2YNKA

Wzi, an outer membrane protein involved in group 1 capsule assembly in escherichia coli, is a carbohydrate binding beta-barrel
Total Genus 130
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
130
sequence length
456
structure length
441
Chain Sequence
AGLVVNDNDLRNDLAWLSDRGVIHLSLSTWPLSQEEIARALKKAKPSYSSEQVVLARINQRLSALKADFRVTGYTSTDQPGTPQGFGQTQPADNSLGLAFNNSGEWWDVHLQGNVEGGERISNGSRFNANGAYGAVKFWNQWLSFGQVPQWWGPGYEGSLIRGDAMRPMTGFLMQRAEQAAPETWWLRWVGPWQYQISASQMNQYNAVPHAKIIGGRFTFSPIQSLELGASRIMQWGGKGRPESLSNFWDGGNQLAGFDFKFKLEPTLGWPVSFYGQMIGEDESGFLPSANMFLGGIEGHHGWGKDAVNWYLEAHDTRTNMSRTNYSYTHHIYKDGYYQQGYPLGDAMGGDGQLVAGKVELITEDNQRWSTRLVYAKVNPENQSINKAFPHADTLKGIQLGWSGDVYQSVRLNTSLWYTNANNSDSDDVGASAGIEIPFSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
publication title Wzi is an Outer Membrane Lectin that Underpins Group 1 Capsule Assembly in Escherichia Coli.
pubmed doi rcsb
molecule keywords WZI
total genus 130
structure length 441
sequence length 456
ec nomenclature
pdb deposition date 2012-10-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14052 Caps_assemb_Wzi Capsule assembly protein Wzi
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.130 Mainly Beta Beta Barrel Porin Porin 2ynkA00
2YNKA
chains in the Genus database with same CATH superfamily
4KR4A 4O4XA 3AAAA 3VE2A 3WI4A 2FGQX 2QTKA 4N58A 2PORA 2O4VA 1IZNB 1ZHZA 2MHLA 2X27X 4O3YA 5T5FA 2AXTO 3NSGA 3PQUA 3SY9A 1GFMA 2WJRA 4B61A 2Y0HA 2XTQA 4O3XB 3A2SX 4PR7A 4D64A 3KVDD 3HOLA 5G39A 3AA1A 2KDYA 3LK42 3VZUX 3LK2A 3LK2B 3UU2A 5ADXK 1HXTA 2XE3A 3G7GA 4K3CA 3DWNA 3PF1A 4O3ZA 2WVPA 2R4LA 2N2MA 4RJWA 1ZHTA 3PGSA 2N2LA 3A0HO 3LK3B 3BRZA 3VY9X 3PRNA 2XE1A 2Y7SA 5FVNA 2OMFA 2ODJA 2R88A 4O49A 2J4UP 1P4TA 1QJ9A 2JQYA 3PORA 3RBHA 4GF4A 2ZLDA 4FZLA 3DZMA 3DA4A 3VZWX 4U9CA 2XG6A 1GFQA 1MPFA 1MM4A 2K0LA 2F1VA 3AAAB 3A0BO 3BS0A 3DA3A 3HWBA 3JCUO 3PGUA 4O4UA 2KC0A 3VY8X 4AUIA 1ZHYA 5DL8A 3SYBA 4C69X 4LSHA 4GCPA 2ERVA 4PJ0O 2XTRA 5G26A 3SYSA 3KZIO 4AYEC 2PRNA 3AA1B 2K4TA 1GFPA 3NJTA 4RL9A 