2YNKA

Wzi, an outer membrane protein involved in group 1 capsule assembly in escherichia coli, is a carbohydrate binding beta-barrel
Total Genus 130
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
130
sequence length
456
structure length
441
Chain Sequence
AGLVVNDNDLRNDLAWLSDRGVIHLSLSTWPLSQEEIARALKKAKPSYSSEQVVLARINQRLSALKADFRVTGYTSTDQPGTPQGFGQTQPADNSLGLAFNNSGEWWDVHLQGNVEGGERISNGSRFNANGAYGAVKFWNQWLSFGQVPQWWGPGYEGSLIRGDAMRPMTGFLMQRAEQAAPETWWLRWVGPWQYQISASQMNQYNAVPHAKIIGGRFTFSPIQSLELGASRIMQWGGKGRPESLSNFWDGGNQLAGFDFKFKLEPTLGWPVSFYGQMIGEDESGFLPSANMFLGGIEGHHGWGKDAVNWYLEAHDTRTNMSRTNYSYTHHIYKDGYYQQGYPLGDAMGGDGQLVAGKVELITEDNQRWSTRLVYAKVNPENQSINKAFPHADTLKGIQLGWSGDVYQSVRLNTSLWYTNANNSDSDDVGASAGIEIPFSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Wzi is an Outer Membrane Lectin that Underpins Group 1 Capsule Assembly in Escherichia Coli.
pubmed doi rcsb
molecule keywords WZI
molecule tags Membrane protein
total genus 130
structure length 441
sequence length 456
ec nomenclature
pdb deposition date 2012-10-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14052 Caps_assemb_Wzi Capsule assembly protein Wzi
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.130 Mainly Beta Beta Barrel Porin Porin 2ynkA00
2YNKA
chains in the Genus database with same CATH superfamily
1BXWA 1Q9FA 2XG6A 5G26A 4E1SA 2QTKA 4BUMX 4UB6O 3T0SA 2KZ7A 3LK42 2W80C 4KR4A 3POXA 5GTIO 3VZUX 1BH3A 2LHFA 4AFKA 4AKRA 5AFUL 4XNLA 1S5LO 2KDYA 2R4LA 3HW9A 4C69X 5AFUK 1GFPA 1ZHXA 3K19A 1THQA 4GCPA 4LSIA 4PUXA 4D65A 2ODJA 1GFMA 5DL6A 2Y7SA 3AA1A 3SZVA 2M06A 3POUA 4FZNA 4IL6O 4G76A 3T20A 4O3XB 1HXXA 2XTRA 4O3WA 1QJ9A 4AYDC 7PRNA 3WI5A 5EE2A 3G7GA 3AAEB 5H2FO 2Y0KA 1MPFA 2XMXA 3VE1A 2R89A 3T24A 3PQSA 4N59A 5DL8A 5G3AA 3VY9X 3AA6B 3PORA 4JFBA 5KAIO 4LSEA 3DA3A 3LK3B 2K4TA 5D5DA 3BRYA 3AAAA 4RLBA 3HOEA 4RL9A 4UB8O 4CTDA 3LK41 4AUIA 3VZWX 1PRNA 2X9KA 3EMNX 2Y0HA 4QQ1A 4JCHA 3V8UA 4B61A 2LFUA 3O0EA 4RJXA 1T1LA 2O4VA 4O4XA 3PGSA 6PRNA 3WI4A 2FGQX 4N74A 2JQYA 4N75A 1MM5A 3AA7A 3DWOX 