2YV6A

Crystal structure of human bcl-2 family protein bak
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
162
structure length
159
Chain Sequence
SEEQVAQDTEEVFRSYVFYRHQQEQEVAAPADPEMVTLPLQPSSTMGQVGRQLAIIGDDINRRYDSEFQTMLQHLQPTAENAYEYFTKIATSLFESGINWGRVVALLGFGYRLALHVYQHGLTGFLGQVTRFVVDFMLHHCIARWIAQRGGWVAALNLG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Apoptosis
molecule keywords Bcl-2 homologous antagonist/killer
publication title Novel dimerization mode of the human Bcl-2 family protein Bak, a mitochondrial apoptosis regulator.
pubmed doi rcsb
source organism Homo sapiens
total genus 54
structure length 159
sequence length 162
ec nomenclature
pdb deposition date 2007-04-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00452 Bcl-2 Apoptosis regulator proteins, Bcl-2 family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.437.10 Mainly Alpha Orthogonal Bundle Apoptosis Regulator Bcl-x Blc2-like 2yv6A00
5FDOA 3MQPA 3QBRA 1F16A 1Q59A 2O22A 1R2EA 4QVXA 2VOFA 2KBWA 3KJ0A 4S0OA 2W3LA 1G5JA 2LR1A 5IEZA 1PQ1A 1R2HA 2B48A 1PQ0A 3IHEA 4BDUA 1YSWA 2A5YA 2NLAA 2O21A 4U2UA 2O2FA 2YV6A 2K7WA 3IHDA 5FC4A 2WH6A 2VOGA 4BPJA 4HW3A 2XA0A 4K5BC 2RODA 4HW4A 1WSXA 2NL9A 5C3FA 4ZBIA 5FMIA 3I1HA 1AF3A 1TY4A 2IMTA 4YJ4A 1G5MA 5IF4A 2ABOA 2KUAA 1YSNA 4ZIEA 3WIYA 4HW2A 3IIGA 4WMRA 3KJ2A 2ME8A 5C6HA 2VOIA 3IO9A 1OHUA 2JCNA 2V6QA 1YSIA 4S0PA 1MK3A 4OYDA 3KZ0A 4G35A 1GJHA 4QNQA 3IHCA 1O0LA 2VOHA 1LXLA 1R2GA 2MEJA 5KTGA 2JM6B 4BD6A 4ZEQA 3MK8A 4U2VA 4OQ6A 1YSGA 2ROCA 3KJ1A 4BD2A 1MAZA 2M5BA 2VM6A 2BIDA 2MHSA 2O2MA 2BZWA 4ZIHA 4ZIFA 4OQ5A 3DVUA 2XPXA 4YK9A 1K3KA 4BD7A 1DDBA 4ZBFA 3D7VA 3CVAX 4ZIIA 3BL2A 3PK1A 5FDRA 1ZY3A 4BPIA 3IIHA 4ZIGA 1BXLA 1R2DA 2O2NA 3WIXA 3ILCA 5JSBA 4BD8A 1R2IA 2IMSA 2PQKA 4B4SA 5KU9A 4MI8A
chains in the Genus database with same CATH superfamily
