2YMEA

Crystal structure of a mutant binding protein (5htbp-achbp) in complex with granisetron
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
205
structure length
205
Chain Sequence
b'QANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKVDSSTNEVDLVYWERQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGVTCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Basis of Ligand Recognition in 5-Ht3 Receptors.
pubmed doi rcsb
molecule keywords SOLUBLE ACETYLCHOLINE RECEPTOR
source organism Aplysia californica
molecule tags Receptor
total genus 47
structure length 205
sequence length 205
chains with identical sequence B, C, D, E, F, G, H, I, J
ec nomenclature
pdb deposition date 2012-10-09
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 2ymeA00
4LMLA 3SQ9A 2W8GA 4QH1A 5L4HA 4B5DA 3SH1A 4HFHA 3JAEA 2Y58A 4ILCA 4QH4A 3UQ7A 2W8FA 5SYOA 4UXUA 1UW6A 4XK9A 4ILAA 2XQ3A 5L4EA 2BYPA 2YMDA 5J5GA 3RHWA 3RIAA 5AFJA 3EAMA 4HFEA 4UM3S 4TWHA 5JMEA 2XZ5A 2ZJVA 5J5HA 4TNVA 3UU3A 4ALXA 2Y56A 2YMEA 3SIOA 4UM3A 2C9TA 5HEOA 3TLVA 2PH9A 5FJVA 2BJ0A 3RQWA 3PEOA 3WTHA 4Z90A 4ILBA 3T4MA 2XNTA 3GUAA 5HEUA 2XQ4A 2WNJA 3JADA 4FRRA 4ZK4A 4ZR6A 3U8NA 2YOEA 5AFMA 5AFNA 2BG9B 2XYSA 4F8HA 2UZ6A 4QH5A 2YN6A 4HFDA 5L47A 3WTKA 4A97A 5J5IA 5AFHA 5HEGA 4ZRUA 4BFQA 5LG3A 3IGQA 4D01A 5BW2A 2XNUA 2WZYA 3RI5A 4NPPA 3WTMA 3TLWA 4Z91A 3SQ6A 3P4WA 2XQ8A 3UU4A 3P50A 4UM3P 5HCMA 1I9BA 4UY2A 5BRXA 4QACA 2Y54A 4NZBA 4XHEA 2WNCA 2XQ5A 3ZDGA 2BYRA 3TLTA 2X00D 5IUXA 5LXBA 2BYNA 2QC1B 3U8LA 4HQPA 3UU5A 4LMKA 2XYTA 3PMZA 2WNLA 4BQTA 5CFBA 3RQUA 3WTLA 3UU6A 3U8JA 3EI0A 4ZZBA 4UM1A 3TLUA 2ZJUA 2YKSA 4AFGA 4TNWA 2Y57A 4ZZCA 4EZ1A 2BYQA 4HFBA 4ZK1A 2VL0A 3ZKRA 4DBMA 2XQ9A 3JAFA 3RIFA 3WTJA 2X00A 2BG9E 5CO5A 5J5FA 4WV9A 4A98A 4IL4A 4X5TA 5HEHA 4TWFA 3ZDHA 5AFMB 2Y7YA 1UV6A 4IL9A 3C84A 2BR8A 2XNVA 4COFA 5KE4A 2BG9C 3WTNA 5HEJA 3UQ4A 4HFIA 3WTOA 2XZ6A 4HFCA 2BR7A 2XQ6A 3LSVA 3U8KA 4ZJTA 4QABA 2BG9A 2XQAA 4ZJSA 3TLSA 2WN9A 5J0ZA 3WTIA 5HCJA 3WIPA 5AINA 3C79A 5BP0A 2BYSA 1UX2A 3UU8A 5AFLA 2XQ7A 3EHZA 4AFHA 4AFTA 2PGZA 3U8MA 3UUBA 4TWDA 4LMJA 5KZUA 4IREA 5AFKA 4PIRA 4QAAA 5TVCA
chains in the Genus database with same CATH superfamily
