2YMEA

Crystal structure of a mutant binding protein (5htbp-achbp) in complex with granisetron
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
205
structure length
205
Chain Sequence
QANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKVDSSTNEVDLVYWERQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGVTCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Receptor
source organism Aplysia californica
publication title Structural Basis of Ligand Recognition in 5-Ht3 Receptors.
pubmed doi rcsb
molecule keywords SOLUBLE ACETYLCHOLINE RECEPTOR
total genus 47
structure length 205
sequence length 205
chains with identical sequence B, C, D, E, F, G, H, I, J
ec nomenclature
pdb deposition date 2012-10-09
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 2ymeA00
4TWFA 5BP0A 5JMEA 3UU6A 3T4MA 3TLUA 2QC1B 4HFHA 2XQ5A 4IL9A 3UQ7A 5J5GA 4ALXA 3WTNA 4ILBA 2YMDA 4ZRUA 3TLTA 4HQPA 3PEOA 3RIFA 4EZ1A 3RI5A 2W8GA 4HFDA 3RHWA 3TLWA 5CFBA 5L4HA 5J5IA 3WIPA 3UU4A 4LMLA 3UU5A 3WTJA 4BFQA 5AFLA 5BW2A 3WTOA 4AFHA 3WTIA 2BR8A 4AFGA 3UU8A 4HFIA 4QH4A 4ZJSA 4BQTA 2VL0A 2XZ6A 3LSVA 2BYRA 3U8MA 2XNUA 4UM3P 2Y7YA 2XQ7A 1UX2A 5HEHA 2XYTA 4A98A 2PGZA 3P4WA 4UM1A 2WNCA 2YMEA 2XNVA 3EI0A 4B5DA 4UY2A 5KE4A 2BJ0A 4DBMA 4Z91A 3JAFA 2WZYA 2XYSA 2XQAA 5AFKA 5AFJA 4NPPA 4HFCA 5HCJA 5KZUA 2ZJUA 2BYNA 2X00A 5HEUA 4WV9A 4XK9A 4UM3S 5BRXA 4TWHA 5HCMA 3SQ6A 2BG9C 2XQ8A 5HEGA 2Y54A 2BG9B 2XZ5A 4IREA 4LMJA 4QH1A 3ZDGA 4ZZBA 2BR7A 3P50A 5LXBA 3ZDHA 4QACA 4TWDA 2BYPA 2WNLA 4ZK1A 3WTKA 4X5TA 5J5HA 3RIAA 3C79A 4QAAA 5AFMB 2WN9A 4UM3A 2BG9A 4ILCA 3RQWA 3SH1A 2XQ9A 4NZBA 2PH9A 2XNTA 4QABA 5HEOA 5J0ZA 4ZK4A 3IGQA 4ILAA 2XQ4A 2W8FA 3TLVA 3U8LA 5L4EA 4IL4A 4Z90A 5AFMA 1UW6A 2UZ6A 4PIRA 3WTLA 4COFA 2C9TA 2WNJA 2YN6A 3UQ4A 5J5FA 3GUAA 3U8KA 4XHEA 3EHZA 2Y58A 3PMZA 3SQ9A 3TLSA 3SIOA 5FJVA 2YKSA 4QH5A 5AINA 4TNWA 3JADA 2BG9E 3C84A 5L47A 2X00D 3UU3A 2Y57A 4HFBA 4ZZCA 2YOEA 4F8HA 4HFEA 2XQ3A 2BYSA 4AFTA 3WTMA 5LG3A 3U8JA 4UXUA 5IUXA 5HEJA 5CO5A 1I9BA 5SYOA 5TVCA 5AFHA 3WTHA 2ZJVA 3ZKRA 5AFNA 3RQUA 4D01A 4ZR6A 3U8NA 3UUBA 4A97A 2XQ6A 4FRRA 4TNVA 2Y56A 4ZJTA 1UV6A 2BYQA 3EAMA 4LMKA 3JAEA
chains in the Genus database with same CATH superfamily