5FDOA 3MQPA 3QBRA 4UF3A 1F16A 1Q59A 2O22A 1R2EA 4QVXA 2VOFA 2KBWA 3KJ0A 4S0OA 2W3LA 1G5JA 2LR1A 5IEZA 1PQ1A 1R2HA 2B48A 1PQ0A 3IHEA 4BDUA 1YSWA 2A5YA 2NLAA 2O21A 4U2UA 2O2FA 2YV6A 2K7WA 3IHDA 5FC4A 2WH6A 2VOGA 4BPJA 2VTYA 4HW3A 2XA0A 4K5BC 2RODA 4HW4A 1WSXA 2NL9A 5C3FA 4ZBIA 5FMIA 3I1HA 1AF3A 1TY4A 4LQKA 2IMTA 4YJ4A 1G5MA 5IF4A 2ABOA 2KUAA 1YSNA 4ZIEA 4UF1A 3WIYA 2VVXA 4HW2A 3IIGA 4WMRA 3KJ2A 2I39A 2ME8A 5C6HA 2VOIA 3IO9A 1OHUA 2JCNA 2V6QA 1YSIA 4S0PA 1MK3A 4OYDA 3JRVA 3KZ0A 4G35A 1GJHA 4D2LA 4QNQA 3IHCA 1O0LA 2VOHA 1LXLA 1R2GA 2MEJA 5KTGA 2JM6B 2VVYA 4BD6A 4ZEQA 3MK8A 2UXEA 4U2VA 4OQ6A 1YSGA 2ROCA 3KJ1A 4BD2A 1MAZA 2M5BA 2VM6A 2BIDA 2MHSA 2O2MA 2BZWA 4ZIHA 4ZIFA 2K36A 4OQ5A 2VVWA 2JBYA 2XPXA 3DVUA 4YK9A 1K3KA 4BD7A 4M0SA 1DDBA 4UF2A 4ZBFA 3D7VA 3CVAX 4ZIIA 3BL2A 3PK1A 5FDRA 4BBDA 1ZY3A 4BPIA 3IIHA 2O42A 4BBCA 4ZIGA 1BXLA 1R2DA 2O2NA 3WIXA 4BBBA 3ILCA 5JSBA 4BD8A 1R2IA 2IMSA 2PQKA 4D2MA 4B4SA 5KU9A 4MI8A 2JBXA
chains in the Genus database with same CATH topology
5FDOA 3MQPA 3QBRA 1F16A 1Q59A 2O22A 1R2EA 4QVXA 2VOFA 2KBWA 3KJ0A 4S0OA 2W3LA 1G5JA 2LR1A 5IEZA 1PQ1A 1R2HA 2B48A 1PQ0A 3IHEA 4BDUA 1YSWA 2A5YA 2NLAA 2O21A 4U2UA 2O2FA 2YV6A 2K7WA 3IHDA 5FC4A 2WH6A 2VOGA 4BPJA 4HW3A 2XA0A 4K5BC 2RODA 4HW4A 1WSXA 2NL9A 5C3FA 4ZBIA 5FMIA 3I1HA 1AF3A 1TY4A 2IMTA 4YJ4A 1G5MA 5IF4A 2ABOA 2KUAA 1YSNA 4ZIEA 3WIYA 4HW2A 3IIGA 4WMRA 3KJ2A 2ME8A 5C6HA 2VOIA 3IO9A 1OHUA 2JCNA 2V6QA 1YSIA 4S0PA 1MK3A 4OYDA 3KZ0A 4G35A 1GJHA 4QNQA 3IHCA 1O0LA 2VOHA 1LXLA 1R2GA 2MEJA 5KTGA 2JM6B 4BD6A 4ZEQA 3MK8A 4U2VA 4OQ6A 1YSGA 2ROCA 3KJ1A 4BD2A 1MAZA 2M5BA 2VM6A 2BIDA 2MHSA 2O2MA 2BZWA 4ZIHA 4ZIFA 4OQ5A 3DVUA 2XPXA 4YK9A 1K3KA 4BD7A 1DDBA 4ZBFA 3D7VA 3CVAX 4ZIIA 3BL2A 3PK1A 5FDRA 1ZY3A 4BPIA 3IIHA 4ZIGA 1BXLA 1R2DA 2O2NA 3WIXA 3ILCA 5JSBA 4BD8A 1R2IA 2IMSA 2PQKA 4B4SA 5KU9A 4MI8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5FDO A;  3MQP A;  3QBR A;  1F16 A;  1Q59 A;  2O22 A;  1R2E A;  4QVX A;  2VOF A;  2KBW A;  3KJ0 A;  4S0O A;  2W3L A;  1G5J A;  2LR1 A;  5IEZ A;  1PQ1 A;  1R2H A;  2B48 A;  1PQ0 A;  3IHE A;  