2YYKA

Crystal structure of the mutant of hpab (t198i, a276g, and r466h)
Total Genus 171
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
171
sequence length
476
structure length
472
Chain Sequence
b'ARTGAEYIEALKTRPPNLWYKGEKVEDPTTHPVFRGIVRTMAALYDLQHDPRYREVLTYEEEGKRHGMSFLIPKTKEDLKRRGQAYKLWADQNLGMMGRSPDYLNAVVMAYAASADYFGEFAENVRNYYRYLRDQDLATTHALTNPQVNRARQPDPYIPVGVVKQTEKGIVVRGARMTATFPLADEVLIFPSILLQAGSEKYALAFALPTSTPGLHFVCREALVGGDSPFDHPLSSRVEEMDCLVIFDDVLVPWERVFILGNVELCNNAYGATGALNHMAHQVVALKTAKTEAFLGVAALMAEGIGADVYGHVQEKIAEIIVYLEAMRAFWTRAEEEAKENAYGLLVPDRGALDGARNLYPRLYPRIREILEQIGASGLITLPSEKDFKGPLGPFLEKFLQGAALEAKERVALFRLAWDMTLSGFGARQELYERFFFGDPVRMYQTLYNVYNKEPYKERIHAFLKESLKVFE'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of the Oxygenase Component (HpaB) of the 4-Hydroxyphenylacetate 3-Monooxygenase from Thermus thermophilus HB8
pubmed doi rcsb
molecule keywords 4-hydroxyphenylacetate-3-hydroxylase
source organism Thermus thermophilus
molecule tags Oxidoreductase
total genus 171
structure length 472
sequence length 476
ec nomenclature ec 1.14.14.9: 4-hydroxyphenylacetate 3-monooxygenase.
pdb deposition date 2007-04-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03241 HpaB 4-hydroxyphenylacetate 3-hydroxylase C terminal
A PF11794 HpaB_N 4-hydroxyphenylacetate 3-hydroxylase N terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3140.10 Mainly Alpha Orthogonal Bundle 4-hydroxybutyryl-coa dehydratase, domain 1 4-hydroxybutyryl-coa dehydratase, domain 1 2yykA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 2yykA03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 2yykA02
2DVLA 3FCJA 3LG1A 4X28A 4W9UA 1QDBA 2JBSA 1FS7A 3TORA 1FS9A 2C12A 3MXLA 2JIFA 3MPJA 1UDYA 4NXLA 3MDDA 3P4TA 2RF7A 4DOYA 2YYKA 3MKHA 3MPIA 4L3XA 4P13A 4L1FA 4Q5BA 3M9VA 2A1TA 1IVHA 4IRNA 2R0MA 4L3YA 3SXQA 3EOMA 2JBTA 3BNHA 2E81A 2YYGA 1R2JA 3D1IA 4JEKA 3BNFA 2J7AA 2YYMA 2RDZA 3BNGA 3D6BA 4U83A 4ZXVA 2R0NA 3SF6A 4Q0TA 3II9A 4ZYJA 3RKHA 3LGQA 2YYLA 3MMOA 2FONA 4M9AA 2RFQA 2DDHA 2OT4A 3R7KA 4OO2A 3GM6A 1RX0A 4L38A 1T9GA 3UU9A 2E80A 2JBRA 4KCFA 4KTOA 4Q4UA 4HR3A 4Q1OA 3NF4A 3L1TA 1U8VA 3BNJA 1SIRA 2REHA 2D29A 3PFDA 1EGEA 1FS8A 1GU6A 1BUCA 3FO3A 3SWOA 4RM7A 3OIBA 3X0XA 4G5EA 1UKWA 1WS9A 3D9GA 3AFEA 5K3IA 2VIGA 3B96A 2C0UA 2ZAFA 3AFFA 4WJYA 3MDEA 2WBIA 2EBAA 2CX9A 3OWMA 4Q17A 3SCEA 3D9EA 3X0YA 2VR0A 1IS2A 4IV6A 3UBRA 5K3HA 1OAHA 1W07A 2IX5A 1SIQA 4L3ZA 1JQIA 3F29A 4Q5CA 3EONA 4X28C 5K3JA 1EGDA 1EGCA 4N5FA 3GQTA 4O5MA 2YYIA 3TTBA 2PG0A 2UXWA 2YYJA 2IX6A 5K3GA 4XVXA 3D9FA 3OWAA 3S7WA 3GNCA 3D9DA 2Z1QA 2ZO5A 2OR0A 3HWCA
