2YYKA

Crystal structure of the mutant of hpab (t198i, a276g, and r466h)
Total Genus 171
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
171
sequence length
476
structure length
472
Chain Sequence
ARTGAEYIEALKTRPPNLWYKGEKVEDPTTHPVFRGIVRTMAALYDLQHDPRYREVLTYEEEGKRHGMSFLIPKTKEDLKRRGQAYKLWADQNLGMMGRSPDYLNAVVMAYAASADYFGEFAENVRNYYRYLRDQDLATTHALTNPQVNRARQPDPYIPVGVVKQTEKGIVVRGARMTATFPLADEVLIFPSILLQAGSEKYALAFALPTSTPGLHFVCREALVGGDSPFDHPLSSRVEEMDCLVIFDDVLVPWERVFILGNVELCNNAYGATGALNHMAHQVVALKTAKTEAFLGVAALMAEGIGADVYGHVQEKIAEIIVYLEAMRAFWTRAEEEAKENAYGLLVPDRGALDGARNLYPRLYPRIREILEQIGASGLITLPSEKDFKGPLGPFLEKFLQGAALEAKERVALFRLAWDMTLSGFGARQELYERFFFGDPVRMYQTLYNVYNKEPYKERIHAFLKESLKVFE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
source organism Thermus thermophilus
publication title Crystal Structure of the Oxygenase Component (HpaB) of the 4-Hydroxyphenylacetate 3-Monooxygenase from Thermus thermophilus HB8
pubmed doi rcsb
molecule keywords 4-hydroxyphenylacetate-3-hydroxylase
total genus 171
structure length 472
sequence length 476
ec nomenclature ec 1.14.14.9: 4-hydroxyphenylacetate 3-monooxygenase.
pdb deposition date 2007-04-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03241 HpaB 4-hydroxyphenylacetate 3-hydroxylase C terminal
A PF11794 HpaB_N 4-hydroxyphenylacetate 3-hydroxylase N terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3140.10 Mainly Alpha Orthogonal Bundle 4-hydroxybutyryl-coa dehydratase, domain 1 4-hydroxybutyryl-coa dehydratase, domain 1 2yykA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 2yykA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 2yykA02
4N5FA 2A1TA 2YYLA 3BNFA 3UU9A 4WJYA 4NXLA 4KTOA 3L1TA 2CX9A 3OWMA 2PG0A 3F29A 4ZXVA 1OAHA 4DOYA 1SIRA 2JBRA 4RM7A 1R2JA 4JEKA 1IVHA 4O5MA 2EBAA 1FS7A 2IX6A 4IV6A 3BNJA 3M9VA 3MMOA 4KCFA 4L1FA 3SCEA 1BUCA 3P4TA 4G5EA 1T9GA 2WBIA 3D1IA 2D29A 3GQTA 2R0MA 3EOMA 3R7KA 2J7AA 3PFDA 2OT4A 4L3XA 3MXLA 2VIGA 3SXQA 1W07A 1IS2A 1EGEA 2C12A 2C0UA 3II9A 3MPIA 4P13A 3FCJA 4IRNA 4L38A 4L3YA 2E81A 4Q4UA 2E80A 3SWOA 3AFFA 2RFQA 3D9DA 1FS8A 2DDHA 3MDDA 2VR0A 3D9EA 3BNHA 5K3HA 5K3JA 3RKHA 2ZO5A 2REHA 3GNCA 4HR3A 3D6BA 3B96A 2YYMA 3LGQA 3SF6A 3D9FA 3S7WA 4XVXA 3MDEA 2YYJA 1GU6A 3D9GA 1SIQA 1JQIA 4Q5BA 3FO3A 2JIFA 3AFEA 1UDYA 2DVLA 4W9UA 3MPJA 3NF4A 4X28A 1EGDA 4M9AA 2FONA 2UXWA 2RF7A 1FS9A 2YYGA 1WS9A 3HWCA 4ZYJA 2Z1QA 4X28C 1U8VA 2RDZA 4U83A 4Q5CA 2YYIA 1EGCA 3X0XA 1QDBA 4L3ZA 2YYKA 3GM6A 2OR0A 4Q0TA 1RX0A 2ZAFA 2R0NA 3TORA 3TTBA 3BNGA 3OIBA 4Q17A 4OO2A 3LG1A 3EONA 3MKHA 2IX5A 1UKWA 3UBRA 2JBTA 2JBSA 3OWAA 4Q1OA 5K3IA 3X0YA 5K3GA
