2YMEA

Crystal structure of a mutant binding protein (5htbp-achbp) in complex with granisetron
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
205
structure length
205
Chain Sequence
QANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKVDSSTNEVDLVYWERQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGVTCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Receptor
molecule keywords SOLUBLE ACETYLCHOLINE RECEPTOR
publication title Structural Basis of Ligand Recognition in 5-Ht3 Receptors.
pubmed doi rcsb
source organism Aplysia californica
total genus 47
structure length 205
sequence length 205
chains with identical sequence B, C, D, E, F, G, H, I, J
ec nomenclature
pdb deposition date 2012-10-09
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 2ymeA00
4ILAA 2WNJA 3JAEA 3IGQA 3U8LA 2Y57A 4X5TA 2VL0A 4DBMA 2WNCA 2BYRA 4AFHA 4AFTA 2XZ6A 4HFEA 2Y7YA 4ZRUA 2XYTA 4IL9A 5HCMA 3UQ7A 2X00D 2ZJVA 5AFJA 3C79A 2BYNA 4NPPA 2X00A 4ZK1A 4TWFA 4LMKA 3SQ9A 2Y58A 4Z90A 2XNTA 5AFMB 3WIPA 5LXBA 2WN9A 4QABA 3P4WA 4ILCA 4XHEA 3UU4A 3JADA 2XZ5A 2PGZA 4HFBA 3SQ6A 3UU6A 2QC1B 3WTLA 3C84A 3GUAA 2ZJUA 4HFDA 4QH4A 4UY2A 5HCJA 2XYSA 4FRRA 2W8GA 4QH5A 3SIOA 3WTHA 4NZBA 4LMJA 2Y54A 4TWHA 3U8NA 4D01A 5AFMA 5BP0A 2W8FA 4XK9A 5FJVA 3EHZA 5J5IA 3WTOA 4ALXA 4ZJTA 5BW2A 3WTNA 3TLTA 4ZR6A 5AFLA 3RIFA 5AFNA 4UM1A 1UV6A 5AFHA 4IL4A 4IREA 4HFIA 3U8MA 5CFBA 2BG9E 5SYOA 4UM3A 3UUBA 4PIRA 2XQ9A 2YMEA 4AFGA 5HEGA 2YKSA 3RIAA 4ILBA 2BYPA 4HFHA 4A98A 4ZZBA 4QH1A 2BR8A 5LG3A 4Z91A 4WV9A 2BR7A 3WTIA 4HFCA 3TLVA 3ZDHA 1I9BA 2XQ5A 3ZDGA 3T4MA 4UXUA 3TLUA 2Y56A 5KE4A 3EAMA 3U8JA 4TWDA 3U8KA 3WTJA 4COFA 4LMLA 5L4EA 2XQ7A 4BQTA 4EZ1A 2YMDA 5BRXA 4QAAA 4UM3P 3UQ4A 2WZYA 3LSVA 4QACA 3RHWA 2UZ6A 4ZJSA 5HEJA 5KZUA 5L47A 5CO5A 2XNUA 5JMEA 3TLSA 5HEOA 4A97A 5HEHA 2XQAA 3PEOA 3RQUA 2BYQA 3P50A 3TLWA 5AFKA 5J5FA 4ZK4A 2BG9A 5J0ZA 3RQWA 3WTMA 5J5HA 4F8HA 3PMZA 5J5GA 2XNVA 2BJ0A 5HEUA 3RI5A 2XQ4A 4B5DA 4TNVA 2C9TA 4HQPA 1UW6A 1UX2A 2PH9A 2BG9C 2XQ3A 5AINA 4BFQA 2BG9B 4TNWA 5TVCA 3UU5A 3EI0A 3WTKA 2XQ8A 2YOEA 2XQ6A 2WNLA 3SH1A 3UU8A 3UU3A 5IUXA 3ZKRA 3JAFA 4ZZCA 2YN6A 5L4HA 4UM3S 2BYSA
chains in the Genus database with same CATH superfamily