chains in the Genus database with same CATH superfamily
2DVLA 1S26A 3FCJA 3LG1A 3VKGA 4KS9A 4X28A 1GKZA 4E00A 3Q0AA 4W9UA 1QDBA 2JBSA 1FS7A 1X90A 3TORA 1FS9A 2C12A 2BU5A 2OJQA 2JIFA 3MXLA 3MPJA 1UDYA 3D9DA 4AI6A 4HKRA 4NXLA 5M4PA 3MDDA 1XFVA 4LQQB 3P4TA 2Q8IA 2RF7A 4MP7A 2CJ8A 1XFUA 4DOYA 2YYKA 3TZ0A 2FP2A 2HJNA 2EBFX 2LFWA 3MKHA 1XFXA 3MPIA 4L1FA 2YGWA 3M9VA 4L3XA 4P13A 5GJWE 2A1TA 1IVHA 2R03A 2XQRB 2ZKJA 2AZEA 2ZO5A 4IRNA 3D2RA 4V25A 2R0MA 4L3YA 3SXQA 3EOMA 2JBTA 3BNHA 2E81A 4FZ4A 2YYGA 4KSFA 4AKIA 1Y8NA 1R2JA 3D1IA 4H85A 4JEKA 3BNFA 2J7AA 5B5VA 1X91A 4FF3A 4E01A 2R05A 2YYMA 2CJ4A 5BRKA 2RDZA 3BNGA 3CRKA 3D6BA 2BTZA 3KMLA 4HKSA 4U83A 4J1VA 4JIZA 1XFWA 4ZXVA 1SK6A 2R0NA 3Q24A 3SF6A 4Q0TA 2FP1A 3II9A 3TZ5A 3RKHA 4ZYJA 3LGQA 1RP3A 4QICA 2Q8GA 2PO4A 2YYLA 3MMOA 5BRMA 2FONA 2OEXA 2VF1A 4M9AA 1R3BA 1K90A 2RFQA 2DDHA 2OT4A 4KSAA 3R7KA 3VKHA 4OO2A 5J71A 1RJ4A 3GM6A 1RX0A 4L38A 1T9GA 4LQSB 5M4MA 1JM6A 3UU9A 1GKXA 2E80A 2JBRA 4KCFA 3U33A 1RJ1A 4KTOA 4HR3A 4Q4UA 4Q1OA 3NF4A 3L1TA 1K93A 3X29A 4MPEA 1GJVA 2PNRA 1U8VA 1Y8PA 3BNJA 2EBHX 4P79A 1SIRA 2REHA 2D29A 3PFDA 1EGEA 1FS8A 2CJ5A 1GU6A 5GJVE 4Q5BA 3VADA 5B5WA 1BUCA 2GBBA 2E0AA 1SC5A 3FO3A 3SWOA 4RM7A 3OIBA 3X0XA 2BU6A 4DZYA 3Q23A 1PK0A 4G5EA 1UKWA 1WS9A 3D9GA 1Y0VA 3AFEA 5K3IA 4FF1A 2VIGA 3B96A 4MPCA 2C0UA 1LVCA 1X8ZA 3AFFA 4V26A 4WJYA 4AKGA 3MDEA 2WBIA 2EBAA 2CX9A 2R02A 2XS1A 3OWMA 4Q17A 2ZDXA 3SCEA 3D9EA 3DJLA 4FF2A 3X0YA 2BU7A 4MPNA 4AKHA 2VR0A 1IS2A 2BU2A 4IV6A 1K8TA 3UBRA 5M4NA 5K3HA 3C2PA 1OAHA 1W07A 2QR4A 5J6AA 2IX5A 1SIQA 2CJ6A 1XG2B 4L3ZA 2F6LA 5B6BA 1JQIA 2BU8A 2EC5A 2XS8A 3F29A 3N0RA 4Q5CA 3TZ4A 4F0XA 3EONA 4X28C 1Y8OA 5K3JA 1EGDA 1EGCA 4MP2A 3GQTA 4H7QA 4N5FA 4FF4A 3TZ2A 4JIOA 4O5MA 1XFZA 2Q8HA 4G97A 4E02A 2ZDYA 5M4KA 2YYIA 3TTBA 3C3LA 2PG0A 2UXWA 2YYJA 3CE2A 2IX6A 4H81A 5K3GA 3C46A 2AO2A 4XVXA 3Q22A 1XFYA 2CJ7A 2Q8FA 5EZ3A 3D9FA 3OWAA 3CRLA 1PI1A 3S7WA 3GNCA 2OEVA 2Z1QA 2ZAFA 2OR0A 3HWCA
chains in the Genus database with same CATH topology
