2YVIA

Crystal structure of a death domain of human ankryn protein
Total Genus 36
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
89
structure length
89
Chain Sequence
SLSGTEQAEMKMAVISEHLGLSWAELARELQFSVEDINRIRVENPNSLLEQSVALLNLWVIREGQNANMENLYTALQSIDRGEIVNMLE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure of a death domain of human ankryn protein
rcsb
source organism Homo sapiens
molecule tags Cell adhesion
molecule keywords Ankyrin-1
total genus 36
structure length 89
sequence length 89
ec nomenclature
pdb deposition date 2007-04-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00531 Death Death domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 2yviA00
1CWWA 4O7QA 3CL3A 1PN5A 4DWNA 3MOPK 4IZ7B 4IZ5E 3LQQA 3MOPG 4O9FA 2F1SA 2L6AA 4D8OA 2N83A 1WH4A 3QF2A 1YGOA 2N80A 2NAQA 2OF5A 4IZAB 3CRDA 2YU0A 2A9IA 4A2WA 2MN4A 2B1WA 1WXPA 4JUPA 2OF5H 4O9LA 2DBGA 4P4HA 2N97A 2KN6A 2NSNA 2MB9A 1NGRA 1D2ZA 4EWIA 4RHWE 4E9MA 3EZQB 2L9MA 1CY5A 2IB1A 4F44A 1DGNA 1E3YA 2HM2Q 4N1LA 2GF5A 2BBZA 4F42A 1C15A 2G7RA 4RHWA 4FH0A 4N1KA 1Z6TA 2DBDA 3EZQA 2LWDA 2LWEA 3YGSP 2YQFA 4I16A 4N1JA 2N1FA 3J63A 2M5VA 1UCPA 4QOBA 2D96A 2YVIA 2DBFA 3T6PA 3YGSC 4UZ0A 2DO9A 1DDFA 2P1HA 2NZ7A 4M9XA 2N00A 2O71A 1N3KA 2VGQA 4M9ZA 1E41A 2MS7A 2MS8A 4P4HI 1A1WA 1WMGA 3MOPA 2BBRA 2LS7A 2A5YB 2YGSA 4NQKA 1A1ZA 2MPCA 3KATA 2KM6A 4LWDA 1D2ZB 2N7ZA 4JQWA 1ICHA 4ZBWA 4A2QA 1FADA 4M9SA 2DBHA 3LQRA 4O6XA 3J6JA
chains in the Genus database with same CATH superfamily
1CWWA 4O7QA 3CL3A 1PN5A 4DWNA 3MOPK 4IZ7B 4IZ5E 3LQQA 3MOPG 4O9FA 2F1SA 2L6AA 4D8OA 2N83A 1WH4A 3QF2A 1YGOA 2N80A 2NAQA 2OF5A 4IZAB 3CRDA 2YU0A 2A9IA 4A2WA 2MN4A 2B1WA 1WXPA 4JUPA 2OF5H 4O9LA 2DBGA 4P4HA 2N97A 2KN6A 2NSNA 2MB9A 1NGRA 1D2ZA 4EWIA 4RHWE 4E9MA 3EZQB 2L9MA 1CY5A 2IB1A 4F44A 1DGNA 1E3YA 2HM2Q 4N1LA 2GF5A 2BBZA 4F42A 1C15A 2G7RA 4RHWA 4FH0A 4N1KA 1Z6TA 2DBDA 3EZQA 2LWDA 2LWEA 3YGSP 2YQFA 4I16A 4N1JA 2N1FA 3J63A 2M5VA 1UCPA 4QOBA 2D96A 2YVIA 2DBFA 3T6PA 3YGSC 4UZ0A 2DO9A 1DDFA 2P1HA 2NZ7A 4M9XA 2N00A 2O71A 1N3KA 2VGQA 2XV9A 4M9ZA 1E41A 2MS7A 2MJMA 2MS8A 4P4HI 1A1WA 1WMGA 3MOPA 2BBRA 2LS7A 2A5YB 2YGSA 4NQKA 1A1ZA 2MPCA 3KATA 2KM6A 4LWDA 1D2ZB 2N7ZA 4JQWA 1ICHA 4ZBWA 4A2QA 1FADA 4M9SA 2DBHA 3LQRA 4O6XA 3J6JA
