2YXCA

The h25m mutant of tetraheme cytochrome c3 from desulfovibrio vulgaris miyazaki f
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
107
structure length
107
Chain Sequence
APKAPADGLKMDKTKQPVVFNHSTMKAVKCGDCHHPVNGKEDYQKCATAGCHDNMDKKDKSAKGYYHAMHDKGTKFKSCVGCHLETAGADAAKKKELTGCKGSKCHS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords Cytochrome c3
publication title Strategic roles of axial histidines in structure formation and redox regulation of tetraheme cytochrome c3.
pubmed doi rcsb
source organism Desulfovibrio vulgaris str. 'miyazaki f'
total genus 24
structure length 107
sequence length 107
ec nomenclature
pdb deposition date 2007-04-26
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.10.10 Alpha Beta Alpha-Beta Complex Cytochrome C3 Cytochrome C3 2yxcA00
2BPNA 4HDLA 1L3OA 2LZZA 1NEWA 1LM2A 1QN1A 1EHJA 3H34A 1F22A 2MZ9A 3OUQA 3CARA 1UPDA 1MDVA 3SELX 1OFYA 1RWJA 2CYMA 1OFWA 1IT1A 1J0PA 3CAOA 3H33A 2FFNA 1UP9A 2A3MA 2BQ4A 1J0OA 2EWUA 3OV0A 19HCA 2CVCA 2Z47A 3BXUA 4HC3A 3CYRA 1QN0A 3SJ0X 1I77A 1WR5A 1GWSA 4HB6A 2N91A 3H4NA 1CZJA 1OS6A 2EWIA 3OUEA 2CY3A 1GMBA 3SJ1X 1AQEA 2LDOA 1GYOA 4HB8A 1W7OA 4HAJA 2EWKA 2KSUA 2YYWA 1H29A 1A2IA 2E84A 1DUWA 4HBFA 3SJ4X 1KWJA 2CTHA 2YXCA 2KMYA 2CDVA 1WADA 1Z1NX 2A3PA 2YYXA 1HH5A 1GM4A
chains in the Genus database with same CATH superfamily
2BPNA 4HDLA 1L3OA 2LZZA 1NEWA 1LM2A 1QN1A 1EHJA 3H34A 1F22A 2MZ9A 3OUQA 3CARA 1UPDA 1MDVA 3SELX 1OFYA 1RWJA 2CYMA 1OFWA 1IT1A 1J0PA 3CAOA 3H33A 2FFNA 1UP9A 2A3MA 2BQ4A 1J0OA 2EWUA 3OV0A 19HCA 2CVCA 2Z47A 3BXUA 4HC3A 3CYRA 1QN0A 3SJ0X 1I77A 1WR5A 1GWSA 4HB6A 2N91A 3H4NA 1CZJA 1OS6A 2EWIA 3OUEA 2CY3A 1GMBA 3SJ1X 1AQEA 2LDOA 1GYOA 4HB8A 1W7OA 4HAJA 2EWKA 2KSUA 2YYWA 1H29A 1A2IA 2E84A 1DUWA 4HBFA 3SJ4X 1KWJA 2CTHA 2YXCA 2KMYA 2CDVA 1WADA 1Z1NX 2A3PA 2YYXA 1HH5A 1GM4A
chains in the Genus database with same CATH topology
2BPNA 4HDLA 1L3OA 2LZZA 1NEWA 1LM2A 1QN1A 1EHJA 3H34A 1F22A 2MZ9A 3OUQA 3CARA 1UPDA 1MDVA 3SELX 1OFYA 1RWJA 2CYMA 1OFWA 1IT1A 1J0PA 3CAOA 3H33A 2FFNA 1UP9A 2A3MA 2BQ4A 1J0OA 2EWUA 3OV0A 19HCA 2CVCA 2Z47A 3BXUA 4HC3A 3CYRA 1QN0A 3SJ0X 1I77A 1WR5A 1GWSA 4HB6A 2N91A 3H4NA 1CZJA 1OS6A 2EWIA 3OUEA 2CY3A 1GMBA 3SJ1X 1AQEA 2LDOA 1GYOA 4HB8A 1W7OA 4HAJA 2EWKA 2KSUA 2YYWA 1H29A 1A2IA 2E84A 1DUWA 4HBFA 3SJ4X 1KWJA 2CTHA 2YXCA 2KMYA 2CDVA 1WADA 1Z1NX 2A3PA 2YYXA 1HH5A 1GM4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BPN