4LMLA 3SQ9A 2W8GA 4QH1A 5L4HA 4B5DA 3SH1A 4HFHA 3JAEA 2Y58A 4ILCA 4QH4A 3UQ7A 2W8FA 5SYOA 4UXUA 1UW6A 4XK9A 4ILAA 2XQ3A 5L4EA 2BYPA 2YMDA 5J5GA 3RHWA 3RIAA 5AFJA 3EAMA 4HFEA 4UM3S 4TWHA 5JMEA 2XZ5A 2ZJVA 5J5HA 4TNVA 3UU3A 4ALXA 2Y56A 2YMEA 3SIOA 4UM3A 2C9TA 5HEOA 3TLVA 2PH9A 5FJVA 2BJ0A 3RQWA 3PEOA 3WTHA 4Z90A 4ILBA 3T4MA 2XNTA 3GUAA 5HEUA 2XQ4A 2WNJA 3JADA 4FRRA 4ZK4A 4ZR6A 3U8NA 2YOEA 5AFMA 5AFNA 2BG9B 2XYSA 4F8HA 2UZ6A 4QH5A 2YN6A 4HFDA 5L47A 3WTKA 4A97A 5J5IA 5AFHA 5HEGA 4ZRUA 4BFQA 5LG3A 3IGQA 4D01A 5BW2A 2XNUA 2WZYA 3RI5A 4NPPA 3WTMA 3TLWA 4Z91A 3SQ6A 3P4WA 2XQ8A 3UU4A 3P50A 4UM3P 5HCMA 1I9BA 4UY2A 5BRXA 4QACA 2Y54A 4NZBA 4XHEA 2WNCA 2XQ5A 3ZDGA 2BYRA 3TLTA 2X00D 5IUXA 5LXBA 2BYNA 2QC1B 3U8LA 4HQPA 3UU5A 4LMKA 2XYTA 3PMZA 2WNLA 4BQTA 5CFBA 3RQUA 3WTLA 3UU6A 3U8JA 3EI0A 4ZZBA 4UM1A 3TLUA 2ZJUA 2YKSA 4AFGA 4TNWA 2Y57A 4ZZCA 4EZ1A 2BYQA 4HFBA 4ZK1A 2VL0A 3ZKRA 4DBMA 2XQ9A 3JAFA 3RIFA 3WTJA 2X00A 2BG9E 5CO5A 5J5FA 4WV9A 4A98A 4IL4A 4X5TA 5HEHA 4TWFA 3ZDHA 5AFMB 2Y7YA 1UV6A 4IL9A 3C84A 2BR8A 2XNVA 4COFA 5KE4A 2BG9C 3WTNA 5HEJA 3UQ4A 4HFIA 3WTOA 2XZ6A 4HFCA 2BR7A 2XQ6A 3LSVA 3U8KA 4ZJTA 4QABA 2BG9A 2XQAA 4ZJSA 3TLSA 2WN9A 5J0ZA 3WTIA 5HCJA 3WIPA 5AINA 3C79A 5BP0A 2BYSA 1UX2A 3UU8A 5AFLA 2XQ7A 3EHZA 4AFHA 4AFTA 2PGZA 3U8MA 3UUBA 4TWDA 4LMJA 5KZUA 4IREA 5AFKA 4PIRA 4QAAA 5TVCA
chains in the Genus database with same CATH topology
4LMLA 3SQ9A 2W8GA 4QH1A 5L4HA 4B5DA 3SH1A 4HFHA 3JAEA 2Y58A 4ILCA 4QH4A 3UQ7A 2W8FA 5SYOA 4UXUA 1UW6A 4XK9A 4ILAA 2XQ3A 5L4EA 2BYPA 2YMDA 5J5GA 3RHWA 3RIAA 5AFJA 3EAMA 4HFEA 4UM3S 4TWHA 5JMEA 2XZ5A 2ZJVA 5J5HA 4TNVA 3UU3A 4ALXA 2Y56A 2YMEA 3SIOA 4UM3A 2C9TA 5HEOA 3TLVA 2PH9A 5FJVA 2BJ0A 3RQWA 3PEOA 3WTHA 4Z90A 4ILBA 3T4MA 2XNTA 3GUAA 5HEUA 2XQ4A 2WNJA 3JADA 4FRRA 4ZK4A 4ZR6A 3U8NA 2YOEA 5AFMA 5AFNA 2BG9B 2XYSA 4F8HA 2UZ6A 4QH5A 2YN6A 4HFDA 5L47A 3WTKA 4A97A 5J5IA 5AFHA 5HEGA 4ZRUA 4BFQA 5LG3A 3IGQA 4D01A 5BW2A 2XNUA 2WZYA 3RI5A 4NPPA 3WTMA 3TLWA 4Z91A 3SQ6A 3P4WA 2XQ8A 3UU4A 3P50A 4UM3P 5HCMA 1I9BA 4UY2A 5BRXA 4QACA 2Y54A 4NZBA 4XHEA 2WNCA 2XQ5A 3ZDGA 2BYRA 3TLTA 2X00D 5IUXA 5LXBA 2BYNA 2QC1B 3U8LA 4HQPA 3UU5A 4LMKA 2XYTA 3PMZA 2WNLA 4BQTA 5CFBA 3RQUA 3WTLA 3UU6A 3U8JA 3EI0A 4ZZBA 4UM1A 3TLUA 2ZJUA 2YKSA 4AFGA 4TNWA 2Y57A 4ZZCA 4EZ1A 2BYQA 4HFBA 4ZK1A 2VL0A 3ZKRA 