4TWFA 5BP0A 5JMEA 3UU6A 3T4MA 3TLUA 2QC1B 4HFHA 2XQ5A 4IL9A 3UQ7A 5J5GA 4ALXA 3WTNA 4ILBA 2YMDA 4ZRUA 3TLTA 4HQPA 3PEOA 3RIFA 4EZ1A 3RI5A 2W8GA 4HFDA 3RHWA 3TLWA 5CFBA 5L4HA 5J5IA 3WIPA 3UU4A 4LMLA 3UU5A 3WTJA 4BFQA 5AFLA 5BW2A 3WTOA 4AFHA 3WTIA 2BR8A 4AFGA 3UU8A 4HFIA 4QH4A 4ZJSA 4BQTA 2VL0A 2XZ6A 3LSVA 2BYRA 3U8MA 2XNUA 4UM3P 2Y7YA 2XQ7A 1UX2A 5HEHA 2XYTA 4A98A 2PGZA 3P4WA 4UM1A 2WNCA 2YMEA 2XNVA 3EI0A 4B5DA 4UY2A 5KE4A 2BJ0A 4DBMA 4Z91A 3JAFA 2WZYA 2XYSA 2XQAA 5AFKA 5AFJA 4NPPA 4HFCA 5HCJA 5KZUA 2ZJUA 2BYNA 2X00A 5HEUA 4WV9A 4XK9A 4UM3S 5BRXA 4TWHA 5HCMA 3SQ6A 2BG9C 2XQ8A 5HEGA 2Y54A 2BG9B 2XZ5A 4IREA 4LMJA 4QH1A 3ZDGA 4ZZBA 2BR7A 3P50A 5LXBA 3ZDHA 4QACA 4TWDA 2BYPA 2WNLA 4ZK1A 3WTKA 4X5TA 5J5HA 3RIAA 3C79A 4QAAA 5AFMB 2WN9A 4UM3A 2BG9A 4ILCA 3RQWA 3SH1A 2XQ9A 4NZBA 2PH9A 2XNTA 4QABA 5HEOA 5J0ZA 4ZK4A 3IGQA 4ILAA 2XQ4A 2W8FA 3TLVA 3U8LA 5L4EA 4IL4A 4Z90A 5AFMA 1UW6A 2UZ6A 4PIRA 3WTLA 4COFA 2C9TA 2WNJA 2YN6A 3UQ4A 5J5FA 3GUAA 3U8KA 4XHEA 3EHZA 2Y58A 3PMZA 3SQ9A 3TLSA 3SIOA 5FJVA 2YKSA 4QH5A 5AINA 4TNWA 3JADA 2BG9E 3C84A 5L47A 2X00D 3UU3A 2Y57A 4HFBA 4ZZCA 2YOEA 4F8HA 4HFEA 2XQ3A 2BYSA 4AFTA 3WTMA 5LG3A 3U8JA 4UXUA 5IUXA 5HEJA 5CO5A 1I9BA 5SYOA 5TVCA 5AFHA 3WTHA 2ZJVA 3ZKRA 5AFNA 3RQUA 4D01A 4ZR6A 3U8NA 3UUBA 4A97A 2XQ6A 4FRRA 4TNVA 2Y56A 4ZJTA 1UV6A 2BYQA 3EAMA 4LMKA 3JAEA
chains in the Genus database with same CATH topology
4TWFA 5BP0A 5JMEA 3UU6A 3T4MA 3TLUA 2QC1B 4HFHA 2XQ5A 4IL9A 3UQ7A 5J5GA 4ALXA 3WTNA 4ILBA 2YMDA 4ZRUA 3TLTA 4HQPA 3PEOA 3RIFA 4EZ1A 3RI5A 2W8GA 4HFDA 3RHWA 3TLWA 5CFBA 5L4HA 5J5IA 3WIPA 3UU4A 4LMLA 3UU5A 3WTJA 4BFQA 5AFLA 5BW2A 3WTOA 4AFHA 3WTIA 2BR8A 4AFGA 3UU8A 4HFIA 4QH4A 4ZJSA 4BQTA 2VL0A 2XZ6A 3LSVA 2BYRA 3U8MA 2XNUA 4UM3P 2Y7YA 2XQ7A 1UX2A 5HEHA 2XYTA 4A98A 2PGZA 3P4WA 4UM1A 2WNCA 2YMEA 2XNVA 3EI0A 4B5DA 4UY2A 5KE4A 2BJ0A 4DBMA 4Z91A 3JAFA 2WZYA 2XYSA 2XQAA 5AFKA 5AFJA 4NPPA 4HFCA 5HCJA 5KZUA 2ZJUA 2BYNA 2X00A 5HEUA 4WV9A 4XK9A 4UM3S 5BRXA 4TWHA 5HCMA 3SQ6A 2BG9C 2XQ8A 5HEGA 2Y54A 2BG9B 2XZ5A 4IREA 4LMJA 4QH1A 3ZDGA 4ZZBA 2BR7A 3P50A 5LXBA 3ZDHA 4QACA 4TWDA 2BYPA 2WNLA 4ZK1A 3WTKA 4X5TA 5J5HA 3RIAA 3C79A 4QAAA 5AFMB 2WN9A 4UM3A 2BG9A 4ILCA 3RQWA 3SH1A 2XQ9A 4NZBA 2PH9A 2XNTA 4QABA 5HEOA 5J0ZA 4ZK4A 3IGQA 4ILAA 2XQ4A 2W8FA 3TLVA 3U8LA 5L4EA 4IL4A 