2YK5A

Structure of neisseria los-specific sialyltransferase (nst), in complex with cmp.
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
326
structure length
326
Chain Sequence
PVNLIFCYTILQMKVAERIMAQHPGERFYVVLMSENRNEKYDYYFNQIKDKAEWAYFFHLPYGLNKSFNFIPTMAELKVKAMLLPKVKRIYLASLEKVSIAAFLSTYPDAEIKTFDDGTINLIQSSSYLGDEFSVNGTIKRNFARMMIGDWSIAKTRNASDEHYTIFKGLKNIMDDGRRKMTYLPLFDASELKAGDETGGTVRILLGSPDKEMKEISEKAAKNFNIQYVAPHPRQTYGLSGVTTLNSPYVIEDYILREIKKNPHTRYEIYTFFSGAALTMKDFPNVHVYALKPASLPEDYWLKPVYALFTQSGIPILTFDDKLVPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords CMP-N-ACETYLNEURAMINATE-BETA-GALACTOSAMIDE-ALPHA-2,3-SIALYLT
publication title Structure and Mechanism of the Lipooligosaccharide Sialyltransferase from Neisseria Meningitidis
pubmed doi rcsb
source organism Neisseria meningitidis serogroup b
total genus 83
structure length 326
sequence length 326
ec nomenclature ec 2.4.99.6: N-acetyllactosaminide alpha-2,3-sialyltransferase.
pdb deposition date 2011-05-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07922 Glyco_transf_52 Glycosyltransferase family 52
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.370.20 Alpha Beta 2-Layer Sandwich Barnase; Chain D Barnase; Chain D 2yk5A01
2YK7A 2YK4A 2YK6A 2YK5A
chains in the Genus database with same CATH superfamily
2YK4A 5F4CA 1B2UD 1B27D 2YK5A 1BRSD 1X1XD 1B3SD 1BTBA 1BGSE 1X1YD 2HXXA 1BTAA 1AY7B 1A19A 2ZA4B 1X1UD 1B2SD 3DA7C 1X1WD 2YK7A 2CX6A 1AB7A 2YK6A
chains in the Genus database with same CATH topology
2YK7A 2YK4A 2YK6A 2YK5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YK7 A;  2YK4 A;  2YK6 A;  2YK5 A; 
#chains in the Genus database with same CATH topology
 2YK4 A;  5F4C A;  1B2U D;  1B27 D;  2YK5 A;  1BRS D;  1X1X D;  1B3S D;  1BTB A;  1BGS E;  1X1Y D;  2HXX A;  1BTA A;  1AY7 B;  1A19 A;  2ZA4 B;  1X1U D;  1B2S D;  3DA7 C;  1X1W D;  2YK7 A;  2CX6 A;  1AB7 A;  2YK6 A; 
#chains in the Genus database with same CATH homology
 2YK7 A;  2YK4 A;  2YK6 A;  2YK5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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