4BDU A;  1YSW A;  2A5Y A;  2NLA A;  2O21 A;  4U2U A;  2O2F A;  2YV6 A;  2K7W A;  3IHD A;  5FC4 A;  2WH6 A;  2VOG A;  4BPJ A;  4HW3 A;  2XA0 A;  4K5B C;  2ROD A;  4HW4 A;  1WSX A;  2NL9 A;  5C3F A;  4ZBI A;  5FMI A;  3I1H A;  1AF3 A;  1TY4 A;  2IMT A;  4YJ4 A;  1G5M A;  5IF4 A;  2ABO A;  2KUA A;  1YSN A;  4ZIE A;  3WIY A;  4HW2 A;  3IIG A;  4WMR A;  3KJ2 A;  2ME8 A;  5C6H A;  2VOI A;  3IO9 A;  1OHU A;  2JCN A;  2V6Q A;  1YSI A;  4S0P A;  1MK3 A;  4OYD A;  3KZ0 A;  4G35 A;  1GJH A;  4QNQ A;  3IHC A;  1O0L A;  2VOH A;  1LXL A;  1R2G A;  2MEJ A;  5KTG A;  2JM6 B;  4BD6 A;  4ZEQ A;  3MK8 A;  4U2V A;  4OQ6 A;  1YSG A;  2ROC A;  3KJ1 A;  4BD2 A;  1MAZ A;  2M5B A;  2VM6 A;  2BID A;  2MHS A;  2O2M A;  2BZW A;  4ZIH A;  4ZIF A;  4OQ5 A;  3DVU A;  2XPX A;  4YK9 A;  1K3K A;  4BD7 A;  1DDB A;  4ZBF A;  3D7V A;  3CVA X;  4ZII A;  3BL2 A;  3PK1 A;  5FDR A;  1ZY3 A;  4BPI A;  3IIH A;  4ZIG A;  1BXL A;  1R2D A;  2O2N A;  3WIX A;  3ILC A;  5JSB A;  4BD8 A;  1R2I A;  2IMS A;  2PQK A;  4B4S A;  5KU9 A;  4MI8 A; 
#chains in the Genus database with same CATH topology
 5FDO A;  3MQP A;  3QBR A;  4UF3 A;  1F16 A;  1Q59 A;  2O22 A;  1R2E A;  4QVX A;  2VOF A;  2KBW A;  3KJ0 A;  4S0O A;  2W3L A;  1G5J A;  2LR1 A;  5IEZ A;  1PQ1 A;  1R2H A;  2B48 A;  1PQ0 A;  3IHE A;  4BDU A;  1YSW A;  2A5Y A;  2NLA A;  2O21 A;  4U2U A;  2O2F A;  2YV6 A;  2K7W A;  3IHD A;  5FC4 A;  2WH6 A;  2VOG A;  4BPJ A;  2VTY A;  4HW3 A;  2XA0 A;  4K5B C;  2ROD A;  4HW4 A;  1WSX A;  2NL9 A;  5C3F A;  4ZBI A;  5FMI A;  3I1H A;  1AF3 A;  1TY4 A;  4LQK A;  2IMT A;  4YJ4 A;  1G5M A;  5IF4 A;  2ABO A;  2KUA A;  1YSN A;  4ZIE A;  4UF1 A;  3WIY A;  2VVX A;  4HW2 A;  3IIG A;  4WMR A;  3KJ2 A;  2I39 A;  2ME8 A;  5C6H A;  2VOI A;  3IO9 A;  1OHU A;  2JCN A;  2V6Q A;  1YSI A;  4S0P A;  1MK3 A;  4OYD A;  3JRV A;  3KZ0 A;  4G35 A;  1GJH A;  4D2L A;  4QNQ A;  3IHC A;  1O0L A;  2VOH A;  1LXL A;  1R2G A;  2MEJ A;  5KTG A;  2JM6 B;  2VVY A;  