5T5FA 3QRAA 1HXUA 4D64A 5JDPA 3LK2A 1ZHTA 2ZLDA 4GF4A 3AA6A 2IWWA 4C4VA 2MHLA 1H6S1 3DWNA 1P4TA 2R4NA 3LK3A 4RLCA 5PRNA 2N2LA 2YNKA 4PR7A 3A0HO 3SY9A 4E1TA 5B66O 3KVDD 1G90A 3JTYA 2R4PA 1YS5A 2XTQA 5IYUA 4GCQA 4N58A 3SYSA 2Y0LA 2KC0A 2W81C 3VY8X 2YPVA 4FRTA 2K0LA 4FT6A 4XNKA 1GFQA 5G38A 3PQUA 3HOLA 2KXPB 4K3BA 4AYNA 4O3ZA 2FGRA 4O3YA 1ZHZA 3BRZA 3GP6A 4G75A 3UPGA 3NSGA 4LSHA 3SY7A 4AYMC 1OSMA 2KZ7B 4FMSA 3JCUO 4AKRB 2ZFGA 4FQEA 1QJPA 3AAEA 2F1TA 1HXTA 2N2MA 2PORA 4KR8A 1GFNA 4K3CA 3UU2A 2R4OA 4GCSA 4D5UA 3AA1B 4FSOA 3HWBA 1OPFA 3VZTX 3WU2O 1QJ8A 4FZMA 5E79O 4AKMA 2PRNA 3TZGA 1ORMA 2KXPA 4O4UA 5B5EO 4FZLA 4KRAA 2J4UP 2JMMA 3DA4A 1Q9GA 3BS0A 3VE2A 1IZNB 4Z3TA 2GE4A 3A0BO 5TISO 1MM4A 5FVNA 5GV0A 3NJTA 2XE3A 4AYEC 3AA0B 3SYBA 1ZHYA 2WJRA 4U9CA 3A2SX 3POQA 5G39A 2F1CX 3AAAB 4FUVA 2R8AA 3PGUA 3QRCA 2AXTO 4FRXA 2Y2XA 2IWVA 4GHBA 3DZMA 5GTHO 4F4BA 4FESA 2WJQA 2XE5A 4RJWA 3SZDA 5ADXL 2F1VA 2J1NA 2MNHA 2X27X 3PRNA 8PRNA 4FSPA 3RBHA 1ZHWA 4C00A 5KAFO 1E54A 5ADXK 2ERVA 4FOZA 1IZNA 2XE1A 4LSFA 3FYXA 3UAQA 3AA7B 5DL5A 1T16A 2M07A 2XE2A 3LK2B 1GFOA 1PHOA 4PJ0O 1BT9A 3AA0A 3KZIO 4AYID 4O49A 4AZLA 4C4VB 3PF1A 2WVPA 3C5OA 5DL7A 3PGRA 2R88A 2OMFA
chains in the Genus database with same CATH topology
1BXWA 1Q9FA 2XG6A 5G26A 4E1SA 2QTKA 4BUMX 3T0SA 2KZ7A 3LK42 2W80C 4KR4A 3POXA 3VZUX 4AFKA 1BH3A 2LHFA 4AKRA 5AFUL 4XNLA 3HW9A 2KDYA 5AFUK 4C69X 1GFPA 1ZHXA 3K19A 1THQA 4GCPA 4LSIA 4PUXA 4D65A 2ODJA 1GFMA 5DL6A 2Y7SA 3AA1A 3SZVA 2M06A 3POUA 4FZNA 3T20A 4G76A 4O3XB 1HXXA 2XTRA 4O3WA 1QJ9A 4AYDC 7PRNA 3WI5A 5EE2A 3G7GA 3AAEB 2Y0KA 1MPFA 2XMXA 3VE1A 3T24A 3PQSA 4N59A 5DL8A 3AA6B 3PORA 4JFBA 4LSEA 3DA3A 3LK3B 2K4TA 5D5DA 3AAAA 4RLBA 3HOEA 4RL9A 3LK41 4AUIA 3VZWX 1PRNA 4QQ1A 3EMNX 2Y0HA 4JCHA 3V8UA 4B61A 2LFUA 3O0EA 4RJXA 2O4VA 4O4XA 6PRNA 3WI4A 2FGQX 1MM5A 3AA7A 5T5FA 3QRAA 1HXUA 4D64A 5JDPA 3LK2A 1ZHTA 2ZLDA 4GF4A 3AA6A 2MHLA 1H6S1 1P4TA 3LK3A 4RLCA 5PRNA 3UAQA 2N2LA 2YNKA 3SY9A 4E1TA 3KVDD 1G90A 3JTYA 2XTQA 1YS5A 5IYUA 4GCQA 4N58A 3SYSA 2Y0LA 2KC0A 2W81C 3VY8X 