chains in the Genus database with same CATH topology
1CWWA 4O7QA 3CL3A 1PN5A 4DWNA 3MOPK 4IZ7B 4IZ5E 3LQQA 3MOPG 4O9FA 2F1SA 2L6AA 4D8OA 2N83A 1WH4A 3QF2A 1YGOA 2N80A 2NAQA 2OF5A 4IZAB 3CRDA 2YU0A 2A9IA 4A2WA 2MN4A 2B1WA 1WXPA 4JUPA 2OF5H 4O9LA 2DBGA 4P4HA 2N97A 2KN6A 2NSNA 2MB9A 1NGRA 1D2ZA 4EWIA 4RHWE 4E9MA 3EZQB 2L9MA 1CY5A 2IB1A 4F44A 1DGNA 1E3YA 2HM2Q 4N1LA 2GF5A 2BBZA 4F42A 1C15A 2G7RA 4RHWA 4FH0A 4N1KA 1Z6TA 2DBDA 3EZQA 2LWDA 2LWEA 3YGSP 2YQFA 4I16A 4N1JA 2N1FA 3J63A 2M5VA 1UCPA 4QOBA 2D96A 2YVIA 2DBFA 3T6PA 3YGSC 4UZ0A 2DO9A 1DDFA 2P1HA 2NZ7A 4M9XA 2N00A 2O71A 1N3KA 2VGQA 2XV9A 4M9ZA 1E41A 2MS7A 2MJMA 2MS8A 4P4HI 1A1WA 1WMGA 3MOPA 2BBRA 2LS7A 2A5YB 2YGSA 4NQKA 1A1ZA 2MPCA 3KATA 2KM6A 4LWDA 1D2ZB 2N7ZA 4JQWA 1ICHA 4ZBWA 4A2QA 1FADA 4M9SA 2DBHA 3LQRA 4O6XA 3J6JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1CWW A;  4O7Q A;  3CL3 A;  1PN5 A;  4DWN A;  3MOP K;  4IZ7 B;  4IZ5 E;  3LQQ A;  3MOP G;  4O9F A;  2F1S A;  2L6A A;  4D8O A;  2N83 A;  1WH4 A;  3QF2 A;  1YGO A;  2N80 A;  2NAQ A;  2OF5 A;  4IZA B;  3CRD A;  2YU0 A;  2A9I A;  4A2W A;  2MN4 A;  2B1W A;  1WXP A;  4JUP A;  2OF5 H;  4O9L A;  2DBG A;  4P4H A;  2N97 A;  2KN6 A;  2NSN A;  2MB9 A;  1NGR A;  1D2Z A;  4EWI A;  4RHW E;  4E9M A;  3EZQ B;  2L9M A;  1CY5 A;  2IB1 A;  4F44 A;  1DGN A;  1E3Y A;  2HM2 Q;  4N1L A;  2GF5 A;  2BBZ A;  4F42 A;  1C15 A;  2G7R A;  4RHW A;  4FH0 A;  4N1K A;  1Z6T A;  2DBD A;  3EZQ A;  2LWD A;  2LWE A;  3YGS P;  2YQF A;  4I16 A;  4N1J A;  2N1F A;  3J63 A;  2M5V A;  1UCP A;  4QOB A;  2D96 A;  2YVI A;  2DBF A;  3T6P A;  3YGS C;  4UZ0 A;  2DO9 A;  1DDF A;  2P1H A;  2NZ7 A;  4M9X A;  2N00 A;  2O71 A;  1N3K A;  2VGQ A;  4M9Z A;  1E41 A;  2MS7 A;  2MS8 A;  4P4H I;  1A1W A;  1WMG A;  3MOP A;  2BBR A;  2LS7 A;  2A5Y B;  2YGS A;  4NQK A;  1A1Z A;  2MPC A;  3KAT A;  2KM6 A;  4LWD A;  1D2Z B;  2N7Z A;  4JQW A;  1ICH A;  4ZBW A;  4A2Q A;  1FAD A;  4M9S A;  2DBH A;  3LQR A;  4O6X A;  3J6J A; 
#chains in the Genus database with same CATH topology