4DBMA 2XQ9A 3JAFA 3RIFA 3WTJA 2X00A 2BG9E 5CO5A 5J5FA 4WV9A 4A98A 4IL4A 4X5TA 5HEHA 4TWFA 3ZDHA 5AFMB 2Y7YA 1UV6A 4IL9A 3C84A 2BR8A 2XNVA 4COFA 5KE4A 2BG9C 3WTNA 5HEJA 3UQ4A 4HFIA 3WTOA 2XZ6A 4HFCA 2BR7A 2XQ6A 3LSVA 3U8KA 4ZJTA 4QABA 2BG9A 2XQAA 4ZJSA 3TLSA 2WN9A 5J0ZA 3WTIA 5HCJA 3WIPA 5AINA 3C79A 5BP0A 2BYSA 1UX2A 3UU8A 5AFLA 2XQ7A 3EHZA 4AFHA 4AFTA 2PGZA 3U8MA 3UUBA 4TWDA 4LMJA 5KZUA 4IREA 5AFKA 4PIRA 4QAAA 5TVCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LML A;  3SQ9 A;  2W8G A;  4QH1 A;  5L4H A;  4B5D A;  3SH1 A;  4HFH A;  3JAE A;  2Y58 A;  4ILC A;  4QH4 A;  3UQ7 A;  2W8F A;  5SYO A;  4UXU A;  1UW6 A;  4XK9 A;  4ILA A;  2XQ3 A;  5L4E A;  2BYP A;  2YMD A;  5J5G A;  3RHW A;  3RIA A;  5AFJ A;  3EAM A;  4HFE A;  4UM3 S;  4TWH A;  5JME A;  2XZ5 A;  2ZJV A;  5J5H A;  4TNV A;  3UU3 A;  4ALX A;  2Y56 A;  2YME A;  3SIO A;  4UM3 A;  2C9T A;  5HEO A;  3TLV A;  2PH9 A;  5FJV A;  2BJ0 A;  3RQW A;  3PEO A;  3WTH A;  4Z90 A;  4ILB A;  3T4M A;  2XNT A;  3GUA A;  5HEU A;  2XQ4 A;  2WNJ A;  3JAD A;  4FRR A;  4ZK4 A;  4ZR6 A;  3U8N A;  2YOE A;  5AFM A;  5AFN A;  2BG9 B;  2XYS A;  4F8H A;  2UZ6 A;  4QH5 A;  2YN6 A;  4HFD A;  5L47 A;  3WTK A;  4A97 A;  5J5I A;  5AFH A;  5HEG A;  4ZRU A;  4BFQ A;  5LG3 A;  3IGQ A;  4D01 A;  5BW2 A;  2XNU A;  2WZY A;  3RI5 A;  4NPP A;  3WTM A;  3TLW A;  4Z91 A;  3SQ6 A;  3P4W A;  2XQ8 A;  3UU4 A;  3P50 A;  4UM3 P;  5HCM A;  1I9B A;  4UY2 A;  5BRX A;  4QAC A;  2Y54 A;  4NZB A;  4XHE A;  2WNC A;  2XQ5 A;  3ZDG A;  2BYR A;  3TLT A;  2X00 D;  5IUX A;  5LXB A;  2BYN A;  2QC1 B;  3U8L A;  4HQP A;  3UU5 A;  4LMK A;  2XYT A;  3PMZ A;  2WNL A;  4BQT A;  5CFB A;  3RQU A;  3WTL A;  3UU6 A;  3U8J A;  3EI0 A;  4ZZB A;  4UM1 A;  3TLU A;  2ZJU A;  2YKS A;  4AFG A;  4TNW A;  2Y57 A;  4ZZC A;  4EZ1 A;  2BYQ A;  4HFB A;  4ZK1 A;  2VL0 A;  3ZKR A;  4DBM A;  2XQ9 A;  3JAF A;  3RIF A;  3WTJ A;  2X00 A;  2BG9 E;  5CO5 A;  5J5F A;  4WV9 A;  4A98 A;  4IL4 A;  4X5T A;  5HEH A;  4TWF A;  3ZDH A;  5AFM B;  2Y7Y A;  1UV6 A;  4IL9 A;  3C84 A;  2BR8 A;  2XNV A;  4COF A;  5KE4 A;  2BG9 C;  3WTN A;  5HEJ A;  3UQ4 A;  4HFI A;  3WTO A;  2XZ6 A;  4HFC A;  2BR7 A;  2XQ6 A;  3LSV A;  3U8K A;  4ZJT A;  4QAB A;  2BG9 A;  2XQA A;  4ZJS A;  3TLS A;  2WN9 A;  5J0Z A;  3WTI A;  5HCJ A;  3WIP A;  5AIN A;  3C79 A;  5BP0 A;  2BYS A;  1UX2 A;  3UU8 A;  5AFL A;  2XQ7 A;  3EHZ A;  4AFH A;  4AFT A;  2PGZ A;  3U8M A;  3UUB A;  4TWD A;  4LMJ A;  5KZU A;  4IRE A;  5AFK A;  4PIR A;  4QAA A;  5TVC A; 