4ILAA 2WNJA 3JAEA 3IGQA 3U8LA 2Y57A 4X5TA 2VL0A 4DBMA 2WNCA 2BYRA 4AFHA 4AFTA 2XZ6A 4HFEA 2Y7YA 4ZRUA 2XYTA 4IL9A 5HCMA 3UQ7A 2X00D 2ZJVA 5AFJA 3C79A 2BYNA 4NPPA 2X00A 4ZK1A 4TWFA 4LMKA 3SQ9A 2Y58A 4Z90A 2XNTA 5AFMB 3WIPA 5LXBA 2WN9A 4QABA 3P4WA 4ILCA 4XHEA 3UU4A 3JADA 2XZ5A 2PGZA 4HFBA 3SQ6A 3UU6A 2QC1B 3WTLA 3C84A 3GUAA 2ZJUA 4HFDA 4QH4A 4UY2A 5HCJA 2XYSA 4FRRA 2W8GA 4QH5A 3SIOA 3WTHA 4NZBA 4LMJA 2Y54A 4TWHA 3U8NA 4D01A 5AFMA 5BP0A 2W8FA 4XK9A 5FJVA 3EHZA 5J5IA 3WTOA 4ALXA 4ZJTA 5BW2A 3WTNA 3TLTA 4ZR6A 5AFLA 3RIFA 5AFNA 4UM1A 1UV6A 5AFHA 4IL4A 4IREA 4HFIA 3U8MA 5CFBA 2BG9E 5SYOA 4UM3A 3UUBA 4PIRA 2XQ9A 2YMEA 4AFGA 5HEGA 2YKSA 3RIAA 4ILBA 2BYPA 4HFHA 4A98A 4ZZBA 4QH1A 2BR8A 5LG3A 4Z91A 4WV9A 2BR7A 3WTIA 4HFCA 3TLVA 3ZDHA 1I9BA 2XQ5A 3ZDGA 3T4MA 4UXUA 3TLUA 2Y56A 5KE4A 3EAMA 3U8JA 4TWDA 3U8KA 3WTJA 4COFA 4LMLA 5L4EA 2XQ7A 4BQTA 4EZ1A 2YMDA 5BRXA 4QAAA 4UM3P 3UQ4A 2WZYA 3LSVA 4QACA 3RHWA 2UZ6A 4ZJSA 5HEJA 5KZUA 5L47A 5CO5A 2XNUA 5JMEA 3TLSA 5HEOA 4A97A 5HEHA 2XQAA 3PEOA 3RQUA 2BYQA 3P50A 3TLWA 5AFKA 5J5FA 4ZK4A 2BG9A 5J0ZA 3RQWA 3WTMA 5J5HA 4F8HA 3PMZA 5J5GA 2XNVA 2BJ0A 5HEUA 3RI5A 2XQ4A 4B5DA 4TNVA 2C9TA 4HQPA 1UW6A 1UX2A 2PH9A 2BG9C 2XQ3A 5AINA 4BFQA 2BG9B 4TNWA 5TVCA 3UU5A 3EI0A 3WTKA 2XQ8A 2YOEA 2XQ6A 2WNLA 3SH1A 3UU8A 3UU3A 5IUXA 3ZKRA 3JAFA 4ZZCA 2YN6A 5L4HA 4UM3S 2BYSA
chains in the Genus database with same CATH topology
4ILAA 2WNJA 3JAEA 3IGQA 3U8LA 2Y57A 4X5TA 2VL0A 4DBMA 2WNCA 2BYRA 4AFHA 4AFTA 2XZ6A 4HFEA 2Y7YA 4ZRUA 2XYTA 4IL9A 5HCMA 3UQ7A 2X00D 2ZJVA 5AFJA 3C79A 2BYNA 4NPPA 2X00A 4ZK1A 4TWFA 4LMKA 3SQ9A 2Y58A 4Z90A 2XNTA 5AFMB 3WIPA 5LXBA 2WN9A 4QABA 3P4WA 4ILCA 4XHEA 3UU4A 3JADA 2XZ5A 2PGZA 4HFBA 3SQ6A 3UU6A 2QC1B 3WTLA 3C84A 3GUAA 2ZJUA 4HFDA 4QH4A 4UY2A 5HCJA 2XYSA 4FRRA 2W8GA 4QH5A 3SIOA 3WTHA 4NZBA 4LMJA 2Y54A 4TWHA 3U8NA 4D01A 5AFMA 5BP0A 2W8FA 4XK9A 5FJVA 3EHZA 5J5IA 3WTOA 4ALXA 4ZJTA 5BW2A 3WTNA 3TLTA 4ZR6A 5AFLA 3RIFA 5AFNA 4UM1A 1UV6A 5AFHA 4IL4A 4IREA 4HFIA 3U8MA 5CFBA 2BG9E 5SYOA 4UM3A 3UUBA 4PIRA 2XQ9A 2YMEA 4AFGA 5HEGA 2YKSA 3RIAA 4ILBA 2BYPA 4HFHA 4A98A 4ZZBA 4QH1A 2BR8A 5LG3A 4Z91A 4WV9A 2BR7A 3WTIA 4HFCA 3TLVA 3ZDHA 1I9BA 2XQ5A 3ZDGA 3T4MA 4UXUA 3TLUA 2Y56A 5KE4A 3EAMA 3U8JA 4TWDA 3U8KA 3WTJA 4COFA 4LMLA 5L4EA 2XQ7A 4BQTA 4EZ1A 2YMDA 5BRXA 4QAAA 