2DVLA 3FCJA 3LG1A 4X28A 4W9UA 1QDBA 2JBSA 1FS7A 3TORA 1FS9A 2C12A 3MXLA 2JIFA 3MPJA 1UDYA 4NXLA 3MDDA 3P4TA 2RF7A 4DOYA 2YYKA 3MKHA 3MPIA 4L3XA 4P13A 4L1FA 4Q5BA 3M9VA 2A1TA 1IVHA 4IRNA 2R0MA 4L3YA 3SXQA 3EOMA 2JBTA 3BNHA 2E81A 2YYGA 1R2JA 3D1IA 4JEKA 3BNFA 2J7AA 2YYMA 2RDZA 3BNGA 3D6BA 4U83A 4ZXVA 2R0NA 3SF6A 4Q0TA 3II9A 4ZYJA 3RKHA 3LGQA 2YYLA 3MMOA 2FONA 4M9AA 2RFQA 2DDHA 2OT4A 3R7KA 4OO2A 3GM6A 1RX0A 4L38A 1T9GA 3UU9A 2E80A 2JBRA 4KCFA 4KTOA 4Q4UA 4HR3A 4Q1OA 3NF4A 3L1TA 1U8VA 3BNJA 1SIRA 2REHA 2D29A 3PFDA 1EGEA 1FS8A 1GU6A 1BUCA 3FO3A 3SWOA 4RM7A 3OIBA 3X0XA 4G5EA 1UKWA 1WS9A 3D9GA 3AFEA 5K3IA 2VIGA 3B96A 2C0UA 2ZAFA 3AFFA 4WJYA 3MDEA 2WBIA 2EBAA 2CX9A 3OWMA 4Q17A 3SCEA 3D9EA 3X0YA 2VR0A 1IS2A 4IV6A 3UBRA 5K3HA 1OAHA 1W07A 2IX5A 1SIQA 4L3ZA 1JQIA 3F29A 4Q5CA 3EONA 4X28C 5K3JA 1EGDA 1EGCA 4N5FA 3GQTA 4O5MA 2YYIA 3TTBA 2PG0A 2UXWA 2YYJA 2IX6A 5K3GA 4XVXA 3D9FA 3OWAA 3S7WA 3GNCA 3D9DA 2Z1QA 2ZO5A 2OR0A 3HWCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DVL A;  3FCJ A;  3LG1 A;  4X28 A;  4W9U A;  1QDB A;  2JBS A;  1FS7 A;  3TOR A;  1FS9 A;  2C12 A;  3MXL A;  2JIF A;  3MPJ A;  1UDY A;  4NXL A;  3MDD A;  3P4T A;  2RF7 A;  4DOY A;  2YYK A;  3MKH A;  3MPI A;  4L3X A;  4P13 A;  4L1F A;  4Q5B A;  3M9V A;  2A1T A;  1IVH A;  4IRN A;  2R0M A;  4L3Y A;  3SXQ A;  3EOM A;  2JBT A;  3BNH A;  2E81 A;  2YYG A;  1R2J A;  3D1I A;  4JEK A;  3BNF A;  2J7A A;  2YYM A;  2RDZ A;  3BNG A;  3D6B A;  4U83 A;  4ZXV A;  2R0N A;  3SF6 A;  4Q0T A;  3II9 A;  4ZYJ A;  3RKH A;  3LGQ A;  2YYL A;  3MMO A;  2FON A;  4M9A A;  2RFQ A;  2DDH A;  2OT4 A;  3R7K A;  4OO2 A;  3GM6 A;  1RX0 A;  4L38 A;  1T9G A;  3UU9 A;  2E80 A;  2JBR A;  4KCF A;  4KTO A;  4Q4U A;  4HR3 A;  4Q1O A;  3NF4 A;  3L1T A;  1U8V A;  3BNJ A;  1SIR A;  2REH A;  2D29 A;  3PFD A;  1EGE A;  1FS8 A;  1GU6 A;  1BUC A;  3FO3 A;  3SWO A;  4RM7 A;  3OIB A;  3X0X A;  4G5E A;  1UKW A;  1WS9 A;  3D9G A;  3AFE A;  5K3I A;  2VIG A;  3B96 A;  2C0U A;  2ZAF A;  3AFF A;  4WJY A;  3MDE A;  2WBI A;  2EBA A;  2CX9 A;  3OWM A;  4Q17 A;  3SCE A;  3D9E A;  3X0Y A;  2VR0 A;  1IS2 A;  4IV6 A;  3UBR A;  5K3H A;  1OAH A;  1W07 A;  2IX5 A;  1SIQ A;  4L3Z A;  1JQI A;  3F29 A;  4Q5C A;  3EON A;  4X28 C;  5K3J A;  1EGD A;  1EGC A;  4N5F A;  3GQT A;  4O5M A;  2YYI A;  3TTB A;  2PG0 A;  2UXW A;  2YYJ A;  2IX6 A;  5K3G A;  4XVX A;  3D9F A;  3OWA A;  3S7W A;  3GNC A;  3D9D A;  2Z1Q A;  2ZO5 A;  2OR0 A;  3HWC A; 