2YPVA 4FRTA 2K0LA 4FT6A 4XNKA 1GFQA 4AYNA 3PQUA 3HOLA 2KXPB 4O3ZA 2FGRA 4O3YA 1ZHZA 3GP6A 4G75A 3UPGA 3NSGA 4LSHA 3SY7A 4AYMC 1OSMA 2KZ7B 4FMSA 4AKRB 2ZFGA 1QJPA 3AAEA 2F1TA 1HXTA 2N2MA 2PORA 4KR8A 1GFNA 3UU2A 4GCSA 4D5UA 3AA1B 4FSOA 3HWBA 1OPFA 3VZTX 1QJ8A 4FZMA 4AKMA 2PRNA 3TZGA 1ORMA 2KXPA 4O4UA 4FZLA 4KRAA 2J4UP 2JMMA 3DA4A 1Q9GA 3VE2A 1IZNB 4Z3TA 2GE4A 1MM4A 5FVNA 5GV0A 2XE3A 4AYEC 3AA0B 3SYBA 1ZHYA 4U9CA 3A2SX 3POQA 3AAAB 4FUVA 3QRCA 4FRXA 2Y2XA 4GHBA 4F4BA 4FESA 2XE5A 4RJWA 3SZDA 5ADXL 2F1VA 2J1NA 2MNHA 2X27X 3PRNA 8PRNA 4FSPA 3RBHA 1ZHWA 5ADXK 1E54A 2ERVA 4FOZA 1IZNA 2XE1A 4LSFA 3FYXA 3AA7B 5DL5A 2M07A 2XE2A 3LK2B 1GFOA 1PHOA 4AYID 1BT9A 3AA0A 4O49A 4AZLA 3C5OA 5DL7A 3VY9X 2OMFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YNK A; 
#chains in the Genus database with same CATH topology
 1BXW A;  1Q9F A;  2XG6 A;  5G26 A;  4E1S A;  2QTK A;  4BUM X;  4UB6 O;  3T0S A;  2KZ7 A;  3LK4 2;  2W80 C;  4KR4 A;  3POX A;  5GTI O;  3VZU X;  1BH3 A;  2LHF A;  4AFK A;  4AKR A;  5AFU L;  4XNL A;  1S5L O;  2KDY A;  2R4L A;  3HW9 A;  4C69 X;  5AFU K;  1GFP A;  1ZHX A;  3K19 A;  1THQ A;  4GCP A;  4LSI A;  4PUX A;  4D65 A;  2ODJ A;  1GFM A;  5DL6 A;  2Y7S A;  3AA1 A;  3SZV A;  2M06 A;  3POU A;  4FZN A;  4IL6 O;  4G76 A;  3T20 A;  4O3X B;  1HXX A;  2XTR A;  4O3W A;  1QJ9 A;  4AYD C;  7PRN A;  3WI5 A;  5EE2 A;  3G7G A;  3AAE B;  5H2F O;  2Y0K A;  1MPF A;  2XMX A;  3VE1 A;  2R89 A;  3T24 A;  3PQS A;  4N59 A;  5DL8 A;  5G3A A;  3VY9 X;  3AA6 B;  3POR A;  4JFB A;  5KAI O;  4LSE A;  3DA3 A;  3LK3 B;  2K4T A;  5D5D A;  3BRY A;  3AAA A;  4RLB A;  3HOE A;  4RL9 A;  4UB8 O;  4CTD A;  3LK4 1;  4AUI A;  3VZW X;  1PRN A;  2X9K A;  3EMN X;  2Y0H A;  4QQ1 A;  4JCH A;  3V8U A;  4B61 A;  2LFU A;  3O0E A;  4RJX A;  1T1L A;  2O4V A;  4O4X A;  3PGS A;  6PRN A;  3WI4 A;  2FGQ X;  4N74 A;  2JQY A;  4N75 A;  1MM5 A;  3AA7 A;  3DWO X;  5T5F A;  3QRA A;  1HXU A;  4D64 A;  5JDP A;  3LK2 A;  1ZHT A;  2ZLD A;  4GF4 A;  3AA6 A;  2IWW A;  4C4V A;  2MHL A;  1H6S 1;  3DWN A;  1P4T A;  2R4N A;  3LK3 A;  4RLC A;  5PRN A;  2N2L A;  2YNK A;  4PR7 A;  3A0H O;  3SY9 A;  4E1T A;  5B66 O;  3KVD D;  1G90 A;  3JTY A;  2R4P A;  1YS5 A;  2XTQ A;  5IYU A;  4GCQ A;  4N58 A;  3SYS A;  2Y0L A;  2KC0 A;  2W81 C;  3VY8 X;  2YPV A;  4FRT A;  2K0L A;  4FT6 A;  4XNK A;  1GFQ A;  5G38 A;  3PQU A;  3HOL A;  2KXP B;  4K3B A;  4AYN A;  4O3Z A;  2FGR A;  4O3Y A;  1ZHZ A;  3BRZ A;  3GP6 A;  4G75 A;  3UPG A;  3NSG A;  4LSH A;  3SY7 A;  4AYM C;  1OSM A;  2KZ7 B;  4FMS A;  3JCU O;  4AKR B;  2ZFG A;  4FQE A;  1QJP A;  3AAE A;  2F1T A;  1HXT A;  2N2M A;  2POR A;  4KR8 A;  1GFN A;  4K3C A;  3UU2 A;  2R4O A;  4GCS A;  4D5U A;  3AA1 B;  4FSO A;  3HWB A;  1OPF A;  3VZT X;  3WU2 O;  1QJ8 A;  4FZM A;  5E79 O;  4AKM A;  2PRN A;  3TZG A;  1ORM A;  2KXP A;  4O4U A;  5B5E O;  4FZL A;  4KRA A;  2J4U P;  2JMM A;  3DA4 A;  1Q9G A;  3BS0 A;  3VE2 A;  1IZN B;  4Z3T A;  2GE4 A;  3A0B O;  5TIS O;  1MM4 A;  5FVN A;  5GV0 A;  3NJT A;  2XE3 A;  4AYE C;  3AA0 B;  3SYB A;  1ZHY A;  2WJR A;  4U9C A;  3A2S X;  3POQ A;  5G39 A;  2F1C X;  3AAA B;  4FUV A;  2R8A A;  3PGU A;  3QRC A;  2AXT O;  4FRX A;  2Y2X A;  2IWV A;  4GHB A;  3DZM A;  5GTH O;  4F4B A;  4FES A;  2WJQ A;  2XE5 A;  4RJW A;  3SZD A;  5ADX L;  2F1V A;  2J1N A;  2MNH A;  2X27 X;  3PRN A;  8PRN A;  4FSP A;  3RBH A;  1ZHW A;  4C00 A;  5KAF O;  1E54 A;  5ADX K;  2ERV A;  4FOZ A;  1IZN A;  2XE1 A;  4LSF A;  3FYX A;  3UAQ A;  3AA7 B;  5DL5 A;  1T16 A;  2M07 A;  2XE2 A;  3LK2 B;  1GFO A;  1PHO A;  4PJ0 O;  1BT9 A;  3AA0 A;  3KZI O;  4AYI D;  4O49 A;  4AZL A;  4C4V B;  3PF1 A;  2WVP A;  3C5O A;  5DL7 A;  3PGR A;  2R88 A;  2OMF A; 
#chains in the Genus database with same CATH homology
 1BXW A;  1Q9F A;  2XG6 A;  5G26 A;  4E1S A;  2QTK A;  4BUM X;  3T0S A;  2KZ7 A;  3LK4 2;  2W80 C;  4KR4 A;  3POX A;  3VZU X;  4AFK A;  1BH3 A;  2LHF A;  4AKR A;  5AFU L;  4XNL A;  3HW9 A;  2KDY A;  5AFU K;  4C69 X;  1GFP A;  1ZHX A;  3K19 A;  1THQ A;  4GCP A;  4LSI A;  4PUX A;  4D65 A;  2ODJ A;  1GFM A;  5DL6 A;  2Y7S A;  3AA1 