#chains in the Genus database with same CATH topology
 4LML A;  3SQ9 A;  2W8G A;  4QH1 A;  5L4H A;  4B5D A;  3SH1 A;  4HFH A;  3JAE A;  2Y58 A;  4ILC A;  4QH4 A;  3UQ7 A;  2W8F A;  5SYO A;  4UXU A;  1UW6 A;  4XK9 A;  4ILA A;  2XQ3 A;  5L4E A;  2BYP A;  2YMD A;  5J5G A;  3RHW A;  3RIA A;  5AFJ A;  3EAM A;  4HFE A;  4UM3 S;  4TWH A;  5JME A;  2XZ5 A;  2ZJV A;  5J5H A;  4TNV A;  3UU3 A;  4ALX A;  2Y56 A;  2YME A;  3SIO A;  4UM3 A;  2C9T A;  5HEO A;  3TLV A;  2PH9 A;  5FJV A;  2BJ0 A;  3RQW A;  3PEO A;  3WTH A;  4Z90 A;  4ILB A;  3T4M A;  2XNT A;  3GUA A;  5HEU A;  2XQ4 A;  2WNJ A;  3JAD A;  4FRR A;  4ZK4 A;  4ZR6 A;  3U8N A;  2YOE A;  5AFM A;  5AFN A;  2BG9 B;  2XYS A;  4F8H A;  2UZ6 A;  4QH5 A;  2YN6 A;  4HFD A;  5L47 A;  3WTK A;  4A97 A;  5J5I A;  5AFH A;  5HEG A;  4ZRU A;  4BFQ A;  5LG3 A;  3IGQ A;  4D01 A;  5BW2 A;  2XNU A;  2WZY A;  3RI5 A;  4NPP A;  3WTM A;  3TLW A;  4Z91 A;  3SQ6 A;  3P4W A;  2XQ8 A;  3UU4 A;  3P50 A;  4UM3 P;  5HCM A;  1I9B A;  4UY2 A;  5BRX A;  4QAC A;  2Y54 A;  4NZB A;  4XHE A;  2WNC A;  2XQ5 A;  3ZDG A;  2BYR A;  3TLT A;  2X00 D;  5IUX A;  5LXB A;  2BYN A;  2QC1 B;  3U8L A;  4HQP A;  3UU5 A;  4LMK A;  2XYT A;  3PMZ A;  2WNL A;  4BQT A;  5CFB A;  3RQU A;  3WTL A;  3UU6 A;  3U8J A;  3EI0 A;  4ZZB A;  4UM1 A;  3TLU A;  2ZJU A;  2YKS A;  4AFG A;  4TNW A;  2Y57 A;  4ZZC A;  4EZ1 A;  2BYQ A;  4HFB A;  4ZK1 A;  2VL0 A;  3ZKR A;  4DBM A;  2XQ9 A;  3JAF A;  3RIF A;  3WTJ A;  2X00 A;  2BG9 E;  5CO5 A;  5J5F A;  4WV9 A;  4A98 A;  4IL4 A;  4X5T A;  5HEH A;  4TWF A;  3ZDH A;  5AFM B;  2Y7Y A;  1UV6 A;  4IL9 A;  3C84 A;  2BR8 A;  2XNV A;  4COF A;  5KE4 A;  2BG9 C;  3WTN A;  5HEJ A;  3UQ4 A;  4HFI A;  3WTO A;  2XZ6 A;  4HFC A;  2BR7 A;  2XQ6 A;  3LSV A;  3U8K A;  4ZJT A;  4QAB A;  2BG9 A;  2XQA A;  4ZJS A;  3TLS A;  2WN9 A;  5J0Z A;  3WTI A;  5HCJ A;  3WIP A;  5AIN A;  3C79 A;  5BP0 A;  2BYS A;  1UX2 A;  3UU8 A;  5AFL A;  2XQ7 A;  3EHZ A;  4AFH A;  4AFT A;  2PGZ A;  3U8M A;  3UUB A;  4TWD A;  4LMJ A;  5KZU A;  4IRE A;  5AFK A;  4PIR A;  4QAA A;  5TVC A; 