#chains in the Genus database with same CATH topology
 2DVL A;  1S26 A;  3FCJ A;  3LG1 A;  3VKG A;  4KS9 A;  4X28 A;  1GKZ A;  4E00 A;  3Q0A A;  4W9U A;  1QDB A;  2JBS A;  1FS7 A;  1X90 A;  3TOR A;  1FS9 A;  2C12 A;  2BU5 A;  2OJQ A;  2JIF A;  3MXL A;  3MPJ A;  1UDY A;  3D9D A;  4AI6 A;  4HKR A;  4NXL A;  5M4P A;  3MDD A;  1XFV A;  4LQQ B;  3P4T A;  2Q8I A;  2RF7 A;  4MP7 A;  2CJ8 A;  1XFU A;  4DOY A;  2YYK A;  3TZ0 A;  2FP2 A;  2HJN A;  2EBF X;  2LFW A;  3MKH A;  1XFX A;  3MPI A;  4L1F A;  2YGW A;  3M9V A;  4L3X A;  4P13 A;  5GJW E;  2A1T A;  1IVH A;  2R03 A;  2XQR B;  2ZKJ A;  2AZE A;  2ZO5 A;  4IRN A;  3D2R A;  4V25 A;  2R0M A;  4L3Y A;  3SXQ A;  3EOM A;  2JBT A;  3BNH A;  2E81 A;  4FZ4 A;  2YYG A;  4KSF A;  4AKI A;  1Y8N A;  1R2J A;  3D1I A;  4H85 A;  4JEK A;  3BNF A;  2J7A A;  5B5V A;  1X91 A;  4FF3 A;  4E01 A;  2R05 A;  2YYM A;  2CJ4 A;  5BRK A;  2RDZ A;  3BNG A;  3CRK A;  3D6B A;  2BTZ A;  3KML A;  4HKS A;  4U83 A;  4J1V A;  4JIZ A;  1XFW A;  4ZXV A;  1SK6 A;  2R0N A;  3Q24 A;  3SF6 A;  4Q0T A;  2FP1 A;  3II9 A;  3TZ5 A;  3RKH A;  4ZYJ A;  3LGQ A;  1RP3 A;  4QIC A;  2Q8G A;  2PO4 A;  2YYL A;  3MMO A;  5BRM A;  2FON A;  2OEX A;  2VF1 A;  4M9A A;  1R3B A;  1K90 A;  2RFQ A;  2DDH A;  2OT4 A;  4KSA A;  3R7K A;  3VKH A;  4OO2 A;  5J71 A;  1RJ4 A;  3GM6 A;  1RX0 A;  4L38 A;  1T9G A;  4LQS B;  5M4M A;  1JM6 A;  3UU9 A;  1GKX A;  2E80 A;  2JBR A;  4KCF A;  3U33 A;  1RJ1 A;  4KTO A;  4HR3 A;  4Q4U A;  4Q1O A;  3NF4 A;  3L1T A;  1K93 A;  3X29 A;  4MPE A;  1GJV A;  2PNR A;  1U8V A;  1Y8P A;  3BNJ A;  2EBH X;  4P79 A;  1SIR A;  2REH A;  2D29 A;  3PFD A;  1EGE A;  1FS8 A;  2CJ5 A;  1GU6 A;  5GJV E;  4Q5B A;  3VAD A;  5B5W A;  1BUC A;  2GBB A;  2E0A A;  1SC5 A;  3FO3 A;  3SWO A;  4RM7 A;  3OIB A;  3X0X A;  2BU6 A;  4DZY A;  3Q23 A;  1PK0 A;  4G5E A;  1UKW A;  1WS9 A;  3D9G A;  1Y0V A;  3AFE A;  5K3I A;  4FF1 A;  2VIG A;  3B96 A;  4MPC A;  2C0U A;  1LVC A;  1X8Z A;  3AFF A;  4V26 A;  4WJY A;  4AKG A;  3MDE A;  2WBI A;  2EBA A;  2CX9 A;  2R02 A;  2XS1 A;  3OWM A;  4Q17 A;  2ZDX A;  3SCE A;  3D9E A;  3DJL A;  4FF2 A;  3X0Y A;  2BU7 A;  4MPN A;  4AKH A;  2VR0 A;  1IS2 