4Z90A 5AFMA 1UW6A 2UZ6A 4PIRA 3WTLA 4COFA 2C9TA 2WNJA 2YN6A 3UQ4A 5J5FA 3GUAA 3U8KA 4XHEA 3EHZA 2Y58A 3PMZA 3SQ9A 3TLSA 3SIOA 5FJVA 2YKSA 4QH5A 5AINA 4TNWA 3JADA 2BG9E 3C84A 5L47A 2X00D 3UU3A 2Y57A 4HFBA 4ZZCA 2YOEA 4F8HA 4HFEA 2XQ3A 2BYSA 4AFTA 3WTMA 5LG3A 3U8JA 4UXUA 5IUXA 5HEJA 5CO5A 1I9BA 5SYOA 5TVCA 5AFHA 3WTHA 2ZJVA 3ZKRA 5AFNA 3RQUA 4D01A 4ZR6A 3U8NA 3UUBA 4A97A 2XQ6A 4FRRA 4TNVA 2Y56A 4ZJTA 1UV6A 2BYQA 3EAMA 4LMKA 3JAEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4TWF A;  5BP0 A;  5JME A;  3UU6 A;  3T4M A;  3TLU A;  2QC1 B;  4HFH A;  2XQ5 A;  4IL9 A;  3UQ7 A;  5J5G A;  4ALX A;  3WTN A;  4ILB A;  2YMD A;  4ZRU A;  3TLT A;  4HQP A;  3PEO A;  3RIF A;  4EZ1 A;  3RI5 A;  2W8G A;  4HFD A;  3RHW A;  3TLW A;  5CFB A;  5L4H A;  5J5I A;  3WIP A;  3UU4 A;  4LML A;  3UU5 A;  3WTJ A;  4BFQ A;  5AFL A;  5BW2 A;  3WTO A;  4AFH A;  3WTI A;  2BR8 A;  4AFG A;  3UU8 A;  4HFI A;  4QH4 A;  4ZJS A;  4BQT A;  2VL0 A;  2XZ6 A;  3LSV A;  2BYR A;  3U8M A;  2XNU A;  4UM3 P;  2Y7Y A;  2XQ7 A;  1UX2 A;  5HEH A;  2XYT A;  4A98 A;  2PGZ A;  3P4W A;  4UM1 A;  2WNC A;  2YME A;  2XNV A;  3EI0 A;  4B5D A;  4UY2 A;  5KE4 A;  2BJ0 A;  4DBM A;  4Z91 A;  3JAF A;  2WZY A;  2XYS A;  2XQA A;  5AFK A;  5AFJ A;  4NPP A;  4HFC A;  5HCJ A;  5KZU A;  2ZJU A;  2BYN A;  2X00 A;  5HEU A;  4WV9 A;  4XK9 A;  4UM3 S;  5BRX A;  4TWH A;  5HCM A;  3SQ6 A;  2BG9 C;  2XQ8 A;  5HEG A;  2Y54 A;  2BG9 B;  2XZ5 A;  4IRE A;  4LMJ A;  4QH1 A;  3ZDG A;  4ZZB A;  2BR7 A;  3P50 A;  5LXB A;  3ZDH A;  4QAC A;  4TWD A;  2BYP A;  2WNL A;  4ZK1 A;  3WTK A;  4X5T A;  5J5H A;  3RIA A;  3C79 A;  4QAA A;  5AFM B;  2WN9 A;  4UM3 A;  2BG9 A;  4ILC A;  3RQW A;  3SH1 A;  2XQ9 A;  4NZB A;  2PH9 A;  2XNT A;  4QAB A;  5HEO A;  5J0Z A;  4ZK4 A;  3IGQ A;  4ILA A;  2XQ4 A;  2W8F A;  3TLV A;  3U8L A;  5L4E A;  4IL4 A;  4Z90 A;  5AFM A;  1UW6 A;  2UZ6 A;  4PIR A;  3WTL A;  4COF A;  2C9T A;  2WNJ A;  2YN6 A;  3UQ4 A;  5J5F A;  3GUA A;  3U8K A;  4XHE A;  3EHZ A;  2Y58 A;  3PMZ A;  3SQ9 A;  3TLS A;  3SIO A;  5FJV A;  2YKS A;  4QH5 A;  5AIN A;  4TNW A;  3JAD A;  2BG9 E;  3C84 A;  5L47 A;  2X00 D;  3UU3 A;  2Y57 A;  4HFB A;  4ZZC A;  2YOE A;  4F8H A;  4HFE A;  2XQ3 A;  2BYS A;  4AFT A;  3WTM A;  5LG3 A;  3U8J A;  4UXU A;  5IUX A;  5HEJ A;  5CO5 A;  1I9B A;  5SYO A;  5TVC A;  5AFH A;  3WTH A;  2ZJV A;  3ZKR A;  5AFN A;  3RQU A;  4D01 A;  4ZR6 A;  3U8N A;  3UUB A;  4A97 A;  2XQ6 A;  4FRR A;  4TNV A;  2Y56 A;  4ZJT A;  1UV6 A;  2BYQ A;  3EAM A;  4LMK A;  3JAE A; 
