2YSUA

Structure of the complex between btub and colicin e2 receptor binding domain
Total Genus 146
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
146
sequence length
591
structure length
576
Chain Sequence
SPDTLVVTANRFEQPRSTVLAPTTVVTRQDIDRWQSTSVNDVLRRLPGVDITQNGGSGQLSSIFIRGTNASHVLVLIDGVRLNLAGVSGSADLSQFPIALVQRVEYIRGPRSAVYGSDAIGGVVNIITTRDEPGTEISAGWGSNSYQNYDVSTQQQLGDKTRVTLLGDYAHTHGDNDGFLSKTLYGALEHNFTDAWSGFVRGYGYDNRTNYDAYYSPGSPLLDTRKLYSQSWDAGLRYNGELIKSQLITSYSHSKDYNYDPHYGRYDSSATLDEMKQYTVQWANNVIVGHGSIGAGVDWQKQTTTPGTGYVEDGYDQRNTGIYLTGLQQVGDFTFEGAARSDDNSQFGRHGTWQTSAGWEFIEGYRFIASYGTSYKAPNLGQLYGFYGNPNLDPEKSKQWEGAFEGLTAGVNWRISGYRNDVSDLIDYDDHTLKYYNEGKARIKGVEATANFDTGPLTHTVSYDYVDARNAITDTPLLRRAKQQVKYQLDWQLYDFDWGITYQYLGTRYDKDYSSYPYQTVKMGGVSLWDLAVAYPVTSHLTVRGKIANLFDKDYETVYGYQTAGREYTLSGSYTF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transport protein/hydrolase
molecule keywords Vitamin B12 transporter btuB
publication title Structure of the complex of the colicin E2 R-domain and its BtuB receptor. The outer membrane colicin translocon
pubmed doi rcsb
source organism Escherichia coli
total genus 146
structure length 576
sequence length 591
ec nomenclature
pdb deposition date 2007-04-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00593 TonB_dep_Rec TonB dependent receptor
A PF07715 Plug TonB-dependent Receptor Plug Domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.170.20 Mainly Beta Beta Barrel Maltoporin; Chain A TonB-dependent receptor, beta-barrel domain 2ysuA02
2.170.130.10 Mainly Beta Beta Complex Ferric Hydroxamate Uptake Protein; Chain A, domain 1 TonB-dependent receptor, plug domain 2ysuA01
1KMOA 1BY5A 4AIPA 2YSUA 4RDTA 2FCPA 3V8XA 3V89A 4RDRA 1NQEA 2W6TA 1NQFA 2GRXA 1PNZA 3RGNA 4AIQA 1UJWA 1XKWA 2IAHA 4EPAA 1NQGA 1KMPA 1QJQA 2HDFA 2W75A 1PO3A 2W16A 4CU4A 1FCPA 1QFFA 2GUFA 2HDIA 3CSLA 1PO0A 4B7OA 1XKHA 3RGMA 1QKCA 3M8DA 2O5PA 3FHHA 3M8BA 1BY3A 2W76A 3CSNA 2W77A 2W78A 3EFMA 1NQHA 1QFGA 2GSKA 1FI1A 3QLBA 1FEPA 5FOKA 3DDRA 2W6UA
chains in the Genus database with same CATH superfamily
1KMOA 1BY5A 4AIPA 2YSUA 4RDTA 2FCPA 3V8XA 3V89A 4RDRA 1MALA 1NQEA 2W6UA 2W6TA 1NQFA 1OH2P 1A0TP 2GRXA 1MPMA 1PNZA 1OH2Q 3RGNA 4AIQA 1UJWA 1XKWA 2IAHA 4EPAA 1NQGA 1KMPA 1QJQA 2HDFA 2W75A 1PO3A 2W16A 4CU4A 1FCPA 2MPRA 1QFFA 1MPNA 2GUFA 2HDIA 3CSLA 1PO0A 4B7OA 1MPQA 1XKHA 1A0SP 3RGMA 1QKCA 3M8DA 1JBIA 1MPOA 2O5PA 3M8BA 1BY3A 3FHHA 3CSNA 2W76A 2W77A 3EFMA 2W78A 1NQHA 1QFGA 2GSKA 1FI1A 3QLBA 1FEPA 5FOKA 3DDRA 1AF6A 1MPRA