4LSEA 5AFUL 5IYUA 4FUVA 1PRNA 3LK41 7PRNA 3SY7A 4AFKA 5H2FO 5EE2A 2Y2XA 3FYXA 2F1CX 4FSOA 1HXXA 1THQA 3HOEA 4JFBA 3WU2O 1QJ8A 2W80C 4C4VA 1H6S1 6PRNA 4FQEA 5DL5A 1QJPA 2WJQA 1ZHWA 2MNHA 3AA7A 4AKMA 4E1SA 5TISO 4E1TA 2GE4A 1ORMA 3AA6A 3O0EA 4RJXA 4IL6O 2M06A 2KXPA 3POUA 3V8UA 3AA0A 3AA0B 1MM5A 4FZNA 3T24A 4C00A 2R4OA 3HW9A 4F4BA 4FSPA 4GCQA 5ADXL 2R4PA 5DL7A 4RLBA 4D5UA 2ZFGA 4FRXA 5B66O 3VZTX 2XE5A 3T20A 3WI5A 1GFNA 3BRYA 5D5DA 5GTHO 4AZLA 4AYMC 2Y0KA 1BH3A 3K19A 5G3AA 5KAFO 3SZDA 4AKRA 3POXA 5JDPA 3JTYA 4FOZA 4CTDA 3AAEA 4GHBA 4UB6O 4FESA 4O3WA 1T16A 1ZHXA 2JMMA 2R8AA 4G75A 2IWVA 4RLCA 5AFUK 2FGRA 5GV0A 4JCHA 3GP6A 4XNLA 2M07A 1YS5A 4C4VB 2KZ7A 4FRTA 3UAQA 1HXUA 5E79O 5G38A 2R89A 3AA7B 2J1NA 4K3BA 3AA6B 1BXWA 2W81C 4N75A 3T0SA 2KXPB 1IZNA 4Z3TA 2XE2A 4BUMX 3DWOX 3QRAA 2Y0LA 4UB8O 3PGRA 4AYDC 5KAIO 3TZGA 3VE1A 4AYNA 1S5LO 2F1TA 3PQSA 4KR8A 2IWWA 2LFUA 5PRNA 4GCSA 4XNKA 1OSMA 4N59A 8PRNA 5GTIO 1GFOA 1E54A 4AYID 5B5EO 4D65A 2LHFA 4AKRB 1T1LA 1Q9GA 5DL6A 3SZVA 3LK3A 2YPVA 2XMXA 3AAEB 4QQ1A 2YNKA 1Q9FA 1OPFA 4LSFA 4LSIA 2X9KA 2R4NA 3QRCA 4G76A 4PUXA 1G90A 1PHOA 3C5OA 2KZ7B 4KRAA 3UPGA 4N74A 4FMSA 4FZMA 3EMNX 4FT6A 1BT9A 3POQA
chains in the Genus database with same CATH topology
4KR4A 4O4XA 3AAAA 3VE2A 3WI4A 2FGQX 2QTKA 4N58A 2PORA 2O4VA 1IZNB 1ZHZA 2MHLA 2X27X 4O3YA 5T5FA 3NSGA 3PQUA 3SY9A 1GFMA 4B61A 2Y0HA 2XTQA 4O3XB 3A2SX 4D64A 3KVDD 3HOLA 3AA1A 2KDYA 3LK42 3VZUX 3LK2A 3LK2B 3UU2A 5ADXK 1HXTA 2XE3A 3G7GA 4O3ZA 2N2MA 4RJWA 1ZHTA 2N2LA 3LK3B 3VY9X 3PRNA 2XE1A 2Y7SA 5FVNA 2OMFA 2ODJA 4O49A 2J4UP 1P4TA 1QJ9A 3PORA 3RBHA 4GF4A 2ZLDA 4FZLA 3VZWX 3DA4A 4U9CA 2XG6A 1GFQA 1MPFA 1MM4A 2K0LA 2F1VA 3AAAB 3DA3A 3VY8X 3HWBA 3UPGA 4O4UA 2KC0A 4AUIA 1ZHYA 5DL8A 3SYBA 4C69X 4LSHA 4GCPA 2ERVA 2XTRA 5G26A 3SYSA 4AYEC 2PRNA 3AA1B 2K4TA 1GFPA 4RL9A 4LSEA 5AFUL 5IYUA 4FUVA 1PRNA 3LK41 7PRNA 3SY7A 4AFKA 5EE2A 2Y2XA 3FYXA 4FSOA 1HXXA 1THQA 3HOEA 4JFBA 1QJ8A 2W80C 1H6S1 6PRNA 5DL5A 1QJPA 1ZHWA 2MNHA 3AA7A 4AKMA 4E1SA 4E1TA 2GE4A 1ORMA 3AA6A 3O0EA 4RJXA 2M06A 