4UM3P 3UQ4A 2WZYA 3LSVA 4QACA 3RHWA 2UZ6A 4ZJSA 5HEJA 5KZUA 5L47A 5CO5A 2XNUA 5JMEA 3TLSA 5HEOA 4A97A 5HEHA 2XQAA 3PEOA 3RQUA 2BYQA 3P50A 3TLWA 5AFKA 5J5FA 4ZK4A 2BG9A 5J0ZA 3RQWA 3WTMA 5J5HA 4F8HA 3PMZA 5J5GA 2XNVA 2BJ0A 5HEUA 3RI5A 2XQ4A 4B5DA 4TNVA 2C9TA 4HQPA 1UW6A 1UX2A 2PH9A 2BG9C 2XQ3A 5AINA 4BFQA 2BG9B 4TNWA 5TVCA 3UU5A 3EI0A 3WTKA 2XQ8A 2YOEA 2XQ6A 2WNLA 3SH1A 3UU8A 3UU3A 5IUXA 3ZKRA 3JAFA 4ZZCA 2YN6A 5L4HA 4UM3S 2BYSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ILA A;  2WNJ A;  3JAE A;  3IGQ A;  3U8L A;  2Y57 A;  4X5T A;  2VL0 A;  4DBM A;  2WNC A;  2BYR A;  4AFH A;  4AFT A;  2XZ6 A;  4HFE A;  2Y7Y A;  4ZRU A;  2XYT A;  4IL9 A;  5HCM A;  3UQ7 A;  2X00 D;  2ZJV A;  5AFJ A;  3C79 A;  2BYN A;  4NPP A;  2X00 A;  4ZK1 A;  4TWF A;  4LMK A;  3SQ9 A;  2Y58 A;  4Z90 A;  2XNT A;  5AFM B;  3WIP A;  5LXB A;  2WN9 A;  4QAB A;  3P4W A;  4ILC A;  4XHE A;  3UU4 A;  3JAD A;  2XZ5 A;  2PGZ A;  4HFB A;  3SQ6 A;  3UU6 A;  2QC1 B;  3WTL A;  3C84 A;  3GUA A;  2ZJU A;  4HFD A;  4QH4 A;  4UY2 A;  5HCJ A;  2XYS A;  4FRR A;  2W8G A;  4QH5 A;  3SIO A;  3WTH A;  4NZB A;  4LMJ A;  2Y54 A;  4TWH A;  3U8N A;  4D01 A;  5AFM A;  5BP0 A;  2W8F A;  4XK9 A;  5FJV A;  3EHZ A;  5J5I A;  3WTO A;  4ALX A;  4ZJT A;  5BW2 A;  3WTN A;  3TLT A;  4ZR6 A;  5AFL A;  3RIF A;  5AFN A;  4UM1 A;  1UV6 A;  5AFH A;  4IL4 A;  4IRE A;  4HFI A;  3U8M A;  5CFB A;  2BG9 E;  5SYO A;  4UM3 A;  3UUB A;  4PIR A;  2XQ9 A;  2YME A;  4AFG A;  5HEG A;  2YKS A;  3RIA A;  4ILB A;  2BYP A;  4HFH A;  4A98 A;  4ZZB A;  4QH1 A;  2BR8 A;  5LG3 A;  4Z91 A;  4WV9 A;  2BR7 A;  3WTI A;  4HFC A;  3TLV A;  3ZDH A;  1I9B A;  2XQ5 A;  3ZDG A;  3T4M A;  4UXU A;  3TLU A;  2Y56 A;  5KE4 A;  3EAM A;  3U8J A;  4TWD A;  3U8K A;  3WTJ A;  4COF A;  4LML A;  5L4E A;  2XQ7 A;  4BQT A;  4EZ1 A;  2YMD A;  5BRX A;  4QAA A;  4UM3 P;  3UQ4 A;  2WZY A;  3LSV A;  4QAC A;  3RHW A;  2UZ6 A;  4ZJS A;  5HEJ A;  5KZU A;  5L47 A;  5CO5 A;  2XNU A;  5JME A;  3TLS A;  5HEO A;  4A97 A;  5HEH A;  2XQA A;  3PEO A;  3RQU A;  2BYQ A;  3P50 A;  3TLW A;  5AFK A;  5J5F A;  4ZK4 A;  2BG9 A;  5J0Z A;  3RQW A;  3WTM A;  5J5H A;  4F8H A;  3PMZ A;  5J5G A;  2XNV A;  2BJ0 A;  5HEU A;  3RI5 A;  2XQ4 A;  4B5D A;  4TNV A;  2C9T A;  4HQP A;  1UW6 A;  1UX2 A;  2PH9 A;  2BG9 C;  2XQ3 A;  5AIN A;  4BFQ A;  2BG9 B;  4TNW A;  5TVC A;  3UU5 A;  3EI0 A;  3WTK A;  2XQ8 A;  2YOE A;  2XQ6 A;  2WNL A;  3SH1 A;  3UU8 A;  3UU3 A;  5IUX A;  3ZKR A;  3JAF A;  4ZZC A;  2YN6 A;  5L4H A;  4UM3 S;  2BYS A; 
