2YPAC

Structure of the scl:e47:lmo2:ldb1 complex bound to dna
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
126
structure length
126
Chain Sequence
CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKIN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system
molecule keywords T-CELL ACUTE LYMPHOCYTIC LEUKEMIA PROTEIN 1
publication title Structural Basis for Lmo2-Driven Recruitment of the Scl:E47bHLH Heterodimer to Hematopoietic-Specific Transcriptional Targets.
pubmed doi rcsb
source organism Homo sapiens
total genus 20
structure length 126
sequence length 126
ec nomenclature
pdb deposition date 2012-10-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF00412 LIM LIM domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.110.10 Mainly Beta Ribbon Cysteine Rich Protein Cysteine Rich Protein 2ypaC02
2.10.110.10 Mainly Beta Ribbon Cysteine Rich Protein Cysteine Rich Protein 2ypaC01
2DFYC 1M3VA 2IYBE 2EGQA 2CUPA 2DARA 2CORA 2XJYA 3IXEB 2D8ZA 4KFZA 1WIGA 1NYPA 2O13A 1J2OA 2CU8A 2CUQA 2D8XA 1X64A 2L6ZC 2CURA 2XQNT 1QLIA 1IBIA 2MIUA 1IMLA 2EHEA 1X62A 1X4LA 2D8YA 1B8TA 1U5SB 1X68A 2KBXB 1X6AA 2DLOA 2JTNA 3MMKA 2O10A 1A7IA 2DJ7A 4HI8B 1X63A 3F6QB 4HI9B 1G47A 1X3HA 2XJZA 2CO8A 1X61A 2L6YB 2LZUA 1WYHA 4JCJA 2YPAC 1V6GA 1RUTX 2L4ZA 2LXDA 2MBVA 1CTLA 1CXXA
chains in the Genus database with same CATH superfamily
3ZLIA 5LKTA 2IYBE 2CORA 5LKXA 1NYPA 4EZHA 2CUQA 3NINA 1IBIA 2KBXB 3AVRA 1A7IA 5FXVA 3F6QB 2XUEA 4EYUA 5FXXA 3NISA 4ASKA 2MBVA 1CTLA 3NIKA 4BHWA 2CUPA 4KFZA 3NILA 1J2OA 1X64A 2XQNT 5FP3A 1B8TA 5FY0A 2DLOA 4HI9B 2O10A 4UF0A 3NIHA 1G47A 3ZPOA 2CO8A 4JCJA 1RUTX 4EZ4A 2XJYA 3IXEB 5FYMA 5LKUA 1IMLA 2EHEA 1U5SB 1X6AA 4HI8B 2JTNA 1X63A 1X61A 2L6YB 2LZUA 5FXZA 5FY7A 2YPAC 1V6GA 2LXDA 2L4ZA 4UF0B 2DFYC 1M3VA 2EGQA 2DARA 2D8ZA 1WIGA 2O13A 2CU8A 5LKZA 2D8XA 2L6ZC 2CURA 1QLIA 2MIUA 1X62A 1X4LA 2D8YA 1X68A 3NIMA 3MMKA 3AVSA 2DJ7A 1CXXA 5A1LA 1X3HA 2XJZA 1WYHA 5FXWA 3NIJA 5FY1A
chains in the Genus database with same CATH topology
3ZLIA 5LKTA 2IYBE 2CORA 5LKXA 1NYPA 4EZHA 2CUQA 3NINA 1IBIA 2KBXB 3AVRA 1A7IA 5FXVA 3F6QB 2XUEA 4EYUA 5FXXA 3NISA 4ASKA 2MBVA 1CTLA 3NIKA 4BHWA 2CUPA 4KFZA 3NILA 1J2OA 1X64A 2XQNT 5FP3A 1B8TA 5FY0A 2DLOA 4HI9B 2O10A 4UF0A 3NIHA 1G47A 3ZPOA 2CO8A 4JCJA 1RUTX 4EZ4A 2XJYA 3IXEB 5FYMA 5LKUA 1IMLA 2EHEA 1U5SB 1X6AA 4HI8B 2JTNA 1X63A 1X61A 2L6YB 2LZUA 5FXZA 5FY7A 2YPAC 1V6GA 2LXDA 2L4ZA 4UF0B 2DFYC 1M3VA 2EGQA 2DARA 2D8ZA 1WIGA 2O13A 2CU8A 5LKZA 2D8XA 2L6ZC 2CURA 1QLIA 2MIUA 1X62A 1X4LA 2D8YA 1X68A 3NIMA 3MMKA 3AVSA 2DJ7A 1CXXA 5A1LA 1X3HA 2XJZA 1WYHA 5FXWA 3NIJA 