2KXPA 3POUA 3V8UA 3AA0A 3AA0B 1MM5A 4FZNA 3T24A 3HW9A 4F4BA 4FSPA 4GCQA 5ADXL 4D5UA 5DL7A 4RLBA 2ZFGA 4FRXA 3VZTX 2XE5A 3T20A 3WI5A 1GFNA 5D5DA 4AZLA 4AYMC 2Y0KA 1BH3A 3K19A 3SZDA 4AKRA 3POXA 5JDPA 3JTYA 4FOZA 3AAEA 4GHBA 4FESA 4O3WA 1ZHXA 2JMMA 4G75A 4RLCA 5AFUK 5GV0A 2FGRA 4JCHA 3GP6A 4XNLA 2M07A 1YS5A 2KZ7A 4FRTA 3UAQA 1HXUA 3AA7B 2J1NA 3AA6B 1BXWA 2W81C 3T0SA 2KXPB 1IZNA 4Z3TA 2XE2A 4BUMX 3QRAA 2Y0LA 4AYDC 3TZGA 3VE1A 4AYNA 2F1TA 3PQSA 4KR8A 2LFUA 5PRNA 4GCSA 4XNKA 1OSMA 4N59A 8PRNA 1GFOA 1E54A 4AYID 4D65A 2LHFA 4AKRB 1Q9GA 5DL6A 3SZVA 3LK3A 2YPVA 2XMXA 3AAEB 4QQ1A 2YNKA 1Q9FA 1OPFA 4LSFA 4LSIA 1G90A 3QRCA 4G76A 4PUXA 1PHOA 3C5OA 2KZ7B 4KRAA 4FMSA 4FZMA 3EMNX 4FT6A 1BT9A 3POQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YNK A; 
#chains in the Genus database with same CATH topology
 4KR4 A;  4O4X A;  3AAA A;  3VE2 A;  3WI4 A;  2FGQ X;  2QTK A;  4N58 A;  2POR A;  2O4V A;  1IZN B;  1ZHZ A;  2MHL A;  2X27 X;  4O3Y A;  5T5F A;  2AXT O;  3NSG A;  3PQU A;  3SY9 A;  1GFM A;  2WJR A;  4B61 A;  2Y0H A;  2XTQ A;  4O3X B;  3A2S X;  4PR7 A;  4D64 A;  3KVD D;  3HOL A;  5G39 A;  3AA1 A;  2KDY A;  3LK4 2;  3VZU X;  3LK2 A;  3LK2 B;  3UU2 A;  5ADX K;  1HXT A;  2XE3 A;  3G7G A;  4K3C A;  3DWN A;  3PF1 A;  4O3Z A;  2WVP A;  2R4L A;  2N2M A;  4RJW A;  1ZHT A;  3PGS A;  2N2L A;  3A0H O;  3LK3 B;  3BRZ A;  3VY9 X;  3PRN A;  2XE1 A;  2Y7S A;  5FVN A;  2OMF A;  2ODJ A;  2R88 A;  4O49 A;  2J4U P;  1P4T A;  1QJ9 A;  2JQY A;  3POR A;  3RBH A;  4GF4 A;  2ZLD A;  4FZL A;  3DZM A;  3DA4 A;  3VZW X;  4U9C A;  2XG6 A;  1GFQ A;  1MPF A;  1MM4 A;  2K0L A;  2F1V A;  3AAA B;  3A0B O;  3BS0 A;  3DA3 A;  3HWB A;  3JCU O;  3PGU A;  4O4U A;  2KC0 A;  3VY8 X;  4AUI A;  1ZHY A;  5DL8 A;  3SYB A;  4C69 X;  4LSH A;  4GCP A;  2ERV A;  4PJ0 O;  2XTR A;  5G26 A;  3SYS A;  3KZI O;  4AYE C;  2PRN A;  3AA1 B;  2K4T A;  1GFP A;  3NJT A;  4RL9 A;  4LSE A;  5AFU L;  5IYU A;  4FUV A;  1PRN A;  3LK4 1;  7PRN A;  3SY7 A;  4AFK A;  5H2F O;  5EE2 A;  2Y2X A;  3FYX A;  2F1C X;  