A;  3SZV A;  2M06 A;  3POU A;  4FZN A;  3T20 A;  4G76 A;  4O3X B;  1HXX A;  2XTR A;  4O3W A;  1QJ9 A;  4AYD C;  7PRN A;  3WI5 A;  5EE2 A;  3G7G A;  3AAE B;  2Y0K A;  1MPF A;  2XMX A;  3VE1 A;  3T24 A;  3PQS A;  4N59 A;  5DL8 A;  3AA6 B;  3POR A;  4JFB A;  4LSE A;  3DA3 A;  3LK3 B;  2K4T A;  5D5D A;  3AAA A;  4RLB A;  3HOE A;  4RL9 A;  3LK4 1;  4AUI A;  3VZW X;  1PRN A;  4QQ1 A;  3EMN X;  2Y0H A;  4JCH A;  3V8U A;  4B61 A;  2LFU A;  3O0E A;  4RJX A;  2O4V A;  4O4X A;  6PRN A;  3WI4 A;  2FGQ X;  1MM5 A;  3AA7 A;  5T5F A;  3QRA A;  1HXU A;  4D64 A;  5JDP A;  3LK2 A;  1ZHT A;  2ZLD A;  4GF4 A;  3AA6 A;  2MHL A;  1H6S 1;  1P4T A;  3LK3 A;  4RLC A;  5PRN A;  3UAQ A;  2N2L A;  2YNK A;  3SY9 A;  4E1T A;  3KVD D;  1G90 A;  3JTY A;  2XTQ A;  1YS5 A;  5IYU A;  4GCQ A;  4N58 A;  3SYS A;  2Y0L A;  2KC0 A;  2W81 C;  3VY8 X;  2YPV A;  4FRT A;  2K0L A;  4FT6 A;  4XNK A;  1GFQ A;  4AYN A;  3PQU A;  3HOL A;  2KXP B;  4O3Z A;  2FGR A;  4O3Y A;  1ZHZ A;  3GP6 A;  4G75 A;  3UPG A;  3NSG A;  4LSH A;  3SY7 A;  4AYM C;  1OSM A;  2KZ7 B;  4FMS A;  4AKR B;  2ZFG A;  1QJP A;  3AAE A;  2F1T A;  1HXT A;  2N2M A;  2POR A;  4KR8 A;  1GFN A;  3UU2 A;  4GCS A;  4D5U A;  3AA1 B;  4FSO A;  3HWB A;  1OPF A;  3VZT X;  1QJ8 A;  4FZM A;  4AKM A;  2PRN A;  3TZG A;  1ORM A;  2KXP A;  4O4U A;  4FZL A;  4KRA A;  2J4U P;  2JMM A;  3DA4 A;  1Q9G A;  3VE2 A;  1IZN B;  4Z3T A;  2GE4 A;  1MM4 A;  5FVN A;  5GV0 A;  2XE3 A;  4AYE C;  3AA0 B;  3SYB A;  1ZHY A;  4U9C A;  3A2S X;  3POQ A;  3AAA B;  4FUV A;  3QRC A;  4FRX A;  2Y2X A;  4GHB A;  4F4B A;  4FES A;  2XE5 A;  4RJW A;  3SZD A;  5ADX L;  2F1V A;  2J1N A;  2MNH A;  2X27 X;  3PRN A;  8PRN A;  4FSP A;  3RBH A;  1ZHW A;  5ADX K;  1E54 A;  2ERV A;  4FOZ A;  1IZN A;  2XE1 A;  4LSF A;  3FYX A;  3AA7 B;  5DL5 A;  2M07 A;  2XE2 A;  3LK2 B;  1GFO A;  1PHO A;  4AYI D;  1BT9 A;  3AA0 A;  4O49 A;  4AZL A;  3C5O A;  5DL7 A;  3VY9 X;  2OMF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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