2YVWA

Crystal structure of udp-n-acetylglucosamine 1-carboxyvinyltransferase from aquifex aeolicus vf5
Total Genus 146
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
146
sequence length
416
structure length
416
Chain Sequence
YRDYFVIRGGKPLTGKVKISGAKNAALPIMFATILTEEPCTITNVPDLLDVRNTLLLLRELGAELEFLNNTVFINPSINSFITNQEIIRRMRASVLSLGPLLGRFGRAVVGLPGGCSIGARPIDQHLKFFKEAGADVEVREGYVYVNLKEKRRVHFKFDLVTVTGTENALLYLASVPEESILENIALEPEVMDLIEVLKKMGAHVKVEGRSAYVKGSENLKGFTHSVIPDRIEAGTFMVGAVLTDGEILLENARINHLRAVVEKLKLIGGEVVEENGNLRVFRKESLRACDIETQVYPGFPTDMQAQFMALLSVAKGKSRIKENIFEHRFHHAQELNRLGANITVRGNTAYVEGVERLYGSEVYSTDLRASASLVLAGLVAQGETVVRDVYHLDRGYEKLEEKLKKLGADIERVSE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of UDP-N-acetylglucosamine 1-carboxyvinyltransferase from Aquifex aeolicus VF5
rcsb
molecule tags Transferase
source organism Aquifex aeolicus
molecule keywords UDP-N-acetylglucosamine 1-carboxyvinyltransferase
total genus 146
structure length 416
sequence length 416
ec nomenclature ec 2.5.1.7: UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
pdb deposition date 2007-04-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00275 EPSP_synthase EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.65.10.10 Alpha Beta Alpha-beta prism UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain Enolpyruvate transferase domain 2yvwA01
3.65.10.10 Alpha Beta Alpha-beta prism UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain Enolpyruvate transferase domain 2yvwA02
3SPBA 3RMTA 4R7UA 1X8TA 3VCYA 3SWQA 1RF6A 4EIIA 3ROIA 1UAEA 5BUFA 1Q36A 4E7BA 2O15A 2GG6A 3TI2A 3KR6A 2QFSA 1X8RA 3FJXA 2PQDA 2O0XA 2RL2A 3SWAA 3KQJA 1DLGA 4E7CA 3LTHA 4GFPA 1YBGA 2O0BA 3R38A 3ZH3A 3V4TA 1Q3GA 2QFUA 3SG1A 3V5VA 3SLHA 2QFTA 1EYNA 1RYWA 4E7DA 4N3PA 2RL1A 1P88A 3KQAA 2AA9A 4EGRA 2QFQA 4E7FA 3SWGA 4ZNDA 3ISSA 1G6TA 1NAWA 2GGAA 4FQDA 3SWEA 1A2NA 2O0EA 2BJBA 3FK0A 1MI4A 4E7GA 2AAYA 2GGDA 3SWIA 2Z2CA 1EJDA 4E7EA 1RF4A 2O0ZA 5BS5A 1EJCA 3SU9A 2O0DA 2PQCA 3ZH4A 1P89A 3FJZA 1G6SA 2GG4A 3FK1A 3SWDA 2PQ9A 2YVWA 5BQ2A 3UPKA 3TR1A 1RF5A 2PQBA 3NVSA 5U4HA
chains in the Genus database with same CATH superfamily