4FSO A;  1HXX A;  1THQ A;  3HOE A;  4JFB A;  3WU2 O;  1QJ8 A;  2W80 C;  4C4V A;  1H6S 1;  6PRN A;  4FQE A;  5DL5 A;  1QJP A;  2WJQ A;  1ZHW A;  2MNH A;  3AA7 A;  4AKM A;  4E1S A;  5TIS O;  4E1T A;  2GE4 A;  1ORM A;  3AA6 A;  3O0E A;  4RJX A;  4IL6 O;  2M06 A;  2KXP A;  3POU A;  3V8U A;  3AA0 A;  3AA0 B;  1MM5 A;  4FZN A;  3T24 A;  4C00 A;  2R4O A;  3HW9 A;  4F4B A;  4FSP A;  4GCQ A;  5ADX L;  2R4P A;  5DL7 A;  4RLB A;  4D5U A;  2ZFG A;  4FRX A;  5B66 O;  3VZT X;  2XE5 A;  3T20 A;  3WI5 A;  1GFN A;  3BRY A;  5D5D A;  5GTH O;  4AZL A;  4AYM C;  2Y0K A;  1BH3 A;  3K19 A;  5G3A A;  5KAF O;  3SZD A;  4AKR A;  3POX A;  5JDP A;  3JTY A;  4FOZ A;  4CTD A;  3AAE A;  4GHB A;  4UB6 O;  4FES A;  4O3W A;  1T16 A;  1ZHX A;  2JMM A;  2R8A A;  4G75 A;  2IWV A;  4RLC A;  5AFU K;  2FGR A;  5GV0 A;  4JCH A;  3GP6 A;  4XNL A;  2M07 A;  1YS5 A;  4C4V B;  2KZ7 A;  4FRT A;  3UAQ A;  1HXU A;  5E79 O;  5G38 A;  2R89 A;  3AA7 B;  2J1N A;  4K3B A;  3AA6 B;  1BXW A;  2W81 C;  4N75 A;  3T0S A;  2KXP B;  1IZN A;  4Z3T A;  2XE2 A;  4BUM X;  3DWO X;  3QRA A;  2Y0L A;  4UB8 O;  3PGR A;  4AYD C;  5KAI O;  3TZG A;  3VE1 A;  4AYN A;  1S5L O;  2F1T A;  3PQS A;  4KR8 A;  2IWW A;  2LFU A;  5PRN A;  4GCS A;  4XNK A;  1OSM A;  4N59 A;  8PRN A;  5GTI O;  1GFO A;  1E54 A;  4AYI D;  5B5E O;  4D65 A;  2LHF A;  4AKR B;  1T1L A;  1Q9G A;  5DL6 A;  3SZV A;  3LK3 A;  2YPV A;  2XMX A;  3AAE B;  4QQ1 A;  2YNK A;  1Q9F A;  1OPF A;  4LSF A;  4LSI A;  2X9K A;  2R4N A;  3QRC A;  4G76 A;  4PUX A;  1G90 A;  1PHO A;  3C5O A;  2KZ7 B;  4KRA A;  3UPG A;  4N74 A;  4FMS A;  4FZM A;  3EMN X;  4FT6 A;  1BT9 A;  3POQ A; 
#chains in the Genus database with same CATH homology
 4KR4 A;  4O4X A;  3AAA A;  3VE2 A;  3WI4 A;  2FGQ X;  2QTK A;  4N58 A;  2POR A;  2O4V A;  1IZN B;  1ZHZ A;  2MHL A;  2X27 X;  4O3Y A;  5T5F A;  3NSG A;  3PQU A;  3SY9 A;  1GFM A;  4B61 A;  2Y0H A;  2XTQ A;  4O3X B;  3A2S X;  4D64 A;  3KVD D;  3HOL A;  3AA1 A;  2KDY A;  3LK4 2;  3VZU X;  3LK2 A;  3LK2 B;  3UU2 A;  5ADX K;  1HXT