chains in the Genus database with same CATH topology
1KMOA 1BY5A 4AIPA 2YSUA 4RDTA 2FCPA 3V8XA 3V89A 4RDRA 1NQEA 2W6TA 1NQFA 2GRXA 1PNZA 3RGNA 4AIQA 1UJWA 1XKWA 2IAHA 4EPAA 1NQGA 1KMPA 1QJQA 2HDFA 2W75A 1PO3A 2W16A 4CU4A 1FCPA 1QFFA 2GUFA 2HDIA 3CSLA 1PO0A 4B7OA 1XKHA 3RGMA 1QKCA 3M8DA 2O5PA 3FHHA 3M8BA 1BY3A 2W76A 3CSNA 2W77A 2W78A 3EFMA 1NQHA 1QFGA 2GSKA 1FI1A 3QLBA 1FEPA 5FOKA 3DDRA 2W6UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KMO A;  1BY5 A;  4AIP A;  2YSU A;  4RDT A;  2FCP A;  3V8X A;  3V89 A;  4RDR A;  1NQE A;  2W6T A;  1NQF A;  2GRX A;  1PNZ A;  3RGN A;  4AIQ A;  1UJW A;  1XKW A;  2IAH A;  4EPA A;  1NQG A;  1KMP A;  1QJQ A;  2HDF A;  2W75 A;  1PO3 A;  2W16 A;  4CU4 A;  1FCP A;  1QFF A;  2GUF A;  2HDI A;  3CSL A;  1PO0 A;  4B7O A;  1XKH A;  3RGM A;  1QKC A;  3M8D A;  2O5P A;  3FHH A;  3M8B A;  1BY3 A;  2W76 A;  3CSN A;  2W77 A;  2W78 A;  3EFM A;  1NQH A;  1QFG A;  2GSK A;  1FI1 A;  3QLB A;  1FEP A;  5FOK A;  3DDR A;  2W6U A; 
#chains in the Genus database with same CATH topology
 1KMO A;  1BY5 A;  4AIP A;  2YSU A;  4RDT A;  2FCP A;  3V8X A;  3V89 A;  4RDR A;  1MAL A;  1NQE A;  2W6U A;  2W6T A;  1NQF A;  1OH2 P;  1A0T P;  2GRX A;  1MPM A;  1PNZ A;  1OH2 Q;  3RGN A;  4AIQ A;  1UJW A;  1XKW A;  2IAH A;  4EPA A;  1NQG A;  1KMP A;  1QJQ A;  2HDF A;  2W75 A;  1PO3 A;  2W16 A;  4CU4 A;  1FCP A;  2MPR A;  1QFF A;  1MPN A;  2GUF A;  2HDI A;  3CSL A;  1PO0 A;  4B7O A;  1MPQ A;  1XKH A;  1A0S P;  3RGM A;  1QKC A;  3M8D A;  1JBI A;  1MPO A;  2O5P A;  3M8B A;  1BY3 A;  3FHH A;  3CSN A;  2W76 A;  2W77 A;  3EFM A;  2W78 A;  1NQH A;  1QFG A;  2GSK A;  1FI1 A;  3QLB A;  1FEP A;  5FOK A;  3DDR A;  1AF6 A;  1MPR A; 
#chains in the Genus database with same CATH homology
 1KMO A;  1BY5 A;  4AIP A;  2YSU A;  4RDT A;  2FCP A;  3V8X A;  3V89 A;  4RDR A;  1NQE A;  2W6T A;  1NQF A;  2GRX A;  1PNZ A;  3RGN A;  4AIQ A;  1UJW A;  1XKW A;  2IAH A;  4EPA A;  1NQG A;  1KMP A;  1QJQ A;  2HDF A;  2W75 A;  1PO3 A;  2W16 A;  4CU4 A;  1FCP A;  1QFF A;  2GUF A;  2HDI A;  3CSL A;  1PO0 A;  4B7O A;  1XKH A;  3RGM A;  1QKC A;  3M8D A;  2O5P A;  3FHH A;  3M8B A;  1BY3 A;  2W76 A;  3CSN A;  2W77 A;  2W78 A;  3EFM A;  1NQH A;  1QFG A;  2GSK A;  1FI1 A;  3QLB A;  1FEP A;  5FOK A;  3DDR A;  2W6U A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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