chains in the Genus database with same CATH superfamily
4N5FA 4E01A 2A1TA 2YYLA 3BNFA 3UU9A 4WJYA 1XG2B 4FF1A 4NXLA 4KTOA 3L1TA 1Y8PA 2Q8GA 4E02A 4JIZA 2ZDYA 3CRKA 2BTZA 2CX9A 3OWMA 2Q8FA 4FF2A 2R05A 1JM6A 5B5VA 2PG0A 3F29A 4ZXVA 1OAHA 1K8TA 4DOYA 1SIRA 3Q0AA 2JBRA 4RM7A 1R2JA 4JEKA 1IVHA 1S26A 4O5MA 3U33A 4H81A 2EBAA 1FS7A 2IX6A 4IV6A 3BNJA 3DJLA 2FP1A 3M9VA 3MMOA 4KCFA 4L1FA 5M4PA 3SCEA 1BUCA 3P4TA 2EC5A 4AKHA 4G5EA 2LFWA 4KSFA 1T9GA 3Q23A 2WBIA 3D1IA 2D29A 3GQTA 1Y8NA 3N0RA 2R0MA 4LQSB 4FF4A 3EOMA 4KSAA 3R7KA 2J7AA 3PFDA 1RP3A 1GKZA 2CJ5A 2XS8A 4J1VA 2OT4A 4L3XA 2CJ4A 2BU8A 2VIGA 3MXLA 3VKHA 2XQRB 3SXQA 1W07A 1IS2A 1EGEA 5BRMA 5M4NA 1XFZA 1X90A 2C0UA 2C12A 3II9A 3MPIA 1R3BA 3FCJA 2E0AA 4P13A 2HJNA 5J6AA 1RJ4A 2BU7A 4G97A 4HKRA 1GKXA 4IRNA 2BU5A 4L38A 5GJVE 4L3YA 2CJ8A 2FP2A 2E81A 3VADA 4Q4UA 2E80A 5M4KA 3AFFA 3SWOA 5BRKA 2RFQA 2EBHX 4H85A 3D9DA 3Q24A 1K90A 2ZDXA 4E00A 1FS8A 2DDHA 5B6BA 2CJ7A 3C46A 3MDDA 2YGWA 1PK0A 2VR0A 3D9EA 3BNHA 2OEVA 5K3HA 4MP7A 5K3JA 2EBFX 2Q8HA 3RKHA 1LVCA 3TZ4A 2ZO5A 2GBBA 3X29A 2PO4A 2R02A 2REHA 2QR4A 2OEXA 3D6BA 3B96A 3GNCA 4HR3A 2YYMA 3LGQA 4HKSA 4JIOA 3SF6A 4P79A 3D9FA 1PI1A 4XVXA 3S7WA 3MDEA 2YYJA 2ZKJA 4MPCA 1GU6A 4MP2A 3D9GA 1SIQA 1JQIA 4Q5BA 3FO3A 2JIFA 3TZ0A 4QICA 3AFEA 1UDYA 2CJ6A 1X8ZA 2DVLA 1X91A 4MPNA 3MPJA 4W9UA 3VKGA 3NF4A 2Q8IA 4X28A 4F0XA 4FF3A 1EGDA 4M9AA 2FONA 3CRLA 2F6LA 5J71A 2UXWA 3TZ5A 2RF7A 3TZ2A 1FS9A 2BU2A 1XFUA 2YYGA 1WS9A 2OJQA 3HWCA 4ZYJA 4FZ4A 2Z1QA 1XFYA 4X28C 5M4MA 3C2PA 1U8VA 2PNRA 2RDZA 4MPEA 4Q5CA 4U83A 2YYIA 3C3LA 1SK6A 1EGCA 3X0XA 4DZYA 4H7QA 1QDBA 1Y8OA 2R03A 4L3ZA 4AKGA 1K93A 1RJ1A 2YYKA 3GM6A 2OR0A 4Q0TA 1RX0A 2AO2A 1Y0VA 4KS9A 2ZAFA 2R0NA 5B5WA 3D2RA 1XFVA 1XFXA 3TORA 2AZEA 3TTBA 3BNGA 3OIBA 3CE2A 4Q17A 4V26A 4OO2A 3LG1A 4V25A 5EZ3A 3EONA 3MKHA 2IX5A 4LQQB 1XFWA 1UKWA 2BU6A 1SC5A 1GJVA 2JBTA 2JBSA 2VF1A 3OWAA 3UBRA 3Q22A 4Q1OA 4AKIA 2XS1A 3KMLA 4AI6A 5K3IA 3X0YA 5GJWE 5K3GA
chains in the Genus database with same CATH topology
