2YQIA

Solution structure of the second hmg-box domain from high mobility group protein b3
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
81
structure length
81
Chain Sequence
GSSGSSGNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADYKSKG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords High mobility group protein B3
publication title Solution structure of the second HMG-box domain from high mobility group protein B3
rcsb
source organism Homo sapiens
total genus 17
structure length 81
sequence length 81
ec nomenclature
pdb deposition date 2007-03-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00505 HMG_box HMG (high mobility group) box
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.30.10 Mainly Alpha Orthogonal Bundle DNA Binding (I), subunit A High mobility group box domain 2yqiA00
2CRJA 2EQZA 2LY4A 1HRYA 1AABA 2CS1A 2YRQA 1LWMA 1WZ6A 2CO9A 1J3CA 4QR9A 2D7LA 3TMMA 1CG7A 1HMEA 4EUWA 1L8ZA 3NM9A 1J3XA 1HSNA 1K99A 1J47A 2LHJA 1V63A 4S2QD 3F27D 1CKTA 1WXLA 1J46A 4NODA 3FGHA 1O4XB 1L8YA 1GT0D 1E7JA 1J5NA 3U2BC 2HDZA 4NNUA 2YUKA 1HMAA 1HRZA 1HMFA 2E6OA 2GZKA 4A3NA 1I11A 1NHMA 1NHNA 2LE4A 2CTOA 1V64A 2LEFA 4Y60C 1QRVA 3TQ6A 1J3DA 2YQIA 1HSMA 1WGFA 2YULA 2RTUA
chains in the Genus database with same CATH superfamily
2CRJA 2EQZA 2LEFA 2LY4A 1HRYA 1AABA 2CS1A 2YRQA 1LWMA 1WZ6A 2CO9A 1J3CA 3ANYB 4QR9A 2D7LA 3TMMA 1CG7A 1HMEA 4EUWA 1L8ZA 3NM9A 1J3XA 1HSNA 1K99A 1J47A 2LHJA 1V63A 4S2QD 3F27D 1CKTA 1WXLA 1J46A 4NODA 3FGHA 4KQEA 4A15A 1O4XB 1L8YA 1GT0D 1E7JA 1J5NA 3U2BC 2HDZA 4NNUA 2YUKA 1HMAA 1HRZA 1HMFA 2E6OA 3ABRB 2GZKA 4A3NA 1I11A 3ABOB 1NHMA 1NHNA 2LE4A 2CTOA 1V64A 2VSFA 3AO0B 4Y60C 3ABSB 3TQ6A 5H8WA 1QRVA 2YQIA 1HSMA 1WGFA 1J3DA 2YULA 2RTUA
chains in the Genus database with same CATH topology
2CRJA 2EQZA 2LY4A 1HRYA 1AABA 2CS1A 2YRQA 1LWMA 1WZ6A 2CO9A 1J3CA 4QR9A 2D7LA 3TMMA 1CG7A 1HMEA 4EUWA 1L8ZA 3NM9A 1J3XA 1HSNA 1K99A 1J47A 2LHJA 1V63A 4S2QD 3F27D 1CKTA 1WXLA 1J46A 4NODA 3FGHA 1O4XB 1L8YA 1GT0D 1E7JA 1J5NA 3U2BC 2HDZA 4NNUA 2YUKA 1HMAA 1HRZA 1HMFA 2E6OA 2GZKA 4A3NA 1I11A 1NHMA 1NHNA 2LE4A 2CTOA 1V64A 2LEFA 4Y60C 1QRVA 3TQ6A 1J3DA 2YQIA 1HSMA 1WGFA 2YULA 2RTUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CRJ A;  2EQZ A;  2LY4 A;  1HRY A;  1AAB A;  2CS1 A;  2YRQ A;  1LWM A;  1WZ6 A;  2CO9 A;  1J3C A;  4QR9 A;  2D7L A;  3TMM A;  1CG7 A;  1HME A;  4EUW A;  1L8Z A;  3NM9 A;  1J3X A;  1HSN A;  1K99 A;  1J47 A;  2LHJ A;  1V63 A;  4S2Q D;  3F27 D;  1CKT A;  1WXL A;  1J46 A;  4NOD A;  3FGH A;  1O4X B;  1L8Y A;  1GT0 D;  1E7J A;  1J5N A;  3U2B C;  2HDZ A;  4NNU A;  2YUK A;  1HMA A;  1HRZ A;  1HMF A;  2E6O A;  2GZK A;  4A3N A;  1I11 A;  1NHM A;  1NHN A;  2LE4 A;  2CTO A;  1V64 A;  2LEF A;  4Y60 C;  1QRV A;  3TQ6 A;  1J3D A;  2YQI A;  1HSM A;  1WGF A;  2YUL A;  2RTU A; 
#chains in the Genus database with same CATH topology
 2CRJ A;  2EQZ A;  2LEF A;  2LY4 A;  1HRY A;  1AAB A;  2CS1 A;  2YRQ A;  1LWM A;  1WZ6 A;  2CO9 A;  1J3C A;  3ANY B;  4QR9 A;  2D7L A;  3TMM A;  1CG7 A;  1HME A;  4EUW A;  1L8Z A;  3NM9 A;  1J3X A;  1HSN A;  1K99 A;  1J47 A;  2LHJ A;  1V63 A;  4S2Q D;  3F27 D;  1CKT A;  1WXL A;  1J46 A;  4NOD A;  3FGH A;  4KQE A;  4A15 A;  1O4X B;  1L8Y A;  1GT0 D;  1E7J A;  1J5N A;  3U2B C;  2HDZ A;  4NNU A;  2YUK A;  1HMA A;  1HRZ A;  1HMF A;  2E6O A;  3ABR B;  2GZK A;  4A3N A;  1I11 A;  3ABO B;  1NHM A;  1NHN A;  2LE4 A;  2CTO A;  1V64 A;  2VSF A;  3AO0 B;  4Y60 C;  3ABS B;  3TQ6 A;  5H8W A;  1QRV A;  2YQI A;  1HSM A;  1WGF A;  1J3D A;  2YUL A;  2RTU A; 
#chains in the Genus database with same CATH homology
 2CRJ A;  2EQZ A;  2LY4 A;  1HRY A;  1AAB A;  2CS1 A;  2YRQ A;  1LWM A;  1WZ6 A;  2CO9 A;  1J3C A;  4QR9 A;  2D7L A;  3TMM A;  1CG7 A;  1HME A;  4EUW A;  1L8Z A;  3NM9 A;  1J3X A;  1HSN A;  1K99 A;  1J47 A;  2LHJ A;  1V63 A;  4S2Q D;  3F27 D;  1CKT A;  1WXL A;  1J46 A;  4NOD A;  3FGH A;  1O4X B;  1L8Y A;  1GT0 D;  1E7J A;  1J5N A;  3U2B C;  2HDZ A;  4NNU A;  2YUK A;  1HMA A;  1HRZ A;  1HMF A;  2E6O A;  2GZK A;  4A3N A;  1I11 A;  1NHM A;  1NHN A;  2LE4 A;  2CTO A;  1V64 A;  2LEF A;  4Y60 C;  1QRV A;  3TQ6 A;  1J3D A;  2YQI A;  1HSM A;  1WGF A;  2YUL A;  2RTU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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