A;  4HDL A;  1L3O A;  2LZZ A;  1NEW A;  1LM2 A;  1QN1 A;  1EHJ A;  3H34 A;  1F22 A;  2MZ9 A;  3OUQ A;  3CAR A;  1UPD A;  1MDV A;  3SEL X;  1OFY A;  1RWJ A;  2CYM A;  1OFW A;  1IT1 A;  1J0P A;  3CAO A;  3H33 A;  2FFN A;  1UP9 A;  2A3M A;  2BQ4 A;  1J0O A;  2EWU A;  3OV0 A;  19HC A;  2CVC A;  2Z47 A;  3BXU A;  4HC3 A;  3CYR A;  1QN0 A;  3SJ0 X;  1I77 A;  1WR5 A;  1GWS A;  4HB6 A;  2N91 A;  3H4N A;  1CZJ A;  1OS6 A;  2EWI A;  3OUE A;  2CY3 A;  1GMB A;  3SJ1 X;  1AQE A;  2LDO A;  1GYO A;  4HB8 A;  1W7O A;  4HAJ A;  2EWK A;  2KSU A;  2YYW A;  1H29 A;  1A2I A;  2E84 A;  1DUW A;  4HBF A;  3SJ4 X;  1KWJ A;  2CTH A;  2YXC A;  2KMY A;  2CDV A;  1WAD A;  1Z1N X;  2A3P A;  2YYX A;  1HH5 A;  1GM4 A; 
#chains in the Genus database with same CATH topology
 2BPN A;  4HDL A;  1L3O A;  2LZZ A;  1NEW A;  1LM2 A;  1QN1 A;  1EHJ A;  3H34 A;  1F22 A;  2MZ9 A;  3OUQ A;  3CAR A;  1UPD A;  1MDV A;  3SEL X;  1OFY A;  1RWJ A;  2CYM A;  1OFW A;  1IT1 A;  1J0P A;  3CAO A;  3H33 A;  2FFN A;  1UP9 A;  2A3M A;  2BQ4 A;  1J0O A;  2EWU A;  3OV0 A;  19HC A;  2CVC A;  2Z47 A;  3BXU A;  4HC3 A;  3CYR A;  1QN0 A;  3SJ0 X;  1I77 A;  1WR5 A;  1GWS A;  4HB6 A;  2N91 A;  3H4N A;  1CZJ A;  1OS6 A;  2EWI A;  3OUE A;  2CY3 A;  1GMB A;  3SJ1 X;  1AQE A;  2LDO A;  1GYO A;  4HB8 A;  1W7O A;  4HAJ A;  2EWK A;  2KSU A;  2YYW A;  1H29 A;  1A2I A;  2E84 A;  1DUW A;  4HBF A;  3SJ4 X;  1KWJ A;  2CTH A;  2YXC A;  2KMY A;  2CDV A;  1WAD A;  1Z1N X;  2A3P A;  2YYX A;  1HH5 A;  1GM4 A; 
#chains in the Genus database with same CATH homology
 2BPN A;  4HDL A;  1L3O A;  2LZZ A;  1NEW A;  1LM2 A;  1QN1 A;  1EHJ A;  3H34 A;  1F22 A;  2MZ9 A;  3OUQ A;  3CAR A;  1UPD A;  1MDV A;  3SEL X;  1OFY A;  1RWJ A;  2CYM A;  1OFW A;  1IT1 A;  1J0P A;  3CAO A;  3H33 A;  2FFN A;  1UP9 A;  2A3M A;  2BQ4 A;  1J0O A;  2EWU A;  3OV0 A;  19HC A;  2CVC A;  2Z47 A;  3BXU A;  4HC3 A;  3CYR A;  1QN0 A;  3SJ0 X;  1I77 A;  1WR5 A;  1GWS A;  4HB6 A;  2N91 A;  3H4N A;  1CZJ A;  1OS6 A;  2EWI A;  3OUE A;  2CY3 A;  1GMB A;  3SJ1 X;  1AQE A;  2LDO A;  1GYO A;  4HB8 A;  1W7O A;  4HAJ A;  2EWK A;  2KSU A;  2YYW A;  1H29 A;  1A2I A;  2E84 A;  1DUW A;  4HBF A;  3SJ4 X;  1KWJ A;  2CTH A;  2YXC A;  2KMY A;  2CDV A;  1WAD A;  1Z1N X;  2A3P A;  2YYX A;  1HH5 A;  1GM4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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