BRZA 2ASCA 1JKZA 4FSVA 5AQUA 2J8JA 2G2KA 3KOXA 5F1XA 5F0XA 1OMYA 1YUWA 2QWLA 2N2QA 2KPYA 3I33A 3GDQA 3CW4A 1N4NA 1TI5A 1ZVEA 1LQQA 1GP9A 3C7NA 3GL1A 2LJ7A 4UAEF 1WMTA 4AEIA 4UAOA 3ZLEA 3LDLA 3LDQA 4UJ0A 2MBKA 1WT7A 2Q8AA 3ATUA 1KV0A 1MYNA 1YXEA 3KOZA 2KBJA 1XRSB 3KP1A 3QMLA 1BMRA 2ATBA 4CQKA 3HMRA 1ZUTA 2QJ4A 2M8BB 3HMTA 1QQMA 1C55A 5AQLA 4IUAA 2LJMA 2LN8A 5AR0A 3ZWZA 3FZMA 5AQXA 1NGCA 2QWPA 1JXCA 1I8NA 5FPEA 1T0ZA 1NE5A 1HJOA 5FPNA 4R19A 3KOYA 3LDOA 1DQ7A 1SN1A 1SNBA 1NH5A 4A5TS 2LI7A 1I6GA 4GNIA 5AQSA 1KAZA 1NGAA 1HKYA 3IUCA 5EODA 5BN8A 2F83A 4R1CA 5EXWA 1PX9A 1VNAA 2K35A 5BPNA 1QQOA 1HX1A 5KK4A 1BUPA 2Y8RA 2E0HA 4FL9A 1SN4A 2YIOA 5AQIA 2Z8VA 5AQYA 2BUPA 1I2VA 3D2EB 1BRZA 2YEOA 1NPIA 2KSKA 1WWNA 2NY9X 5AQGA 2LT8A 3GKUA 3KOWA 3SP8A 3E7UX 2LL4M 4UV6A 3HMSA 1AHOA 5EVZA 2LKBA 3A8YA 5I25A 5CSQA 1I6FA 5F2RA 2YC1C 1I2UA 1GPSA 5AQQA 1NGFA 2I61A 4AB0A 3QI7A 1W81A 5AQTA 3ATVA 3FZLA 1ZFUA 2QXLA 5EY4A 3FZHA 1BCGA 1NGGA 4APMA 3KC6A 2E8AA 3L56A 1NGDA 1QQNA 5COEA 1JZAA 5AQKA 3HN4A 3D2EA 4H5NA 1BK8A 4Z09A 1T7AA 2E88A 3M3ZA 5AQWA 4H5TA 4APLA 3FZKA 2Q8BA 2KL5A 2KJAA 2KYQA 1POIA 2E3FA 5FPDA 2A7TA 5EX5A 3D2FB 1HPMA 3MKPA 3CQXA 5CT1A 5AQJA 1KAXA 1ICAA 1LQHA 1NGHA 1GPTA 2QWOA 4YIZA 5BN9A 1P00A 5AQFA 1W8KA 5BPMA 1GMNA 1ZYWA 1NRBA 2D56A 3SF4D 1Z40A 4HWIA 2QWRA 1T1TA 3BK3C 4HE7A 4IO8A 2QWNA 2VY6A 1DJTA 1AYJA 4UAFE 1L4VA 3AY9A 1KAYA 2LY5A 1BA0A 3PSMA 3FZFA 4AAZA 3SRIA 2QWMA 2KGQA 3E7RL 1P0AA 2N2RA 3L6QA 4H5VA 4Z0EA 2QW9A 3KP0A 1NGBA 3QFPA 3D2FA 3LDNA 4YIVA 2Z8WA 1BA1A 1OZZA 3LDPA 1ATSA 2MZ0A 5AQHA 4Z0FA 1ZU3A 3SRJA 2YIPA 1BHTA 1JZBA 2K13X 1ATRA 2YILA 2LL3A 4KYPA 2MN5A 3HSCA 2SN3A 5FPMA 5EOKA 4KBOA 2LR3A 2V7ZA 5CP9A 3QFUA 1ZYVA 2LY6A 5AQRA 5CT2A 5BPLA 5CS1A 4Z0DA 1VNBA 2NY8X 2B3CA 5CS3A 4R1BA 2HGFA 2JDQD 1T7BA 5CY0A 2E3GA 4R1AA 2GL1A 4DURA 1PE4A 1PTXA 1NGEA 5AQOA 2KBKA 1NK1A 2B68A 4V1DC 3R2VA 2GMOA 1SEGA 1GMOA 1LQIA 2X2ZA 1UGLA 1DKGD 2N69A 1FH3A 1MR4A 5AQVA 5CS9A 4H5WA 2KBHA 3KHWA 1NRAA 3FE1A 5AQPA 3C7NB 4UADE