4N5FA 2A1TA 2YYLA 3BNFA 3UU9A 4WJYA 4NXLA 4KTOA 3L1TA 2CX9A 3OWMA 2PG0A 3F29A 4ZXVA 1OAHA 4DOYA 1SIRA 2JBRA 4RM7A 1R2JA 4JEKA 1IVHA 4O5MA 2EBAA 1FS7A 2IX6A 4IV6A 3BNJA 3M9VA 3MMOA 4KCFA 4L1FA 3SCEA 1BUCA 3P4TA 4G5EA 1T9GA 2WBIA 3D1IA 2D29A 3GQTA 2R0MA 3EOMA 3R7KA 2J7AA 3PFDA 2OT4A 4L3XA 3MXLA 2VIGA 3SXQA 1W07A 1IS2A 1EGEA 2C12A 2C0UA 3II9A 3MPIA 4P13A 3FCJA 4IRNA 4L38A 4L3YA 2E81A 4Q4UA 2E80A 3SWOA 3AFFA 2RFQA 3D9DA 1FS8A 2DDHA 3MDDA 2VR0A 3D9EA 3BNHA 5K3HA 5K3JA 3RKHA 2ZO5A 2REHA 3GNCA 4HR3A 3D6BA 3B96A 2YYMA 3LGQA 3SF6A 3D9FA 3S7WA 4XVXA 3MDEA 2YYJA 1GU6A 3D9GA 1SIQA 1JQIA 4Q5BA 3FO3A 2JIFA 3AFEA 1UDYA 2DVLA 4W9UA 3MPJA 3NF4A 4X28A 1EGDA 4M9AA 2FONA 2UXWA 2RF7A 1FS9A 2YYGA 1WS9A 3HWCA 4ZYJA 2Z1QA 4X28C 1U8VA 2RDZA 4U83A 4Q5CA 2YYIA 1EGCA 3X0XA 1QDBA 4L3ZA 2YYKA 3GM6A 2OR0A 4Q0TA 1RX0A 2ZAFA 2R0NA 3TORA 3TTBA 3BNGA 3OIBA 4Q17A 4OO2A 3LG1A 3EONA 3MKHA 2IX5A 1UKWA 3UBRA 2JBTA 2JBSA 3OWAA 4Q1OA 5K3IA 3X0YA 5K3GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4N5F A;  2A1T A;  2YYL A;  3BNF A;  3UU9 A;  4WJY A;  4NXL A;  4KTO A;  3L1T A;  2CX9 A;  3OWM A;  2PG0 A;  3F29 A;  4ZXV A;  1OAH A;  4DOY A;  1SIR A;  2JBR A;  4RM7 A;  1R2J A;  4JEK A;  1IVH A;  4O5M A;  2EBA A;  1FS7 A;  2IX6 A;  4IV6 A;  3BNJ A;  3M9V A;  3MMO A;  4KCF A;  4L1F A;  3SCE A;  1BUC A;  3P4T A;  4G5E A;  1T9G A;  2WBI A;  3D1I A;  2D29 A;  3GQT A;  2R0M A;  3EOM A;  3R7K A;  2J7A A;  3PFD A;  2OT4 A;  4L3X A;  3MXL A;  2VIG A;  3SXQ A;  1W07 A;  1IS2 A;  1EGE A;  2C12 A;  2C0U A;  3II9 A;  3MPI A;  4P13 A;  3FCJ A;  4IRN A;  4L38 A;  4L3Y A;  2E81 A;  4Q4U A;  2E80 A;  3SWO A;  3AFF A;  2RFQ A;  3D9D A;  1FS8 A;  2DDH A;  3MDD A;  2VR0 A;  3D9E A;  3BNH A;  5K3H A;  5K3J A;  3RKH A;  2ZO5 A;  2REH A;  3GNC A;  4HR3 A;  3D6B A;  3B96 A;  2YYM A;  3LGQ A;  3SF6 A;  3D9F A;  3S7W A;  4XVX A;  3MDE A;  2YYJ A;  1GU6 A;  3D9G A;  1SIQ A;  1JQI A;  4Q5B A;  3FO3 A;  2JIF A;  3AFE A;  1UDY A;  2DVL A;  4W9U A;  3MPJ A;  3NF4 A;  4X28 A;  1EGD A;  4M9A A;  2FON A;  2UXW A;  2RF7 A;  1FS9 A;  2YYG A;  1WS9 A;  3HWC A;  4ZYJ A;  2Z1Q A;  4X28 C;  1U8V A;  2RDZ A;  4U83 A;  4Q5C A;  2YYI A;  1EGC A;  3X0X A;  1QDB A;  4L3Z A;  2YYK A;  3GM6 A;  2OR0 A;  4Q0T A;  1RX0 A;  2ZAF A;  2R0N A;  3TOR A;  3TTB A;  3BNG A;  3OIB A;  4Q17 A;  4OO2 A;  3LG1 A;  3EON A;  3MKH A;  2IX5 A;  1UKW A;  3UBR A;  2JBT A;  2JBS A;  3OWA A;  4Q1O A;  5K3I A;  3X0Y A;  5K3G A; 