#chains in the Genus database with same CATH topology
 4TWF A;  5BP0 A;  5JME A;  3UU6 A;  3T4M A;  3TLU A;  2QC1 B;  4HFH A;  2XQ5 A;  4IL9 A;  3UQ7 A;  5J5G A;  4ALX A;  3WTN A;  4ILB A;  2YMD A;  4ZRU A;  3TLT A;  4HQP A;  3PEO A;  3RIF A;  4EZ1 A;  3RI5 A;  2W8G A;  4HFD A;  3RHW A;  3TLW A;  5CFB A;  5L4H A;  5J5I A;  3WIP A;  3UU4 A;  4LML A;  3UU5 A;  3WTJ A;  4BFQ A;  5AFL A;  5BW2 A;  3WTO A;  4AFH A;  3WTI A;  2BR8 A;  4AFG A;  3UU8 A;  4HFI A;  4QH4 A;  4ZJS A;  4BQT A;  2VL0 A;  2XZ6 A;  3LSV A;  2BYR A;  3U8M A;  2XNU A;  4UM3 P;  2Y7Y A;  2XQ7 A;  1UX2 A;  5HEH A;  2XYT A;  4A98 A;  2PGZ A;  3P4W A;  4UM1 A;  2WNC A;  2YME A;  2XNV A;  3EI0 A;  4B5D A;  4UY2 A;  5KE4 A;  2BJ0 A;  4DBM A;  4Z91 A;  3JAF A;  2WZY A;  2XYS A;  2XQA A;  5AFK A;  5AFJ A;  4NPP A;  4HFC A;  5HCJ A;  5KZU A;  2ZJU A;  2BYN A;  2X00 A;  5HEU A;  4WV9 A;  4XK9 A;  4UM3 S;  5BRX A;  4TWH A;  5HCM A;  3SQ6 A;  2BG9 C;  2XQ8 A;  5HEG A;  2Y54 A;  2BG9 B;  2XZ5 A;  4IRE A;  4LMJ A;  4QH1 A;  3ZDG A;  4ZZB A;  2BR7 A;  3P50 A;  5LXB A;  3ZDH A;  4QAC A;  4TWD A;  2BYP A;  2WNL A;  4ZK1 A;  3WTK A;  4X5T A;  5J5H A;  3RIA A;  3C79 A;  4QAA A;  5AFM B;  2WN9 A;  4UM3 A;  2BG9 A;  4ILC A;  3RQW A;  3SH1 A;  2XQ9 A;  4NZB A;  2PH9 A;  2XNT A;  4QAB A;  5HEO A;  5J0Z A;  4ZK4 A;  3IGQ A;  4ILA A;  2XQ4 A;  2W8F A;  3TLV A;  3U8L A;  5L4E A;  4IL4 A;  4Z90 A;  5AFM A;  1UW6 A;  2UZ6 A;  4PIR A;  3WTL A;  4COF A;  2C9T A;  2WNJ A;  2YN6 A;  3UQ4 A;  5J5F A;  3GUA A;  3U8K A;  4XHE A;  3EHZ A;  2Y58 A;  3PMZ A;  3SQ9 A;  3TLS A;  3SIO A;  5FJV A;  2YKS A;  4QH5 A;  5AIN A;  4TNW A;  3JAD A;  2BG9 E;  3C84 A;  5L47 A;  2X00 D;  3UU3 A;  2Y57 A;  4HFB A;  4ZZC A;  2YOE A;  4F8H A;  4HFE A;  2XQ3 A;  2BYS A;  4AFT A;  3WTM A;  5LG3 A;  3U8J A;  4UXU A;  5IUX A;  5HEJ A;  5CO5 A;  1I9B A;  5SYO A;  5TVC A;  5AFH A;  3WTH A;  2ZJV A;  3ZKR A;  5AFN A;  3RQU A;  4D01 A;  4ZR6 A;  3U8N A;  3UUB A;  4A97 A;  2XQ6 A;  4FRR A;  4TNV A;  2Y56 A;  4ZJT A;  1UV6 A;  2BYQ A;  3EAM A;  4LMK A;  3JAE A; 