5FY1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DFY C;  1M3V A;  2IYB E;  2EGQ A;  2CUP A;  2DAR A;  2COR A;  2XJY A;  3IXE B;  2D8Z A;  4KFZ A;  1WIG A;  1NYP A;  2O13 A;  1J2O A;  2CU8 A;  2CUQ A;  2D8X A;  1X64 A;  2L6Z C;  2CUR A;  2XQN T;  1QLI A;  1IBI A;  2MIU A;  1IML A;  2EHE A;  1X62 A;  1X4L A;  2D8Y A;  1B8T A;  1U5S B;  1X68 A;  2KBX B;  1X6A A;  2DLO A;  2JTN A;  3MMK A;  2O10 A;  1A7I A;  2DJ7 A;  4HI8 B;  1X63 A;  3F6Q B;  4HI9 B;  1G47 A;  1X3H A;  2XJZ A;  2CO8 A;  1X61 A;  2L6Y B;  2LZU A;  1WYH A;  4JCJ A;  2YPA C;  1V6G A;  1RUT X;  2L4Z A;  2LXD A;  2MBV A;  1CTL A;  1CXX A; 
#chains in the Genus database with same CATH topology
 3ZLI A;  5LKT A;  2IYB E;  2COR A;  5LKX A;  1NYP A;  4EZH A;  2CUQ A;  3NIN A;  1IBI A;  2KBX B;  3AVR A;  1A7I A;  5FXV A;  3F6Q B;  2XUE A;  4EYU A;  5FXX A;  3NIS A;  4ASK A;  2MBV A;  1CTL A;  3NIK A;  4BHW A;  2CUP A;  4KFZ A;  3NIL A;  1J2O A;  1X64 A;  2XQN T;  5FP3 A;  1B8T A;  5FY0 A;  2DLO A;  4HI9 B;  2O10 A;  4UF0 A;  3NIH A;  1G47 A;  3ZPO A;  2CO8 A;  4JCJ A;  1RUT X;  4EZ4 A;  2XJY A;  3IXE B;  5FYM A;  5LKU A;  1IML A;  2EHE A;  1U5S B;  1X6A A;  4HI8 B;  2JTN A;  1X63 A;  1X61 A;  2L6Y B;  2LZU A;  5FXZ A;  5FY7 A;  2YPA C;  1V6G A;  2LXD A;  2L4Z A;  4UF0 B;  2DFY C;  1M3V A;  2EGQ A;  2DAR A;  2D8Z A;  1WIG A;  2O13 A;  2CU8 A;  5LKZ A;  2D8X A;  2L6Z C;  2CUR A;  1QLI A;  2MIU A;  1X62 A;  1X4L A;  2D8Y A;  1X68 A;  3NIM A;  3MMK A;  3AVS A;  2DJ7 A;  1CXX A;  5A1L A;  1X3H A;  2XJZ A;  1WYH A;  5FXW A;  3NIJ A;  5FY1 A; 
#chains in the Genus database with same CATH homology
 3ZLI A;  5LKT A;  2IYB E;  2COR A;  5LKX A;  1NYP A;  4EZH A;  2CUQ A;  3NIN A;  1IBI A;  2KBX B;  3AVR A;  1A7I A;  5FXV A;  3F6Q B;  2XUE A;  4EYU A;  5FXX A;  3NIS A;  4ASK A;  2MBV A;  1CTL A;  3NIK A;  4BHW A;  2CUP A;  4KFZ A;  3NIL A;  1J2O A;  1X64 A;  2XQN T;  5FP3 A;  1B8T A;  5FY0 A;  2DLO A;  4HI9 B;  2O10 A;  4UF0 A;  3NIH A;  1G47 A;  3ZPO A;  2CO8 A;  4JCJ A;  1RUT X;  4EZ4 A;  2XJY A;  3IXE B;  5FYM A;  5LKU A;  1IML A;  2EHE A;  1U5S B;  1X6A A;  4HI8 B;  2JTN A;  1X63 A;  1X61 A;  2L6Y B;  2LZU A;  5FXZ A;  5FY7 A;  2YPA C;  1V6G A;  2LXD A;  2L4Z A;  4UF0 B;  2DFY C;  1M3V A;  2EGQ A;  2DAR A;  2D8Z A;  1WIG A;  2O13 A;  2CU8 A;  5LKZ A;  2D8X A;  2L6Z C;  2CUR A;  1QLI A;  2MIU A;  1X62 A;  1X4L A;  2D8Y A;  1X68 A;  3NIM A;  3MMK A;  3AVS A;  2DJ7 A;  1CXX A;  5A1L A;  1X3H A;  2XJZ A;  1WYH A;  5FXW A;  3NIJ A;  5FY1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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