 1CWW A;  4O7Q A;  3CL3 A;  1PN5 A;  4DWN A;  3MOP K;  4IZ7 B;  4IZ5 E;  3LQQ A;  3MOP G;  4O9F A;  2F1S A;  2L6A A;  4D8O A;  2N83 A;  1WH4 A;  3QF2 A;  1YGO A;  2N80 A;  2NAQ A;  2OF5 A;  4IZA B;  3CRD A;  2YU0 A;  2A9I A;  4A2W A;  2MN4 A;  2B1W A;  1WXP A;  4JUP A;  2OF5 H;  4O9L A;  2DBG A;  4P4H A;  2N97 A;  2KN6 A;  2NSN A;  2MB9 A;  1NGR A;  1D2Z A;  4EWI A;  4RHW E;  4E9M A;  3EZQ B;  2L9M A;  1CY5 A;  2IB1 A;  4F44 A;  1DGN A;  1E3Y A;  2HM2 Q;  4N1L A;  2GF5 A;  2BBZ A;  4F42 A;  1C15 A;  2G7R A;  4RHW A;  4FH0 A;  4N1K A;  1Z6T A;  2DBD A;  3EZQ A;  2LWD A;  2LWE A;  3YGS P;  2YQF A;  4I16 A;  4N1J A;  2N1F A;  3J63 A;  2M5V A;  1UCP A;  4QOB A;  2D96 A;  2YVI A;  2DBF A;  3T6P A;  3YGS C;  4UZ0 A;  2DO9 A;  1DDF A;  2P1H A;  2NZ7 A;  4M9X A;  2N00 A;  2O71 A;  1N3K A;  2VGQ A;  2XV9 A;  4M9Z A;  1E41 A;  2MS7 A;  2MJM A;  2MS8 A;  4P4H I;  1A1W A;  1WMG A;  3MOP A;  2BBR A;  2LS7 A;  2A5Y B;  2YGS A;  4NQK A;  1A1Z A;  2MPC A;  3KAT A;  2KM6 A;  4LWD A;  1D2Z B;  2N7Z A;  4JQW A;  1ICH A;  4ZBW A;  4A2Q A;  1FAD A;  4M9S A;  2DBH A;  3LQR A;  4O6X A;  3J6J A; 
#chains in the Genus database with same CATH homology
 1CWW A;  4O7Q A;  3CL3 A;  1PN5 A;  4DWN A;  3MOP K;  4IZ7 B;  4IZ5 E;  3LQQ A;  3MOP G;  4O9F A;  2F1S A;  2L6A A;  4D8O A;  2N83 A;  1WH4 A;  3QF2 A;  1YGO A;  2N80 A;  2NAQ A;  2OF5 A;  4IZA B;  3CRD A;  2YU0 A;  2A9I A;  4A2W A;  2MN4 A;  2B1W A;  1WXP A;  4JUP A;  2OF5 H;  4O9L A;  2DBG A;  4P4H A;  2N97 A;  2KN6 A;  2NSN A;  2MB9 A;  1NGR A;  1D2Z A;  4EWI A;  4RHW E;  4E9M A;  3EZQ B;  2L9M A;  1CY5 A;  2IB1 A;  4F44 A;  1DGN A;  1E3Y A;  2HM2 Q;  4N1L A;  2GF5 A;  2BBZ A;  4F42 A;  1C15 A;  2G7R A;  4RHW A;  4FH0 A;  4N1K A;  1Z6T A;  2DBD A;  3EZQ A;  2LWD A;  2LWE A;  3YGS P;  2YQF A;  4I16 A;  4N1J A;  2N1F A;  3J63 A;  2M5V A;  1UCP A;  4QOB A;  2D96 A;  2YVI A;  2DBF A;  3T6P A;  3YGS C;  4UZ0 A;  2DO9 A;  1DDF A;  2P1H A;  2NZ7 A;  4M9X A;  2N00 A;  2O71 A;  1N3K A;  2VGQ A;  2XV9 A;  4M9Z A;  1E41 A;  2MS7 A;  2MJM A;  2MS8 A;  4P4H I;  1A1W A;  1WMG A;  3MOP A;  2BBR A;  2LS7 A;  2A5Y B;  2YGS A;  4NQK A;  1A1Z A;  2MPC A;  3KAT A;  2KM6 A;  4LWD A;  1D2Z B;  2N7Z A;  4JQW A;  1ICH A;  4ZBW A;  4A2Q A;  1FAD A;  4M9S A;  2DBH A;  3LQR A;  4O6X A;  3J6J A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...