2YRNA

Solution structure of the ch domain from human neuron navigator 2
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
129
structure length
129
Chain Sequence
GSSGSSGKRKPVIHGLEDQKRIYTDWANHYLAKSGHKRLIRDLQQDVTDGVLLAQIIQVVANEKIEDINGCPKNRSQMIENIDACLNFLAAKGINIQGLSAEEIRNGNLKAILGLFFSLSRYKQQQQQP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Neuron navigator 2 isoform 4
publication title Solution structure of the CH domain from Human Neuron navigator 2
rcsb
source organism Homo sapiens
total genus 32
structure length 129
sequence length 129
ec nomenclature ec 3.6.4.12: DNA helicase.
pdb deposition date 2007-04-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00307 CH Calponin homology (CH) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 2yrnA01
4Q57B 2QJXA 1QAGA 2DK9A 5A38A 2D87A 3REPB 1DXXA 1UJOA 2D85A 3KMUB 3JARM 1WKUA 3I6XA 5BVRA 2WA7A 2E9KA 3KMWB 1H67A 1MB8A 3F7PA 2D89A 1UEGA 1RT8A 3HOPA 1VKAA 1PXYA 3JAKM 1WYMA 2R8UA 1WJOA 1P5SA 1WYRA 2QJZA 1SH6A 2RR8A 3HORA 2WFNA 2D86A 1WYPA 2JV9A 4TXKA 2K2RA 4EDNA 2WA5A 4EDMA 5A36A 1V5KA 3CO1A 2WA6A 4B7LA 1P2XA 1WYQA 2VZIB 1AOAA 5L0OA 3JALM 2EE7A 2L3GA 1SH5A 2YRNA 5J8EA 1BHDA 1WYOA 2D88A 5A4BA 1AA2A 1TJTA 4TXIA 1WIXA 2VZDA 2EYIA 3HOCA 2VZCA 4Q59A 2EYNA 1PA7A 2VZGB 1WYNA 4Q58A 3FERA 1WYLA 4EDLA 5A37A 2K3SA 2R0OA 3KY9A 1BKRA
chains in the Genus database with same CATH superfamily
4Q57B 2QJXA 1QAGA 2DK9A 5A38A 2D87A 3REPB 1DXXA 1UJOA 2D85A 3KMUB 3JARM 1WKUA 3I6XA 5FMTA 5BVRA 2WA7A 4DDPA 2HL9A 2E9KA 1EUVA 3KMWB 1H67A 1MB8A 3F7PA 2D89A 1UEGA 1RT8A 3HOPA 1VKAA 1PXYA 3JAKM 1WYMA 2R8UA 2VE7A 3VP7A 1WJOA 2HKPA 1P5SA 1WYRA 2EQOA 2QJZA 1SH6A 2RR8A 3HORA 2WFNA 2D86A 2VE7C 2IGPA 1WYPA 2JV9A 4TXKA 2K2RA 4EDNA 2WA5A 4EDMA 5A36A 1V5KA 4LVPA 3CO1A 2WA6A 4B7LA 5FMUA 1P2XA 1WYQA 2VZIB 1AOAA 5L0OA 3JALM 2WE6A 2EE7A 2L3GA 1SH5A 3EAYA 2YRNA 5J8EA 1BHDA 1WYOA 2D88A 5A4BA 1AA2A 1TJTA 4TXIA 1WIXA 2HL8A 2VZDA 2EYIA 3HOCA 2VZCA 4LVRA 4Q59A 2EYNA 1PA7A 2VZGB 1WYNA 4Q58A 3FERA 1WYLA 4EDLA 2WDTA 5A37A 2K3SA 2R0OA 3KY9A 1BKRA
chains in the Genus database with same CATH topology
4Q57B 2QJXA 1QAGA 2DK9A 5A38A 2D87A 3REPB 1DXXA 1UJOA 2D85A 3KMUB 3JARM 1WKUA 3I6XA 5BVRA 2WA7A 2E9KA 3KMWB 1H67A 1MB8A 3F7PA 2D89A 1UEGA 1RT8A 3HOPA 1VKAA 1PXYA 3JAKM 1WYMA 2R8UA 1WJOA 1P5SA 1WYRA 2QJZA 1SH6A 2RR8A 3HORA 2WFNA 2D86A 1WYPA 2JV9A 4TXKA 2K2RA 4EDNA 2WA5A 4EDMA 5A36A 1V5KA 3CO1A 2WA6A 4B7LA 1P2XA 1WYQA 2VZIB 1AOAA 5L0OA 3JALM 2EE7A 2L3GA 1SH5A 2YRNA 5J8EA 1BHDA 1WYOA 2D88A 5A4BA 1AA2A 1TJTA 4TXIA 1WIXA 2VZDA 2EYIA 3HOCA 2VZCA 4Q59A 2EYNA 1PA7A 2VZGB 1WYNA 4Q58A 3FERA 1WYLA 4EDLA 5A37A 2K3SA 2R0OA 3KY9A 1BKRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4Q57 B;  2QJX A;  1QAG A;  2DK9 A;  5A38 A;  2D87 A;  3REP B;  