chains in the Genus database with same CATH topology
5AQLA 4H5RA 5F2RA 4IUAA 3L6QA 4H5VA 5CT3A 2LN8A 4Z0EA 2QJ2A 5AR0A 2QW9A 3KVGA 3ZWZA 1NGBA 1QQMA 3QFPA 1NGFA 5AQQA 2KHOA 3D2FA 3FZMA 3LDNA 3QI7A 5AQXA 1NGCA 5CS5A 4YIVA 1W81A 2QWPA 2Z8WA 5AQTA 2J8LA 1BA1A 5AQNA 3LDPA 1ATSA 3ATVA 1I8NA 5FPEA 3FZLA 1NGJA 2E2FA 5AQHA 5AQZA 4Z0FA 1HJOA 1S3XA 2QXLA 3L4IA 5EY4A 5FPNA 3SRJA 2YIPA 3JXUA 3FZHA 1NGGA 4APMA 3KC6A 4R19A 2QWQA 2E8AA 1BHTA 1NGIA 5AQMA 2K13X 3L56A 3LDOA 1NGDA 1ATRA 1QQNA 5COEA 2YILA 2LL3A 4FSVA 5AQUA 2J8JA 5AQKA 3HN4A 2MN5A 4A5TS 3D2EA 4GNIA 4H5NA 4Z09A 3HSCA 5AQSA 5FPMA 2E88A 3M3ZA 5F1XA 1KAZA 5AQWA 5EOKA 1NGAA 4H5TA 4APLA 5F0XA 3FZKA 4KBOA 1HKYA 3IUCA 2Q8BA 2KL5A 5EODA 5BN8A 2F83A 2V7ZA 1YUWA 2QWLA 4R1CA 1POIA 5EXWA 5CP9A 5FPDA 3QFUA 3I33A 3D2FB 1HPMA 5EX5A 3GDQA 5AQRA 3MKPA 3CW4A 5CT2A 2K35A 5BPLA 5CS1A 4Z0DA 3CQXA 5CT1A 5AQJA 1KAXA 5BPNA 1NGHA 3C7NA 1GP9A 5CS3A 4R1BA 1QQOA 1HX1A 2JDQD 3GL1A 2QWOA 4UAEF 1BUPA 2HGFA 4YIZA 5BN9A 2Y8RA 4UAOA 3ZLEA 4FL9A 5AQFA 1W8KA 3LDLA 5BPMA 4R1AA 3LDQA 1GMNA 2YIOA 5AQIA 2MBKA 2Z8VA 5AQYA 4DURA 2Q8AA 2BUPA 2D56A 3ATUA 1NGEA 5AQOA 3SF4D 1Z40A 1NK1A 4HWIA 2QWRA 3BK3C 3D2EB 4IO8A 1YXEA 3R2VA 2QWNA 2VY6A 4UAFE 2GMOA 1GMOA 3AY9A 2X2ZA 5AQGA 1KAYA 1DKGD 3QMLA 1BA0A 3SP8A 2LL4M 4UV6A 3HMSA 5AQVA 3FZFA 3A8YA 3KHWA 4H5WA 5EVZA 5CS9A 3FE1A 3HMRA 5AQPA 3SRIA 2QWMA 2QJ4A 5CSQA 5I25A 3HMTA 3C7NB 4UADE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NK1 A;  3MKP A;  4R19 A;  1BHT A;  4IUA A;  5CT2 A;  1YXE A;  2K13 X;  5CS1 A;  4Z0D A;  5CT3 A;  5CT1 A;  4Z0E A;  2QJ2 A;  5COE A;  2YIL A;  3ZWZ A;  1GP9 A;  2LL3 A;  5CS3 A;  2J8J A;  1GMO A;  2HGF A;  3HN4 A;  4R1B A;  4A5T S;  2X2Z A;  5CS5 A;  1W81 A;  4Z09 A;  2Z8W A;  2J8L A;  5EOK A;  2Y8R A;  3SP8 A;  1I8N A;  2LL4 M;  4UAO A;  4UV6 A;  3HMS A;  3ZLE A;  1W8K A;  4APL A;  1HKY A;  4R1A A;  1GMN A;  2YIO A;  2Q8B A;  2Z8V A;  5CS9 A;  3HMT A;  5EOD A;  4Z0F A;  2F83 A;  4DUR A;  2Q8A A;  3HMR A;  3SRI A;  2QJ4 A;  5CSQ A;  4R1C A;  3SRJ A;  2YIP A;  5I25 A;  5CP9 A;  4APM A;  1Z40 A; 
