2YKDA

Structure of the matrix protein from human respiratory syncytial virus
Total Genus 63
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
sequence length
256
structure length
255
Chain Sequence
EMETYVNKLHEGSTYTAAVQYNVLEKDDDPASLTIWVPMFQSSMPADLLIKELANVNILVKQISTPKGPSLRVMINSRSAVLAQMPSKFTICANVSLDDSKLAYDVTTPCEIKACSLTCLKSKNMLTTVKDLTMKTLNPTHDIIALCEFENIVTSKKVIIPTYLRSISVRNKDLNTLENITTTEFKNAITNAKIIPYSGLLLVITVTDNKGAFKYIKPQSQFIVDLGAYLEKESIYYVTTNWKHTATRFAIKPME
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein
molecule keywords MATRIX PROTEIN
publication title Influence of Lipids on the Interfacial Disposition of Respiratory Syncytical Virus Matrix Protein.
pubmed doi rcsb
source organism Human respiratory syncytial virus
total genus 63
structure length 255
sequence length 256
ec nomenclature
pdb deposition date 2011-05-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03393 Pneumo_matrix Pneumovirus matrix protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.20.30 Mainly Beta Distorted Sandwich Topoisomerase I; domain 3 Topoisomerase I; domain 3 2ykdA01
4D4TA 2YKDA 2VQPA 4LP7A 4V23A
chains in the Genus database with same CATH superfamily
1CYYA 3PWTA 1CY4A 4LDMA 3PX7A 1CY8A 4CHTA 2GAJA 4HIYA 4G1GA 1I7DA 1H2DA 2O19A 4HITA 4V23A 4D4TA 3TCQA 2YKDA 4LDDA 1ECLA 4LP7A 1MW9X 2GAIA 1CY1A 4HI6A 4HIWA 4LD8A 4HIUA 4CGYA 1CY2A 1CY9A 2VQPA 1CY7A 1CY6A 1D6MA 1ES6A 5D5HA 4LDBA 1H2CA 4RULA 2O59A 1CY0A 4G1LA 2O5CA 2O54A 4G1OA 3F1JA 2O5EA 4HI5A 1MW8X 5B0VA
chains in the Genus database with same CATH topology
4LDMA 4HIYA 4G1GA 1H2DA 4HITA 4V23A 4D4TA 3TCQA 2YKDA 4LDDA 4LP7A 4HI6A 4HIWA 4LD8A 4HIUA 2VQPA 1ES6A 4LDBA 1H2CA 4G1LA 4G1OA 3F1JA 4HI5A 5B0VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4D4T A;  2YKD A;  2VQP A;  4LP7 A;  4V23 A; 
#chains in the Genus database with same CATH topology
 1CYY A;  3PWT A;  1CY4 A;  4LDM A;  3PX7 A;  1CY8 A;  4CHT A;  2GAJ A;  4HIY A;  4G1G A;  1I7D A;  1H2D A;  2O19 A;  4HIT A;  4V23 A;  4D4T A;  3TCQ A;  2YKD A;  4LDD A;  1ECL A;  4LP7 A;  1MW9 X;  2GAI A;  1CY1 A;  4HI6 A;  4HIW A;  4LD8 A;  4HIU A;  4CGY A;  1CY2 A;  1CY9 A;  2VQP A;  1CY7 A;  1CY6 A;  1D6M A;  1ES6 A;  5D5H A;  4LDB A;  1H2C A;  4RUL A;  2O59 A;  1CY0 A;  4G1L A;  2O5C A;  2O54 A;  4G1O A;  3F1J A;  2O5E A;  4HI5 A;  1MW8 X;  5B0V A; 
#chains in the Genus database with same CATH homology
 4LDM A;  4HIY A;  4G1G A;  1H2D A;  4HIT A;  4V23 A;  4D4T A;  3TCQ A;  2YKD A;  4LDD A;  4LP7 A;  4HI6 A;  4HIW A;  4LD8 A;  4HIU A;  2VQP A;  1ES6 A;  4LDB A;  1H2C A;  4G1L A;  4G1O A;  3F1J A;  4HI5 A;  5B0V A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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