4BD6 A;  4ZEQ A;  3MK8 A;  2UXE A;  4U2V A;  4OQ6 A;  1YSG A;  2ROC A;  3KJ1 A;  4BD2 A;  1MAZ A;  2M5B A;  2VM6 A;  2BID A;  2MHS A;  2O2M A;  2BZW A;  4ZIH A;  4ZIF A;  2K36 A;  4OQ5 A;  2VVW A;  2JBY A;  2XPX A;  3DVU A;  4YK9 A;  1K3K A;  4BD7 A;  4M0S A;  1DDB A;  4UF2 A;  4ZBF A;  3D7V A;  3CVA X;  4ZII A;  3BL2 A;  3PK1 A;  5FDR A;  4BBD A;  1ZY3 A;  4BPI A;  3IIH A;  2O42 A;  4BBC A;  4ZIG A;  1BXL A;  1R2D A;  2O2N A;  3WIX A;  4BBB A;  3ILC A;  5JSB A;  4BD8 A;  1R2I A;  2IMS A;  2PQK A;  4D2M A;  4B4S A;  5KU9 A;  4MI8 A;  2JBX A; 
#chains in the Genus database with same CATH homology
 5FDO A;  3MQP A;  3QBR A;  1F16 A;  1Q59 A;  2O22 A;  1R2E A;  4QVX A;  2VOF A;  2KBW A;  3KJ0 A;  4S0O A;  2W3L A;  1G5J A;  2LR1 A;  5IEZ A;  1PQ1 A;  1R2H A;  2B48 A;  1PQ0 A;  3IHE A;  4BDU A;  1YSW A;  2A5Y A;  2NLA A;  2O21 A;  4U2U A;  2O2F A;  2YV6 A;  2K7W A;  3IHD A;  5FC4 A;  2WH6 A;  2VOG A;  4BPJ A;  4HW3 A;  2XA0 A;  4K5B C;  2ROD A;  4HW4 A;  1WSX A;  2NL9 A;  5C3F A;  4ZBI A;  5FMI A;  3I1H A;  1AF3 A;  1TY4 A;  2IMT A;  4YJ4 A;  1G5M A;  5IF4 A;  2ABO A;  2KUA A;  1YSN A;  4ZIE A;  3WIY A;  4HW2 A;  3IIG A;  4WMR A;  3KJ2 A;  2ME8 A;  5C6H A;  2VOI A;  3IO9 A;  1OHU A;  2JCN A;  2V6Q A;  1YSI A;  4S0P A;  1MK3 A;  4OYD A;  3KZ0 A;  4G35 A;  1GJH A;  4QNQ A;  3IHC A;  1O0L A;  2VOH A;  1LXL A;  1R2G A;  2MEJ A;  5KTG A;  2JM6 B;  4BD6 A;  4ZEQ A;  3MK8 A;  4U2V A;  4OQ6 A;  1YSG A;  2ROC A;  3KJ1 A;  4BD2 A;  1MAZ A;  2M5B A;  2VM6 A;  2BID A;  2MHS A;  2O2M A;  2BZW A;  4ZIH A;  4ZIF A;  4OQ5 A;  3DVU A;  2XPX A;  4YK9 A;  1K3K A;  4BD7 A;  1DDB A;  4ZBF A;  3D7V A;  3CVA X;  4ZII A;  3BL2 A;  3PK1 A;  5FDR A;  1ZY3 A;  4BPI A;  3IIH A;  4ZIG A;  1BXL A;  1R2D A;  2O2N A;  3WIX A;  3ILC A;  5JSB A;  4BD8 A;  1R2I A;  2IMS A;  2PQK A;  4B4S A;  5KU9 A;  4MI8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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