#chains in the Genus database with same CATH topology
 1B3C A;  1CN2 A;  4H5R A;  1K8B A;  2YBR C;  1T7E A;  5CT3 A;  1ZVG A;  2QJ2 A;  3KVG A;  1C56 A;  4HHF A;  2KHO A;  2N66 A;  5CS5 A;  1CHZ A;  2J8L A;  5AQN A;  1NGJ A;  2E2F A;  5AQZ A;  1B7D A;  1S3X A;  3L4I A;  3JXU A;  2QWQ A;  1NGI A;  5AQM A;  2BRZ A;  2ASC A;  1JKZ A;  4FSV A;  5AQU A;  2J8J A;  2G2K A;  3KOX A;  5F1X A;  5F0X A;  1OMY A;  1YUW A;  2QWL A;  2N2Q A;  2KPY A;  3I33 A;  3GDQ A;  3CW4 A;  1N4N A;  1TI5 A;  1ZVE A;  1LQQ A;  1GP9 A;  3C7N A;  3GL1 A;  2LJ7 A;  4UAE F;  1WMT A;  4AEI A;  4UAO A;  3ZLE A;  3LDL A;  3LDQ A;  4UJ0 A;  2MBK A;  1WT7 A;  2Q8A A;  3ATU A;  1KV0 A;  1MYN A;  1YXE A;  3KOZ A;  2KBJ A;  1XRS B;  3KP1 A;  3QML A;  1BMR A;  2ATB A;  4CQK A;  3HMR A;  1ZUT A;  2QJ4 A;  2M8B B;  3HMT A;  1QQM A;  1C55 A;  5AQL A;  4IUA A;  2LJM A;  2LN8 A;  5AR0 A;  3ZWZ A;  3FZM A;  5AQX A;  1NGC A;  2QWP A;  1JXC A;  1I8N A;  5FPE A;  1T0Z A;  1NE5 A;  1HJO A;  5FPN A;  4R19 A;  3KOY A;  3LDO A;  1DQ7 A;  1SN1 A;  1SNB A;  1NH5 A;  4A5T S;  2LI7 A;  1I6G A;  4GNI A;  5AQS A;  1KAZ A;  1NGA A;  1HKY A;  3IUC A;  5EOD A;  5BN8 A;  2F83 A;  4R1C A;  5EXW A;  1PX9 A;  1VNA A;  2K35 A;  5BPN A;  1QQO A;  1HX1 A;  5KK4 A;  1BUP A;  2Y8R A;  2E0H A;  4FL9 A;  1SN4 A;  2YIO A;  5AQI A;  2Z8V A;  5AQY A;  2BUP A;  1I2V A;  3D2E B;  1BRZ A;  2YEO A;  1NPI A;  2KSK A;  1WWN A;  2NY9 X;  5AQG A;  2LT8 A;  3GKU A;  3KOW A;  3SP8 A;  3E7U X;  2LL4 M;  4UV6 A;  3HMS A;  1AHO A;  5EVZ A;  2LKB A;  3A8Y A;  5I25 A;  5CSQ A;  1I6F A;  5F2R A;  2YC1 C;  1I2U A;  1GPS A;  5AQQ A;  1NGF A;  2I61 A;  4AB0 A;  3QI7 A;  