A;  2XE3 A;  3G7G A;  4O3Z A;  2N2M A;  4RJW A;  1ZHT A;  2N2L A;  3LK3 B;  3VY9 X;  3PRN A;  2XE1 A;  2Y7S A;  5FVN A;  2OMF A;  2ODJ A;  4O49 A;  2J4U P;  1P4T A;  1QJ9 A;  3POR A;  3RBH A;  4GF4 A;  2ZLD A;  4FZL A;  3VZW X;  3DA4 A;  4U9C A;  2XG6 A;  1GFQ A;  1MPF A;  1MM4 A;  2K0L A;  2F1V A;  3AAA B;  3DA3 A;  3VY8 X;  3HWB A;  3UPG A;  4O4U A;  2KC0 A;  4AUI A;  1ZHY A;  5DL8 A;  3SYB A;  4C69 X;  4LSH A;  4GCP A;  2ERV A;  2XTR A;  5G26 A;  3SYS A;  4AYE C;  2PRN A;  3AA1 B;  2K4T A;  1GFP A;  4RL9 A;  4LSE A;  5AFU L;  5IYU A;  4FUV A;  1PRN A;  3LK4 1;  7PRN A;  3SY7 A;  4AFK A;  5EE2 A;  2Y2X A;  3FYX A;  4FSO A;  1HXX A;  1THQ A;  3HOE A;  4JFB A;  1QJ8 A;  2W80 C;  1H6S 1;  6PRN A;  5DL5 A;  1QJP A;  1ZHW A;  2MNH A;  3AA7 A;  4AKM A;  4E1S A;  4E1T A;  2GE4 A;  1ORM A;  3AA6 A;  3O0E A;  4RJX A;  2M06 A;  2KXP A;  3POU A;  3V8U A;  3AA0 A;  3AA0 B;  1MM5 A;  4FZN A;  3T24 A;  3HW9 A;  4F4B A;  4FSP A;  4GCQ A;  5ADX L;  4D5U A;  5DL7 A;  4RLB A;  2ZFG A;  4FRX A;  3VZT X;  2XE5 A;  3T20 A;  3WI5 A;  1GFN A;  5D5D A;  4AZL A;  4AYM C;  2Y0K A;  1BH3 A;  3K19 A;  3SZD A;  4AKR A;  3POX A;  5JDP A;  3JTY A;  4FOZ A;  3AAE A;  4GHB A;  4FES A;  4O3W A;  1ZHX A;  2JMM A;  4G75 A;  4RLC A;  5AFU K;  5GV0 A;  2FGR A;  4JCH A;  3GP6 A;  4XNL A;  2M07 A;  1YS5 A;  2KZ7 A;  4FRT A;  3UAQ A;  1HXU A;  3AA7 B;  2J1N A;  3AA6 B;  1BXW A;  2W81 C;  3T0S A;  2KXP B;  1IZN A;  4Z3T A;  2XE2 A;  4BUM X;  3QRA A;  2Y0L A;  4AYD C;  3TZG A;  3VE1 A;  4AYN A;  2F1T A;  3PQS A;  4KR8 A;  2LFU A;  5PRN A;  4GCS A;  4XNK A;  1OSM A;  4N59 A;  8PRN A;  1GFO A;  1E54 A;  4AYI D;  4D65 A;  2LHF A;  4AKR B;  1Q9G A;  5DL6 A;  3SZV A;  3LK3 A;  2YPV A;  2XMX A;  3AAE B;  4QQ1 A;  2YNK A;  1Q9F A;  1OPF A;  4LSF A;  4LSI A;  1G90 A;  3QRC A;  4G76 A;  4PUX A;  1PHO A;  3C5O A;  2KZ7 B;  4KRA A;  4FMS A;  4FZM A;  3EMN X;  4FT6 A;  1BT9 A;  3POQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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