#chains in the Genus database with same CATH homology
 4LML A;  3SQ9 A;  2W8G A;  4QH1 A;  5L4H A;  4B5D A;  3SH1 A;  4HFH A;  3JAE A;  2Y58 A;  4ILC A;  4QH4 A;  3UQ7 A;  2W8F A;  5SYO A;  4UXU A;  1UW6 A;  4XK9 A;  4ILA A;  2XQ3 A;  5L4E A;  2BYP A;  2YMD A;  5J5G A;  3RHW A;  3RIA A;  5AFJ A;  3EAM A;  4HFE A;  4UM3 S;  4TWH A;  5JME A;  2XZ5 A;  2ZJV A;  5J5H A;  4TNV A;  3UU3 A;  4ALX A;  2Y56 A;  2YME A;  3SIO A;  4UM3 A;  2C9T A;  5HEO A;  3TLV A;  2PH9 A;  5FJV A;  2BJ0 A;  3RQW A;  3PEO A;  3WTH A;  4Z90 A;  4ILB A;  3T4M A;  2XNT A;  3GUA A;  5HEU A;  2XQ4 A;  2WNJ A;  3JAD A;  4FRR A;  4ZK4 A;  4ZR6 A;  3U8N A;  2YOE A;  5AFM A;  5AFN A;  2BG9 B;  2XYS A;  4F8H A;  2UZ6 A;  4QH5 A;  2YN6 A;  4HFD A;  5L47 A;  3WTK A;  4A97 A;  5J5I A;  5AFH A;  5HEG A;  4ZRU A;  4BFQ A;  5LG3 A;  3IGQ A;  4D01 A;  5BW2 A;  2XNU A;  2WZY A;  3RI5 A;  4NPP A;  3WTM A;  3TLW A;  4Z91 A;  3SQ6 A;  3P4W A;  2XQ8 A;  3UU4 A;  3P50 A;  4UM3 P;  5HCM A;  1I9B A;  4UY2 A;  5BRX A;  4QAC A;  2Y54 A;  4NZB A;  4XHE A;  2WNC A;  2XQ5 A;  3ZDG A;  2BYR A;  3TLT A;  2X00 D;  5IUX A;  5LXB A;  2BYN A;  2QC1 B;  3U8L A;  4HQP A;  3UU5 A;  4LMK A;  2XYT A;  3PMZ A;  2WNL A;  4BQT A;  5CFB A;  3RQU A;  3WTL A;  3UU6 A;  3U8J A;  3EI0 A;  4ZZB A;  4UM1 A;  3TLU A;  2ZJU A;  2YKS A;  4AFG A;  4TNW A;  2Y57 A;  4ZZC A;  4EZ1 A;  2BYQ A;  4HFB A;  4ZK1 A;  2VL0 A;  3ZKR A;  4DBM A;  2XQ9 A;  3JAF A;  3RIF A;  3WTJ A;  2X00 A;  2BG9 E;  5CO5 A;  5J5F A;  4WV9 A;  4A98 A;  4IL4 A;  4X5T A;  5HEH A;  4TWF A;  3ZDH A;  5AFM B;  2Y7Y A;  1UV6 A;  4IL9 A;  3C84 A;  2BR8 A;  2XNV A;  4COF A;  5KE4 A;  2BG9 C;  3WTN A;  5HEJ A;  3UQ4 A;  4HFI A;  3WTO A;  2XZ6 A;  4HFC A;  2BR7 A;  2XQ6 A;  3LSV A;  3U8K A;  4ZJT A;  4QAB A;  2BG9 A;  2XQA A;  4ZJS A;  3TLS A;  2WN9 A;  5J0Z A;  3WTI A;  5HCJ A;  3WIP A;  5AIN A;  3C79 A;  5BP0 A;  2BYS A;  1UX2 A;  3UU8 A;  5AFL A;  2XQ7 A;  3EHZ A;  4AFH A;  4AFT A;  2PGZ A;  3U8M A;  3UUB A;  4TWD A;  4LMJ A;  5KZU A;  4IRE A;  5AFK A;  4PIR A;  4QAA A;  5TVC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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