#chains in the Genus database with same CATH topology
 4N5F A;  4E01 A;  2A1T A;  2YYL A;  3BNF A;  3UU9 A;  4WJY A;  1XG2 B;  4FF1 A;  4NXL A;  4KTO A;  3L1T A;  1Y8P A;  2Q8G A;  4E02 A;  4JIZ A;  2ZDY A;  3CRK A;  2BTZ A;  2CX9 A;  3OWM A;  2Q8F A;  4FF2 A;  2R05 A;  1JM6 A;  5B5V A;  2PG0 A;  3F29 A;  4ZXV A;  1OAH A;  1K8T A;  4DOY A;  1SIR A;  3Q0A A;  2JBR A;  4RM7 A;  1R2J A;  4JEK A;  1IVH A;  1S26 A;  4O5M A;  3U33 A;  4H81 A;  2EBA A;  1FS7 A;  2IX6 A;  4IV6 A;  3BNJ A;  3DJL A;  2FP1 A;  3M9V A;  3MMO A;  4KCF A;  4L1F A;  5M4P A;  3SCE A;  1BUC A;  3P4T A;  2EC5 A;  4AKH A;  4G5E A;  2LFW A;  4KSF A;  1T9G A;  3Q23 A;  2WBI A;  3D1I A;  2D29 A;  3GQT A;  1Y8N A;  3N0R A;  2R0M A;  4LQS B;  4FF4 A;  3EOM A;  4KSA A;  3R7K A;  2J7A A;  3PFD A;  1RP3 A;  1GKZ A;  2CJ5 A;  2XS8 A;  4J1V A;  2OT4 A;  4L3X A;  2CJ4 A;  2BU8 A;  2VIG A;  3MXL A;  3VKH A;  2XQR B;  3SXQ A;  1W07 A;  1IS2 A;  1EGE A;  5BRM A;  5M4N A;  1XFZ A;  1X90 A;  2C0U A;  2C12 A;  3II9 A;  3MPI A;  1R3B A;  3FCJ A;  2E0A A;  4P13 A;  2HJN A;  5J6A A;  1RJ4 A;  2BU7 A;  4G97 A;  4HKR A;  1GKX A;  4IRN A;  2BU5 A;  4L38 A;  5GJV E;  4L3Y A;  2CJ8 A;  2FP2 A;  2E81 A;  3VAD A;  4Q4U A;  2E80 A;  5M4K A;  3AFF A;  3SWO A;  5BRK A;  2RFQ A;  2EBH X;  4H85 A;  3D9D A;  3Q24 A;  1K90 A;  2ZDX A;  4E00 A;  1FS8 A;  2DDH A;  5B6B A;  2CJ7 A;  3C46 A;  3MDD A;  2YGW A;  1PK0 A;  2VR0 A;  3D9E A;  3BNH A;  2OEV A;  5K3H A;  4MP7 A;  5K3J A;  2EBF X;  2Q8H A;  3RKH A;  1LVC A;  3TZ4 A;  2ZO5 A;  2GBB A;  3X29 A;  2PO4 A;  2R02 A;  2REH A;  2QR4 A;  2OEX A;  3D6B A;  3B96 A;  3GNC A;  4HR3 A;  2YYM A;  3LGQ A;  4HKS A;  4JIO A;  3SF6 A;  4P79 A;  3D9F A;  1PI1 A;  4XVX A;  3S7W A;  3MDE A;  2YYJ A;  2ZKJ A;  4MPC A;  1GU6 A;  4MP2 A;  3D9G A;  1SIQ A;  1JQI A;  4Q5B A;  3FO3 A;  2JIF A;  3TZ0 A;  4QIC A;  3AFE A;  1UDY A;  2CJ6 A;  1X8Z A;  2DVL A;  1X91 A;  4MPN A;  3MPJ A;  4W9U A;  3VKG A;  3NF4 A;  2Q8I A;  4X28 A;  4F0X A;  4FF3 A;  1EGD A;  4M9A A;  2FON A;  3CRL A;  2F6L A;  5J71 A;  2UXW A;  3TZ5 A;  2RF7 A;  3TZ2 A;  1FS9 A;  2BU2 A;  1XFU A;  2YYG A;  1WS9 A;  2OJQ A;  3HWC A;  4ZYJ A;  4FZ4 A;  2Z1Q A;  1XFY A;  4X28 C;  5M4M A;  3C2P A;  1U8V A;  2PNR A;  2RDZ A;  4MPE A;  4Q5C A;  4U83 A;  2YYI A;  3C3L A;  1SK6 A;  1EGC A;  3X0X A;  4DZY A;  4H7Q A;  1QDB A;  1Y8O A;  2R03 A;  4L3Z A;  4AKG A;  1K93 A;  1RJ1 A;  2YYK A;  3GM6 A;  2OR0 A;  4Q0T A;  1RX0 A;  2AO2 A;  1Y0V A;  4KS9 A;  2ZAF A;  2R0N A;  5B5W A;  3D2R A;  1XFV A;  1XFX A;  3TOR A;  2AZE A;  3TTB A;  3BNG A;  3OIB A;  3CE2 A;  4Q17 A;  4V26 A;  4OO2 A;  3LG1 A;  4V25 A;  5EZ3 A;  3EON A;  3MKH A;  2IX5 A;  4LQQ B;  1XFW A;  1UKW A;  2BU6 A;  1SC5 A;  1GJV A;  2JBT A;  2JBS A;  2VF1 A;  3OWA A;  3UBR A;  3Q22 A;  4Q1O A;  4AKI A;  2XS1 A;  3KML A;  4AI6 A;  5K3I A;  3X0Y A;  5GJW E;  5K3G A; 
#chains in the Genus database with same CATH homology
 4N5F A;  2A1T A;  2YYL A;  3BNF A;  3UU9 A;  4WJY A;  4NXL A;  4KTO A;  3L1T A;  2CX9 A;  3OWM A;  2PG0 A;  3F29 A;  4ZXV A;  1OAH A;  4DOY A;  1SIR A;  2JBR A;  4RM7 A;  1R2J A;  4JEK A;  1IVH A;  4O5M A;  2EBA A;  1FS7 A;  2IX6 A;  4IV6 A;  3BNJ A;  3M9V A;  3MMO A;  4KCF A;  4L1F A;  3SCE A;  1BUC A;  3P4T A;  4G5E A;  1T9G A;  2WBI A;  3D1I A;  2D29 A;  3GQT A;  2R0M A;  3EOM A;  3R7K A;  2J7A A;  3PFD A;  2OT4 A;  4L3X A;  3MXL A;  2VIG A;  3SXQ A;  1W07 A;  1IS2 A;  1EGE A;  2C12 A;  2C0U A;  3II9 A;  3MPI A;  4P13 A;  3FCJ A;  4IRN A;  4L38 A;  4L3Y A;  2E81 A;  4Q4U A;  2E80 A;  3SWO A;  3AFF A;  2RFQ A;  3D9D A;  1FS8 A;  2DDH A;  3MDD A;  2VR0 A;  3D9E A;  3BNH A;  5K3H A;  5K3J A;  3RKH A;  2ZO5 A;  2REH A;  3GNC A;  4HR3 A;  3D6B A;  3B96 A;  2YYM A;  3LGQ A;  3SF6 A;  3D9F A;  3S7W A;  4XVX A;  3MDE A;  2YYJ A;  1GU6 A;  3D9G A;  1SIQ A;  1JQI A;  4Q5B A;  3FO3 A;  2JIF A;  3AFE A;  1UDY A;  2DVL A;  4W9U A;  3MPJ A;  3NF4 A;  4X28 A;  1EGD A;  4M9A A;  2FON A;  2UXW A;  2RF7 A;  1FS9 A;  2YYG A;  1WS9 A;  3HWC A;  4ZYJ A;  2Z1Q A;  4X28 C;  1U8V A;  2RDZ A;  4U83 A;  4Q5C A;  2YYI A;  1EGC A;  3X0X A;  1QDB A;  4L3Z A;  2YYK A;  3GM6 A;  2OR0 A;  4Q0T A;  1RX0 A;  2ZAF A;  2R0N A;  3TOR A;  3TTB A;  3BNG A;  3OIB A;  4Q17 A;  4OO2 A;  3LG1 A;  3EON A;  3MKH A;  2IX5 A;  1UKW A;  3UBR A;  2JBT A;  2JBS A;  3OWA A;  4Q1O A;  5K3I A;  3X0Y A;  5K3G A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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