1DXX A;  1UJO A;  2D85 A;  3KMU B;  3JAR M;  1WKU A;  3I6X A;  5BVR A;  2WA7 A;  2E9K A;  3KMW B;  1H67 A;  1MB8 A;  3F7P A;  2D89 A;  1UEG A;  1RT8 A;  3HOP A;  1VKA A;  1PXY A;  3JAK M;  1WYM A;  2R8U A;  1WJO A;  1P5S A;  1WYR A;  2QJZ A;  1SH6 A;  2RR8 A;  3HOR A;  2WFN A;  2D86 A;  1WYP A;  2JV9 A;  4TXK A;  2K2R A;  4EDN A;  2WA5 A;  4EDM A;  5A36 A;  1V5K A;  3CO1 A;  2WA6 A;  4B7L A;  1P2X A;  1WYQ A;  2VZI B;  1AOA A;  5L0O A;  3JAL M;  2EE7 A;  2L3G A;  1SH5 A;  2YRN A;  5J8E A;  1BHD A;  1WYO A;  2D88 A;  5A4B A;  1AA2 A;  1TJT A;  4TXI A;  1WIX A;  2VZD A;  2EYI A;  3HOC A;  2VZC A;  4Q59 A;  2EYN A;  1PA7 A;  2VZG B;  1WYN A;  4Q58 A;  3FER A;  1WYL A;  4EDL A;  5A37 A;  2K3S A;  2R0O A;  3KY9 A;  1BKR A; 
#chains in the Genus database with same CATH topology
 4Q57 B;  2QJX A;  1QAG A;  2DK9 A;  5A38 A;  2D87 A;  3REP B;  1DXX A;  1UJO A;  2D85 A;  3KMU B;  3JAR M;  1WKU A;  3I6X A;  5FMT A;  5BVR A;  2WA7 A;  4DDP A;  2HL9 A;  2E9K A;  1EUV A;  3KMW B;  1H67 A;  1MB8 A;  3F7P A;  2D89 A;  1UEG A;  1RT8 A;  3HOP A;  1VKA A;  1PXY A;  3JAK M;  1WYM A;  2R8U A;  2VE7 A;  3VP7 A;  1WJO A;  2HKP A;  1P5S A;  1WYR A;  2EQO A;  2QJZ A;  1SH6 A;  2RR8 A;  3HOR A;  2WFN A;  2D86 A;  2VE7 C;  2IGP A;  1WYP A;  2JV9 A;  4TXK A;  2K2R A;  4EDN A;  2WA5 A;  4EDM A;  5A36 A;  1V5K A;  4LVP A;  3CO1 A;  2WA6 A;  4B7L A;  5FMU A;  1P2X A;  1WYQ A;  2VZI B;  1AOA A;  5L0O A;  3JAL M;  2WE6 A;  2EE7 A;  2L3G A;  1SH5 A;  3EAY A;  2YRN A;  5J8E A;  1BHD A;  1WYO A;  2D88 A;  5A4B A;  1AA2 A;  1TJT A;  4TXI A;  1WIX A;  2HL8 A;  2VZD A;  2EYI A;  3HOC A;  2VZC A;  4LVR A;  4Q59 A;  2EYN A;  1PA7 A;  2VZG B;  1WYN A;  4Q58 A;  3FER A;  1WYL A;  4EDL A;  2WDT A;  5A37 A;  2K3S A;  2R0O A;  3KY9 A;  1BKR A; 
#chains in the Genus database with same CATH homology
 4Q57 B;  2QJX A;  1QAG A;  2DK9 A;  5A38 A;  2D87 A;  3REP B;  1DXX A;  1UJO A;  2D85 A;  3KMU B;  3JAR M;  1WKU A;  3I6X A;  5BVR A;  2WA7 A;  2E9K A;  3KMW B;  1H67 A;  1MB8 A;  3F7P A;  2D89 A;  1UEG A;  1RT8 A;  3HOP A;  1VKA A;  1PXY A;  3JAK M;  1WYM A;  2R8U A;  1WJO A;  1P5S A;  1WYR A;  2QJZ A;  1SH6 A;  2RR8 A;  3HOR A;  2WFN A;  2D86 A;  1WYP A;  2JV9 A;  4TXK A;  2K2R A;  4EDN A;  2WA5 A;  4EDM A;  5A36 A;  1V5K A;  3CO1 A;  2WA6 A;  4B7L A;  1P2X A;  1WYQ A;  2VZI B;  1AOA A;  5L0O A;  3JAL M;  2EE7 A;  2L3G A;  1SH5 A;  2YRN A;  5J8E A;  1BHD A;  1WYO A;  2D88 A;  5A4B A;  1AA2 A;  1TJT A;  4TXI A;  1WIX A;  2VZD A;  2EYI A;  3HOC A;  2VZC A;  4Q59 A;  2EYN A;  1PA7 A;  2VZG B;  1WYN A;  4Q58 A;  3FER A;  1WYL A;  4EDL A;  5A37 A;  2K3S A;  2R0O A;  3KY9 A;  1BKR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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