3SPBA 3RMTA 4R7UA 1X8TA 3VCYA 3SWQA 1RF6A 4EIIA 3ROIA 1UAEA 5BUFA 1Q36A 4E7BA 2O15A 2GG6A 1QMIA 3TI2A 3KR6A 2QFSA 1X8RA 3FJXA 2PQDA 3TW3A 2O0XA 4O8JA 2RL2A 3SWAA 3KQJA 1DLGA 3TUTA 4E7CA 3LTHA 4GFPA 1YBGA 2O0BA 3R38A 3ZH3A 3V4TA 3PQVA 1Q3GA 2QFUA 3SG1A 3V5VA 4CLQA 3SLHA 2QFTA 3TUXA 1EYNA 1RYWA 4E7DA 4N3PA 2RL1A 1P88A 3KQAA 3KGDA 2AA9A 4EGRA 2QFQA 4E7FA 3SWGA 4ZNDA 3ISSA 1G6TA 1NAWA 2GGAA 4FQDA 3SWEA 3TV1A 1A2NA 2O0EA 2BJBA 3FK0A 1MI4A 4E7GA 2AAYA 2GGDA 3SWIA 2Z2CA 1EJDA 4E7EA 1RF4A 1QMHA 2O0ZA 5BS5A 1EJCA 3SU9A 2O0DA 2PQCA 3ZH4A 1P89A 3FJZA 4O89A 1G6SA 2GG4A 3FK1A 3SWDA 2PQ9A 2YVWA 5BQ2A 3UPKA 3TR1A 1RF5A 2PQBA 3NVSA 5U4HA
chains in the Genus database with same CATH topology
3SPBA 3RMTA 4R7UA 1X8TA 3VCYA 3SWQA 1RF6A 4EIIA 3ROIA 1UAEA 5BUFA 1Q36A 4E7BA 2O15A 2GG6A 3TI2A 3KR6A 2QFSA 1X8RA 3FJXA 2PQDA 2O0XA 2RL2A 3SWAA 3KQJA 1DLGA 4E7CA 3LTHA 4GFPA 1YBGA 2O0BA 3R38A 3ZH3A 3V4TA 1Q3GA 2QFUA 3SG1A 3V5VA 3SLHA 2QFTA 1EYNA 1RYWA 4E7DA 4N3PA 2RL1A 1P88A 3KQAA 2AA9A 4EGRA 2QFQA 4E7FA 3SWGA 4ZNDA 3ISSA 1G6TA 1NAWA 2GGAA 4FQDA 3SWEA 1A2NA 2O0EA 2BJBA 3FK0A 1MI4A 4E7GA 2AAYA 2GGDA 3SWIA 2Z2CA 1EJDA 4E7EA 1RF4A 2O0ZA 5BS5A 1EJCA 3SU9A 2O0DA 2PQCA 3ZH4A 1P89A 3FJZA 1G6SA 2GG4A 3FK1A 3SWDA 2PQ9A 2YVWA 5BQ2A 3UPKA 3TR1A 1RF5A 2PQBA 3NVSA 5U4HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SPB A;  3RMT A;  4R7U A;  1X8T A;  3VCY A;  3SWQ A;  1RF6 A;  4EII A;  3ROI A;  1UAE A;  5BUF A;  1Q36 A;  4E7B A;  2O15 A;  2GG6 A;  3TI2 A;  3KR6 A;  2QFS A;  1X8R A;  3FJX A;  2PQD A;  2O0X A;  2RL2 A;  3SWA A;  3KQJ A;  1DLG A;  4E7C A;  3LTH A;  4GFP A;  1YBG A;  2O0B A;  3R38 A;  3ZH3 A;  3V4T A;  1Q3G A;  2QFU A;  3SG1 A;  3V5V A;  3SLH A;  2QFT A;  1EYN A;  1RYW A;  4E7D A;  4N3P A;  2RL1 A;  1P88 A;  3KQA A;  2AA9 A;  4EGR A;  2QFQ A;  4E7F A;  3SWG A;  4ZND A;  3ISS A;  1G6T A;  1NAW A;  2GGA A;  4FQD A;  3SWE A;  1A2N A;  2O0E A;  2BJB A;  3FK0 A;  1MI4 A;  4E7G A;  2AAY A;  2GGD A;  3SWI A;  2Z2C A;  1EJD A;  4E7E A;  1RF4 A;  2O0Z A;  5BS5 A;  1EJC A;  3SU9 A;  2O0D A;  2PQC A;  3ZH4 A;  1P89 A;  3FJZ A;  1G6S A;  2GG4 A;  3FK1 A;  3SWD A;  2PQ9 A;  2YVW A;  5BQ2 A;  3UPK A;  3TR1 A;  1RF5 A;  2PQB A;  3NVS A;  5U4H A; 