1W81 A;  5AQT A;  3ATV A;  3FZL A;  1ZFU A;  2QXL A;  5EY4 A;  3FZH A;  1BCG A;  1NGG A;  4APM A;  3KC6 A;  2E8A A;  3L56 A;  1NGD A;  1QQN A;  5COE A;  1JZA A;  5AQK A;  3HN4 A;  3D2E A;  4H5N A;  1BK8 A;  4Z09 A;  1T7A A;  2E88 A;  3M3Z A;  5AQW A;  4H5T A;  4APL A;  3FZK A;  2Q8B A;  2KL5 A;  2KJA A;  2KYQ A;  1POI A;  2E3F A;  5FPD A;  2A7T A;  5EX5 A;  3D2F B;  1HPM A;  3MKP A;  3CQX A;  5CT1 A;  5AQJ A;  1KAX A;  1ICA A;  1LQH A;  1NGH A;  1GPT A;  2QWO A;  4YIZ A;  5BN9 A;  1P00 A;  5AQF A;  1W8K A;  5BPM A;  1GMN A;  1ZYW A;  1NRB A;  2D56 A;  3SF4 D;  1Z40 A;  4HWI A;  2QWR A;  1T1T A;  3BK3 C;  4HE7 A;  4IO8 A;  2QWN A;  2VY6 A;  1DJT A;  1AYJ A;  4UAF E;  1L4V A;  3AY9 A;  1KAY A;  2LY5 A;  1BA0 A;  3PSM A;  3FZF A;  4AAZ A;  3SRI A;  2QWM A;  2KGQ A;  3E7R L;  1P0A A;  2N2R A;  3L6Q A;  4H5V A;  4Z0E A;  2QW9 A;  3KP0 A;  1NGB A;  3QFP A;  3D2F A;  3LDN A;  4YIV A;  2Z8W A;  1BA1 A;  1OZZ A;  3LDP A;  1ATS A;  2MZ0 A;  5AQH A;  4Z0F A;  1ZU3 A;  3SRJ A;  2YIP A;  1BHT A;  1JZB A;  2K13 X;  1ATR A;  2YIL A;  2LL3 A;  4KYP A;  2MN5 A;  3HSC A;  2SN3 A;  5FPM A;  5EOK A;  4KBO A;  2LR3 A;  2V7Z A;  5CP9 A;  3QFU A;  1ZYV A;  2LY6 A;  5AQR A;  5CT2 A;  5BPL A;  5CS1 A;  4Z0D A;  1VNB A;  2NY8 X;  2B3C A;  5CS3 A;  4R1B A;  2HGF A;  2JDQ D;  1T7B A;  5CY0 A;  2E3G A;  4R1A A;  2GL1 A;  4DUR A;  1PE4 A;  1PTX A;  1NGE A;  5AQO A;  2KBK A;  1NK1 A;  2B68 A;  4V1D C;  3R2V A;  2GMO A;  1SEG A;  1GMO A;  1LQI A;  2X2Z A;  1UGL A;  1DKG D;  2N69 A;  1FH3 A;  1MR4 A;  5AQV A;  5CS9 A;  4H5W A;  2KBH A;  3KHW A;  1NRA A;  3FE1 A;  5AQP A;  3C7N B;  4UAD E; 
#chains in the Genus database with same CATH homology