#chains in the Genus database with same CATH topology
 4ILA A;  2WNJ A;  3JAE A;  3IGQ A;  3U8L A;  2Y57 A;  4X5T A;  2VL0 A;  4DBM A;  2WNC A;  2BYR A;  4AFH A;  4AFT A;  2XZ6 A;  4HFE A;  2Y7Y A;  4ZRU A;  2XYT A;  4IL9 A;  5HCM A;  3UQ7 A;  2X00 D;  2ZJV A;  5AFJ A;  3C79 A;  2BYN A;  4NPP A;  2X00 A;  4ZK1 A;  4TWF A;  4LMK A;  3SQ9 A;  2Y58 A;  4Z90 A;  2XNT A;  5AFM B;  3WIP A;  5LXB A;  2WN9 A;  4QAB A;  3P4W A;  4ILC A;  4XHE A;  3UU4 A;  3JAD A;  2XZ5 A;  2PGZ A;  4HFB A;  3SQ6 A;  3UU6 A;  2QC1 B;  3WTL A;  3C84 A;  3GUA A;  2ZJU A;  4HFD A;  4QH4 A;  4UY2 A;  5HCJ A;  2XYS A;  4FRR A;  2W8G A;  4QH5 A;  3SIO A;  3WTH A;  4NZB A;  4LMJ A;  2Y54 A;  4TWH A;  3U8N A;  4D01 A;  5AFM A;  5BP0 A;  2W8F A;  4XK9 A;  5FJV A;  3EHZ A;  5J5I A;  3WTO A;  4ALX A;  4ZJT A;  5BW2 A;  3WTN A;  3TLT A;  4ZR6 A;  5AFL A;  3RIF A;  5AFN A;  4UM1 A;  1UV6 A;  5AFH A;  4IL4 A;  4IRE A;  4HFI A;  3U8M A;  5CFB A;  2BG9 E;  5SYO A;  4UM3 A;  3UUB A;  4PIR A;  2XQ9 A;  2YME A;  4AFG A;  5HEG A;  2YKS A;  3RIA A;  4ILB A;  2BYP A;  4HFH A;  4A98 A;  4ZZB A;  4QH1 A;  2BR8 A;  5LG3 A;  4Z91 A;  4WV9 A;  2BR7 A;  3WTI A;  4HFC A;  3TLV A;  3ZDH A;  1I9B A;  2XQ5 A;  3ZDG A;  3T4M A;  4UXU A;  3TLU A;  2Y56 A;  5KE4 A;  3EAM A;  3U8J A;  4TWD A;  3U8K A;  3WTJ A;  4COF A;  4LML A;  5L4E A;  2XQ7 A;  4BQT A;  4EZ1 A;  2YMD A;  5BRX A;  4QAA A;  4UM3 P;  3UQ4 A;  2WZY A;  3LSV A;  4QAC A;  3RHW A;  2UZ6 A;  4ZJS A;  5HEJ A;  5KZU A;  5L47 A;  5CO5 A;  2XNU A;  5JME A;  3TLS A;  5HEO A;  4A97 A;  5HEH A;  2XQA A;  3PEO A;  3RQU A;  2BYQ A;  3P50 A;  3TLW A;  5AFK A;  5J5F A;  4ZK4 A;  2BG9 A;  5J0Z A;  3RQW A;  3WTM A;  5J5H A;  4F8H A;  3PMZ A;  5J5G A;  2XNV A;  2BJ0 A;  5HEU A;  3RI5 A;  2XQ4 A;  4B5D A;  4TNV A;  2C9T A;  4HQP A;  1UW6 A;  1UX2 A;  2PH9 A;  2BG9 C;  2XQ3 A;  5AIN A;  4BFQ A;  2BG9 B;  4TNW A;  5TVC A;  3UU5 A;  3EI0 A;  3WTK A;  2XQ8 A;  2YOE A;  2XQ6 A;  2WNL A;  3SH1 A;  3UU8 A;  3UU3 A;  5IUX A;  3ZKR A;  3JAF A;  4ZZC A;  2YN6 A;  5L4H A;  4UM3 S;  2BYS A; 