#chains in the Genus database with same CATH topology
 3SPB A;  3RMT A;  4R7U A;  1X8T A;  3VCY A;  3SWQ A;  1RF6 A;  4EII A;  3ROI A;  1UAE A;  5BUF A;  1Q36 A;  4E7B A;  2O15 A;  2GG6 A;  1QMI A;  3TI2 A;  3KR6 A;  2QFS A;  1X8R A;  3FJX A;  2PQD A;  3TW3 A;  2O0X A;  4O8J A;  2RL2 A;  3SWA A;  3KQJ A;  1DLG A;  3TUT A;  4E7C A;  3LTH A;  4GFP A;  1YBG A;  2O0B A;  3R38 A;  3ZH3 A;  3V4T A;  3PQV A;  1Q3G A;  2QFU A;  3SG1 A;  3V5V A;  4CLQ A;  3SLH A;  2QFT A;  3TUX A;  1EYN A;  1RYW A;  4E7D A;  4N3P A;  2RL1 A;  1P88 A;  3KQA A;  3KGD A;  2AA9 A;  4EGR A;  2QFQ A;  4E7F A;  3SWG A;  4ZND A;  3ISS A;  1G6T A;  1NAW A;  2GGA A;  4FQD A;  3SWE A;  3TV1 A;  1A2N A;  2O0E A;  2BJB A;  3FK0 A;  1MI4 A;  4E7G A;  2AAY A;  2GGD A;  3SWI A;  2Z2C A;  1EJD A;  4E7E A;  1RF4 A;  1QMH A;  2O0Z A;  5BS5 A;  1EJC A;  3SU9 A;  2O0D A;  2PQC A;  3ZH4 A;  1P89 A;  3FJZ A;  4O89 A;  1G6S A;  2GG4 A;  3FK1 A;  3SWD A;  2PQ9 A;  2YVW A;  5BQ2 A;  3UPK A;  3TR1 A;  1RF5 A;  2PQB A;  3NVS A;  5U4H A; 
#chains in the Genus database with same CATH homology
 3SPB A;  3RMT A;  4R7U A;  1X8T A;  3VCY A;  3SWQ A;  1RF6 A;  4EII A;  3ROI A;  1UAE A;  5BUF A;  1Q36 A;  4E7B A;  2O15 A;  2GG6 A;  3TI2 A;  3KR6 A;  2QFS A;  1X8R A;  3FJX A;  2PQD A;  2O0X A;  2RL2 A;  3SWA A;  3KQJ A;  1DLG A;  4E7C A;  3LTH A;  4GFP A;  1YBG A;  2O0B A;  3R38 A;  3ZH3 A;  3V4T A;  1Q3G A;  2QFU A;  3SG1 A;  3V5V A;  3SLH A;  2QFT A;  1EYN A;  1RYW A;  4E7D A;  4N3P A;  2RL1 A;  1P88 A;  3KQA A;  2AA9 A;  4EGR A;  2QFQ A;  4E7F A;  3SWG A;  4ZND A;  3ISS A;  1G6T A;  1NAW A;  2GGA A;  4FQD A;  3SWE A;  1A2N A;  2O0E A;  2BJB A;  3FK0 A;  1MI4 A;  4E7G A;  2AAY A;  2GGD A;  3SWI A;  2Z2C A;  1EJD A;  4E7E A;  1RF4 A;  2O0Z A;  5BS5 A;  1EJC A;  3SU9 A;  2O0D A;  2PQC A;  3ZH4 A;  1P89 A;  3FJZ A;  1G6S A;  2GG4 A;  3FK1 A;  3SWD A;  2PQ9 A;  2YVW A;  5BQ2 A;  3UPK A;  3TR1 A;  1RF5 A;  2PQB A;  3NVS A;  5U4H A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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