 5AQL A;  4H5R A;  5F2R A;  4IUA A;  3L6Q A;  4H5V A;  5CT3 A;  2LN8 A;  4Z0E A;  2QJ2 A;  5AR0 A;  2QW9 A;  3KVG A;  3ZWZ A;  1NGB A;  1QQM A;  3QFP A;  1NGF A;  5AQQ A;  2KHO A;  3D2F A;  3FZM A;  3LDN A;  3QI7 A;  5AQX A;  1NGC A;  5CS5 A;  4YIV A;  1W81 A;  2QWP A;  2Z8W A;  5AQT A;  2J8L A;  1BA1 A;  5AQN A;  3LDP A;  1ATS A;  3ATV A;  1I8N A;  5FPE A;  3FZL A;  1NGJ A;  2E2F A;  5AQH A;  5AQZ A;  4Z0F A;  1HJO A;  1S3X A;  2QXL A;  3L4I A;  5EY4 A;  5FPN A;  3SRJ A;  2YIP A;  3JXU A;  3FZH A;  1NGG A;  4APM A;  3KC6 A;  4R19 A;  2QWQ A;  2E8A A;  1BHT A;  1NGI A;  5AQM A;  2K13 X;  3L56 A;  3LDO A;  1NGD A;  1ATR A;  1QQN A;  5COE A;  2YIL A;  2LL3 A;  4FSV A;  5AQU A;  2J8J A;  5AQK A;  3HN4 A;  2MN5 A;  4A5T S;  3D2E A;  4GNI A;  4H5N A;  4Z09 A;  3HSC A;  5AQS A;  5FPM A;  2E88 A;  3M3Z A;  5F1X A;  1KAZ A;  5AQW A;  5EOK A;  1NGA A;  4H5T A;  4APL A;  5F0X A;  3FZK A;  4KBO A;  1HKY A;  3IUC A;  2Q8B A;  2KL5 A;  5EOD A;  5BN8 A;  2F83 A;  2V7Z A;  1YUW A;  2QWL A;  4R1C A;  1POI A;  5EXW A;  5CP9 A;  5FPD A;  3QFU A;  3I33 A;  3D2F B;  1HPM A;  5EX5 A;  3GDQ A;  5AQR A;  3MKP A;  3CW4 A;  5CT2 A;  2K35 A;  5BPL A;  5CS1 A;  4Z0D A;  3CQX A;  5CT1 A;  5AQJ A;  1KAX A;  5BPN A;  1NGH A;  3C7N A;  1GP9 A;  5CS3 A;  4R1B A;  1QQO A;  1HX1 A;  2JDQ D;  3GL1 A;  2QWO A;  4UAE F;  1BUP A;  2HGF A;  4YIZ A;  5BN9 A;  2Y8R A;  4UAO A;  3ZLE A;  4FL9 A;  5AQF A;  1W8K A;  3LDL A;  5BPM A;  4R1A A;  3LDQ A;  1GMN A;  2YIO A;  5AQI A;  2MBK A;  2Z8V A;  5AQY A;  4DUR A;  2Q8A A;  2BUP A;  2D56 A;  3ATU A;  1NGE A;  5AQO A;  3SF4 D;  1Z40 A;  1NK1 A;  4HWI A;  2QWR A;  3BK3 C;  3D2E B;  4IO8 A;  1YXE A;  3R2V A;  2QWN A;  2VY6 A;  4UAF E;  2GMO A;  1GMO A;  3AY9 A;  2X2Z A;  5AQG A;  1KAY A;  1DKG D;  3QML A;  1BA0 A;  3SP8 A;  2LL4 M;  4UV6 A;  3HMS A;  5AQV A;  3FZF A;  3A8Y A;  3KHW A;  4H5W A;  5EVZ A;  5CS9 A;  3FE1 A;  3HMR A;  5AQP A;  3SRI A;  2QWM A;  2QJ4 A;  5CSQ A;  5I25 A;  3HMT A;  3C7N B;  4UAD E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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