#chains in the Genus database with same CATH homology
 4ILA A;  2WNJ A;  3JAE A;  3IGQ A;  3U8L A;  2Y57 A;  4X5T A;  2VL0 A;  4DBM A;  2WNC A;  2BYR A;  4AFH A;  4AFT A;  2XZ6 A;  4HFE A;  2Y7Y A;  4ZRU A;  2XYT A;  4IL9 A;  5HCM A;  3UQ7 A;  2X00 D;  2ZJV A;  5AFJ A;  3C79 A;  2BYN A;  4NPP A;  2X00 A;  4ZK1 A;  4TWF A;  4LMK A;  3SQ9 A;  2Y58 A;  4Z90 A;  2XNT A;  5AFM B;  3WIP A;  5LXB A;  2WN9 A;  4QAB A;  3P4W A;  4ILC A;  4XHE A;  3UU4 A;  3JAD A;  2XZ5 A;  2PGZ A;  4HFB A;  3SQ6 A;  3UU6 A;  2QC1 B;  3WTL A;  3C84 A;  3GUA A;  2ZJU A;  4HFD A;  4QH4 A;  4UY2 A;  5HCJ A;  2XYS A;  4FRR A;  2W8G A;  4QH5 A;  3SIO A;  3WTH A;  4NZB A;  4LMJ A;  2Y54 A;  4TWH A;  3U8N A;  4D01 A;  5AFM A;  5BP0 A;  2W8F A;  4XK9 A;  5FJV A;  3EHZ A;  5J5I A;  3WTO A;  4ALX A;  4ZJT A;  5BW2 A;  3WTN A;  3TLT A;  4ZR6 A;  5AFL A;  3RIF A;  5AFN A;  4UM1 A;  1UV6 A;  5AFH A;  4IL4 A;  4IRE A;  4HFI A;  3U8M A;  5CFB A;  2BG9 E;  5SYO A;  4UM3 A;  3UUB A;  4PIR A;  2XQ9 A;  2YME A;  4AFG A;  5HEG A;  2YKS A;  3RIA A;  4ILB A;  2BYP A;  4HFH A;  4A98 A;  4ZZB A;  4QH1 A;  2BR8 A;  5LG3 A;  4Z91 A;  4WV9 A;  2BR7 A;  3WTI A;  4HFC A;  3TLV A;  3ZDH A;  1I9B A;  2XQ5 A;  3ZDG A;  3T4M A;  4UXU A;  3TLU A;  2Y56 A;  5KE4 A;  3EAM A;  3U8J A;  4TWD A;  3U8K A;  3WTJ A;  4COF A;  4LML A;  5L4E A;  2XQ7 A;  4BQT A;  4EZ1 A;  2YMD A;  5BRX A;  4QAA A;  4UM3 P;  3UQ4 A;  2WZY A;  3LSV A;  4QAC A;  3RHW A;  2UZ6 A;  4ZJS A;  5HEJ A;  5KZU A;  5L47 A;  5CO5 A;  2XNU A;  5JME A;  3TLS A;  5HEO A;  4A97 A;  5HEH A;  2XQA A;  3PEO A;  3RQU A;  2BYQ A;  3P50 A;  3TLW A;  5AFK A;  5J5F A;  4ZK4 A;  2BG9 A;  5J0Z A;  3RQW A;  3WTM A;  5J5H A;  4F8H A;  3PMZ A;  5J5G A;  2XNV A;  2BJ0 A;  5HEU A;  3RI5 A;  2XQ4 A;  4B5D A;  4TNV A;  2C9T A;  4HQP A;  1UW6 A;  1UX2 A;  2PH9 A;  2BG9 C;  2XQ3 A;  5AIN A;  4BFQ A;  2BG9 B;  4TNW A;  5TVC A;  3UU5 A;  3EI0 A;  3WTK A;  2XQ8 A;  2YOE A;  2XQ6 A;  2WNL A;  3SH1 A;  3UU8 A;  3UU3 A;  5IUX A;  3ZKR A;  3JAF A;  4ZZC A;  2YN6 A;  5L4H A;  4UM3 S;  2BYS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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