#chains in the Genus database with same CATH homology
 4TWF A;  5BP0 A;  5JME A;  3UU6 A;  3T4M A;  3TLU A;  2QC1 B;  4HFH A;  2XQ5 A;  4IL9 A;  3UQ7 A;  5J5G A;  4ALX A;  3WTN A;  4ILB A;  2YMD A;  4ZRU A;  3TLT A;  4HQP A;  3PEO A;  3RIF A;  4EZ1 A;  3RI5 A;  2W8G A;  4HFD A;  3RHW A;  3TLW A;  5CFB A;  5L4H A;  5J5I A;  3WIP A;  3UU4 A;  4LML A;  3UU5 A;  3WTJ A;  4BFQ A;  5AFL A;  5BW2 A;  3WTO A;  4AFH A;  3WTI A;  2BR8 A;  4AFG A;  3UU8 A;  4HFI A;  4QH4 A;  4ZJS A;  4BQT A;  2VL0 A;  2XZ6 A;  3LSV A;  2BYR A;  3U8M A;  2XNU A;  4UM3 P;  2Y7Y A;  2XQ7 A;  1UX2 A;  5HEH A;  2XYT A;  4A98 A;  2PGZ A;  3P4W A;  4UM1 A;  2WNC A;  2YME A;  2XNV A;  3EI0 A;  4B5D A;  4UY2 A;  5KE4 A;  2BJ0 A;  4DBM A;  4Z91 A;  3JAF A;  2WZY A;  2XYS A;  2XQA A;  5AFK A;  5AFJ A;  4NPP A;  4HFC A;  5HCJ A;  5KZU A;  2ZJU A;  2BYN A;  2X00 A;  5HEU A;  4WV9 A;  4XK9 A;  4UM3 S;  5BRX A;  4TWH A;  5HCM A;  3SQ6 A;  2BG9 C;  2XQ8 A;  5HEG A;  2Y54 A;  2BG9 B;  2XZ5 A;  4IRE A;  4LMJ A;  4QH1 A;  3ZDG A;  4ZZB A;  2BR7 A;  3P50 A;  5LXB A;  3ZDH A;  4QAC A;  4TWD A;  2BYP A;  2WNL A;  4ZK1 A;  3WTK A;  4X5T A;  5J5H A;  3RIA A;  3C79 A;  4QAA A;  5AFM B;  2WN9 A;  4UM3 A;  2BG9 A;  4ILC A;  3RQW A;  3SH1 A;  2XQ9 A;  4NZB A;  2PH9 A;  2XNT A;  4QAB A;  5HEO A;  5J0Z A;  4ZK4 A;  3IGQ A;  4ILA A;  2XQ4 A;  2W8F A;  3TLV A;  3U8L A;  5L4E A;  4IL4 A;  4Z90 A;  5AFM A;  1UW6 A;  2UZ6 A;  4PIR A;  3WTL A;  4COF A;  2C9T A;  2WNJ A;  2YN6 A;  3UQ4 A;  5J5F A;  3GUA A;  3U8K A;  4XHE A;  3EHZ A;  2Y58 A;  3PMZ A;  3SQ9 A;  3TLS A;  3SIO A;  5FJV A;  2YKS A;  4QH5 A;  5AIN A;  4TNW A;  3JAD A;  2BG9 E;  3C84 A;  5L47 A;  2X00 D;  3UU3 A;  2Y57 A;  4HFB A;  4ZZC A;  2YOE A;  4F8H A;  4HFE A;  2XQ3 A;  2BYS A;  4AFT A;  3WTM A;  5LG3 A;  3U8J A;  4UXU A;  5IUX A;  5HEJ A;  5CO5 A;  1I9B A;  5SYO A;  5TVC A;  5AFH A;  3WTH A;  2ZJV A;  3ZKR A;  5AFN A;  3RQU A;  4D01 A;  4ZR6 A;  3U8N A;  3UUB A;  4A97 A;  2XQ6 A;  4FRR A;  4TNV A;  2Y56 A;  4ZJT A;  1UV6 A;  2BYQ A;  3EAM A;  4LMK A;  3JAE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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