2YOXA

Bacillus amyloliquefaciens cbm33 in complex with cu(i) after photoreduction
Total Genus 58
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
178
structure length
178
Chain Sequence
HGYIKEPVSRAYMGALEKQTMGWTAAAQKYGSVIDNPQSVEGPKGFPAAGPPDGRIASANGGSGQIDFGLDKQTADHWVKQNIRGGFNTFTWHYTAPHATSKWHYYITKKNWNPNKPLSRDEFELIGTVNHDGSKADTNLTHKIFVPTDRSGYHIILGVWDVADTSNAFYNVIDVNLT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords RBAM17540
publication title The Copper Active Site of Cbm33 Polysaccharide Oxygenases.
pubmed doi rcsb
source organism Bacillus amyloliquefaciens
total genus 58
structure length 178
sequence length 178
chains with identical sequence B
ec nomenclature ec 1.-.-.-:
pdb deposition date 2012-10-29
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.50.50 Mainly Beta Distorted Sandwich Coagulation Factor XIII; Chain A, domain 1 chitin-binding protein cbp21 2yoxA00
4ALTA 2BEMA 2YOXA 4ALSA 4GBOA 4OY8A 5FTZA 3UAMA 4ALQA 4OY7A 4OY6A 5FJQA 4ALEA 4A02A 2BENA 4ALCA 2YOYA 5AA7A 2YOWA 2XWXA 5IJUA 4ALRA 2LHSA
chains in the Genus database with same CATH superfamily
5EMWA 2JHUA 5ACFA 2JHWA 2JHXA 1FT3A 4EISB 4JVFB 5FJQA 5E8FA 1FSOA 4A02A 5E80A 4EIRA 5DQEA 5ACHA 4D7UA 5F2UA 4GOKC 3JUAA 5ACJA 4MAIA 2JI0A 1DS6B 3L15A 4FMRA 4GBOA 5L7KA 4OY8A 5EMVA 3EIIA 4OY6A 5HNPA 1HH4D 4EISA 5ACGA 2BENA 5FOHA 4GOJC 2JHSA 5ACIA 3ZUDA 2YOWA 2XWXA 4ALRA 3EJAA 2LHSA 2BEMA 2YOXA 4MAHA 4ALQA 4ALEA 4F38B 1GDFA 2JHYA 3T5IA 2JHZA 2YETA 1FT0A 5HNOA 4D7VA 3T5GB 2YOYA 3KYSA 5IJUA 4JV6B 1KSHB 4B5QA 2VTCA 4ALTA 4ALSA 1FSTA 2JHTA 2R5OA 3GQQA 1AJWA 4LN0A 5FTZA 3UAMA 4OY7A 1RHOA 4JV8B 1KSJB 4RE1A 1DOAB 4JHPB 4JVBB 5DQ8A 2JHVA 1KMTA 5HGUA 4QI8A 4ALCA 5TARB 1KSGB 1QVYA 5AA7A 2BXWA 3RBQA 5TB5B
chains in the Genus database with same CATH topology
4ALTA 2BEMA 2YOXA 4ALSA 4GBOA 4OY8A 5FTZA 3UAMA 4ALQA 4OY7A 4OY6A 5FJQA 4ALEA 4A02A 2BENA 4ALCA 2YOYA 5AA7A 2YOWA 2XWXA 5IJUA 4ALRA 2LHSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ALT A;  2BEM A;  2YOX A;  4ALS A;  4GBO A;  4OY8 A;  5FTZ A;  3UAM A;  4ALQ A;  4OY7 A;  4OY6 A;  5FJQ A;  4ALE A;  4A02 A;  2BEN A;  4ALC A;  2YOY A;  5AA7 A;  2YOW A;  2XWX A;  5IJU A;  4ALR A;  2LHS A; 
#chains in the Genus database with same CATH topology
 5EMW A;  2JHU A;  5ACF A;  2JHW A;  2JHX A;  1FT3 A;  4EIS B;  4JVF B;  5FJQ A;  5E8F A;  1FSO A;  4A02 A;  5E80 A;  4EIR A;  5DQE A;  5ACH A;  4D7U A;  5F2U A;  4GOK C;  3JUA A;  5ACJ A;  4MAI A;  2JI0 A;  1DS6 B;  3L15 A;  4FMR A;  4GBO A;  5L7K A;  4OY8 A;  5EMV A;  3EII A;  4OY6 A;  5HNP A;  1HH4 D;  4EIS A;  5ACG A;  2BEN A;  5FOH A;  4GOJ C;  2JHS A;  5ACI A;  3ZUD A;  2YOW A;  2XWX A;  4ALR A;  3EJA A;  2LHS A;  2BEM A;  2YOX A;  4MAH A;  4ALQ A;  4ALE A;  4F38 B;  1GDF A;  2JHY A;  3T5I A;  2JHZ A;  2YET A;  1FT0 A;  5HNO A;  4D7V A;  3T5G B;  2YOY A;  3KYS A;  5IJU A;  4JV6 B;  1KSH B;  4B5Q A;  2VTC A;  4ALT A;  4ALS A;  1FST A;  2JHT A;  2R5O A;  3GQQ A;  1AJW A;  4LN0 A;  5FTZ A;  3UAM A;  4OY7 A;  1RHO A;  4JV8 B;  1KSJ B;  4RE1 A;  1DOA B;  4JHP B;  4JVB B;  5DQ8 A;  2JHV A;  1KMT A;  5HGU A;  4QI8 A;  4ALC A;  5TAR B;  1KSG B;  1QVY A;  5AA7 A;  2BXW A;  3RBQ A;  5TB5 B; 
#chains in the Genus database with same CATH homology
 4ALT A;  2BEM A;  2YOX A;  4ALS A;  4GBO A;  4OY8 A;  5FTZ A;  3UAM A;  4ALQ A;  4OY7 A;  4OY6 A;  5FJQ A;  4ALE A;  4A02 A;  2BEN A;  4ALC A;  2YOY A;  5AA7 A;  2YOW A;  2XWX A;  5IJU A;  4ALR A;  2LHS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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