A;  2BU2 A;  4IV6 A;  1K8T A;  3UBR A;  5M4N A;  5K3H A;  3C2P A;  1OAH A;  1W07 A;  2QR4 A;  5J6A A;  2IX5 A;  1SIQ A;  2CJ6 A;  1XG2 B;  4L3Z A;  2F6L A;  5B6B A;  1JQI A;  2BU8 A;  2EC5 A;  2XS8 A;  3F29 A;  3N0R A;  4Q5C A;  3TZ4 A;  4F0X A;  3EON A;  4X28 C;  1Y8O A;  5K3J A;  1EGD A;  1EGC A;  4MP2 A;  3GQT A;  4H7Q A;  4N5F A;  4FF4 A;  3TZ2 A;  4JIO A;  4O5M A;  1XFZ A;  2Q8H A;  4G97 A;  4E02 A;  2ZDY A;  5M4K A;  2YYI A;  3TTB A;  3C3L A;  2PG0 A;  2UXW A;  2YYJ A;  3CE2 A;  2IX6 A;  4H81 A;  5K3G A;  3C46 A;  2AO2 A;  4XVX A;  3Q22 A;  1XFY A;  2CJ7 A;  2Q8F A;  5EZ3 A;  3D9F A;  3OWA A;  3CRL A;  1PI1 A;  3S7W A;  3GNC A;  2OEV A;  2Z1Q A;  2ZAF A;  2OR0 A;  3HWC A; 
#chains in the Genus database with same CATH homology
 2DVL A;  3FCJ A;  3LG1 A;  4X28 A;  4W9U A;  1QDB A;  2JBS A;  1FS7 A;  3TOR A;  1FS9 A;  2C12 A;  3MXL A;  2JIF A;  3MPJ A;  1UDY A;  4NXL A;  3MDD A;  3P4T A;  2RF7 A;  4DOY A;  2YYK A;  3MKH A;  3MPI A;  4L3X A;  4P13 A;  4L1F A;  4Q5B A;  3M9V A;  2A1T A;  1IVH A;  4IRN A;  2R0M A;  4L3Y A;  3SXQ A;  3EOM A;  2JBT A;  3BNH A;  2E81 A;  2YYG A;  1R2J A;  3D1I A;  4JEK A;  3BNF A;  2J7A A;  2YYM A;  2RDZ A;  3BNG A;  3D6B A;  4U83 A;  4ZXV A;  2R0N A;  3SF6 A;  4Q0T A;  3II9 A;  4ZYJ A;  3RKH A;  3LGQ A;  2YYL A;  3MMO A;  2FON A;  4M9A A;  2RFQ A;  2DDH A;  2OT4 A;  3R7K A;  4OO2 A;  3GM6 A;  1RX0 A;  4L38 A;  1T9G A;  3UU9 A;  2E80 A;  2JBR A;  4KCF A;  4KTO A;  4Q4U A;  4HR3 A;  4Q1O A;  3NF4 A;  3L1T A;  1U8V A;  3BNJ A;  1SIR A;  2REH A;  2D29 A;  3PFD A;  1EGE A;  1FS8 A;  1GU6 A;  1BUC A;  3FO3 A;  3SWO A;  4RM7 A;  3OIB A;  3X0X A;  4G5E A;  1UKW A;  1WS9 A;  3D9G A;  3AFE A;  5K3I A;  2VIG A;  3B96 A;  2C0U A;  2ZAF A;  3AFF A;  4WJY A;  3MDE A;  2WBI A;  2EBA A;  2CX9 A;  3OWM A;  4Q17 A;  3SCE A;  3D9E A;  3X0Y A;  2VR0 A;  1IS2 A;  4IV6 A;  3UBR A;  5K3H A;  1OAH A;  1W07 A;  2IX5 A;  1SIQ A;  4L3Z A;  1JQI A;  3F29 A;  4Q5C A;  3EON A;  4X28 C;  5K3J A;  1EGD A;  1EGC A;  4N5F A;  3GQT A;  4O5M A;  2YYI A;  3TTB A;  2PG0 A;  2UXW A;  2YYJ A;  2IX6 A;  5K3G A;  4XVX A;  3D9F A;  3OWA A;  3S7W A;  3GNC A;  3D9D A;  2Z1Q A;  2ZO5 A;  2OR0 A;  3HWC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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