2YYWA

The f20m mutant of tetraheme cytochrome c3 from desulfovibrio vulgaris miyazaki f
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
107
structure length
107
Chain Sequence
APKAPADGLKMDKTKQPVVMNHSTHKAVKCGDCHHPVNGKEDYQKCATAGCHDNMDKKDKSAKGYYHAMHDKGTKFKSCVGCHLETAGADAAKKKELTGCKGSKCHS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords Cytochrome c3
publication title Structures of Noncoordinated Aromatic Residue Mutants in Tetraheme Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F
rcsb
source organism Desulfovibrio vulgaris str. 'miyazaki f'
total genus 23
structure length 107
sequence length 107
ec nomenclature
pdb deposition date 2007-05-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.10.10 Alpha Beta Alpha-Beta Complex Cytochrome C3 Cytochrome C3 2yywA00
1OFWA 3OUEA 1HH5A 1NEWA 3H34A 2KMYA 2BQ4A 2LZZA 2YXCA 3BXUA 1WR5A 1KWJA 3CARA 2A3MA 1UPDA 3OV0A 1UP9A 1J0PA 2BPNA 1DUWA 2YYXA 4HB6A 2FFNA 3H4NA 3CYRA 2CY3A 2EWIA 1A2IA 2Z47A 1WADA 3SJ4X 3OUQA 1QN0A 2MZ9A 3SJ1X 1GM4A 3SELX 1OS6A 1GYOA 4HDLA 1I77A 3H33A 3SJ0X 1F22A 4HBFA 2CVCA 2E84A 1J0OA 4HB8A 1AQEA 2KSUA 1MDVA 1OFYA 1EHJA 1IT1A 4HAJA 1LM2A 4HC3A 1QN1A 2CDVA 1H29A 2YYWA 1W7OA 1CZJA 2N91A 2CYMA 19HCA 2EWKA 2A3PA 1GMBA 1RWJA 1GWSA 2EWUA 1L3OA 2CTHA 1Z1NX 2LDOA 3CAOA
chains in the Genus database with same CATH superfamily
1OFWA 3OUEA 1HH5A 1NEWA 3H34A 2KMYA 2BQ4A 2LZZA 2YXCA 3BXUA 1WR5A 1KWJA 3CARA 2A3MA 1UPDA 3OV0A 1UP9A 1J0PA 2BPNA 1DUWA 2YYXA 4HB6A 2FFNA 3H4NA 3CYRA 2CY3A 2EWIA 1A2IA 2Z47A 1WADA 3SJ4X 3OUQA 1QN0A 2MZ9A 3SJ1X 1GM4A 3SELX 1OS6A 1GYOA 4HDLA 1I77A 3H33A 3SJ0X 1F22A 4HBFA 2CVCA 2E84A 1J0OA 4HB8A 1AQEA 2KSUA 1MDVA 1OFYA 1EHJA 1IT1A 4HAJA 1LM2A 4HC3A 1QN1A 2CDVA 1H29A 2YYWA 1W7OA 1CZJA 2N91A 2CYMA 19HCA 2EWKA 2A3PA 1GMBA 1RWJA 1GWSA 2EWUA 1L3OA 2CTHA 1Z1NX 2LDOA 3CAOA
chains in the Genus database with same CATH topology
1OFWA 3OUEA 1HH5A 1NEWA 3H34A 2KMYA 2BQ4A 2LZZA 2YXCA 3BXUA 1WR5A 1KWJA 3CARA 2A3MA 1UPDA 3OV0A 1UP9A 1J0PA 2BPNA 1DUWA 2YYXA 4HB6A 2FFNA 3H4NA 3CYRA 2CY3A 2EWIA 1A2IA 2Z47A 1WADA 3SJ4X 3OUQA 1QN0A 2MZ9A 3SJ1X 1GM4A 3SELX 1OS6A 1GYOA 4HDLA 1I77A 3H33A 3SJ0X 1F22A 4HBFA 2CVCA 2E84A 1J0OA 4HB8A 1AQEA 2KSUA 1MDVA 1OFYA 1EHJA 1IT1A 4HAJA 1LM2A 4HC3A 1QN1A 2CDVA 1H29A 2YYWA 1W7OA 1CZJA 2N91A 2CYMA 19HCA 2EWKA 2A3PA 1GMBA 1RWJA 1GWSA 2EWUA 1L3OA 2CTHA 1Z1NX 2LDOA 3CAOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OFW A;  3OUE A;  1HH5 A;  1NEW A;  3H34 A;  2KMY A;  2BQ4 A;  2LZZ A;  2YXC A;  3BXU A;  1WR5 A;  1KWJ A;  3CAR A;  2A3M A;  1UPD A;  3OV0 A;  1UP9 A;  1J0P A;  2BPN A;  1DUW A;  2YYX A;  4HB6 A;  2FFN A;  3H4N A;  3CYR A;  2CY3 A;  2EWI A;  1A2I A;  2Z47 A;  1WAD A;  3SJ4 X;  3OUQ A;  1QN0 A;  2MZ9 A;  3SJ1 X;  1GM4 A;  3SEL X;  1OS6 A;  1GYO A;  4HDL A;  1I77 A;  3H33 A;  3SJ0 X;  1F22 A;  4HBF A;  2CVC A;  2E84 A;  1J0O A;  4HB8 A;  1AQE A;  2KSU A;  1MDV A;  1OFY A;  1EHJ A;  1IT1 A;  4HAJ A;  1LM2 A;  4HC3 A;  1QN1 A;  2CDV A;  1H29 A;  2YYW A;  1W7O A;  1CZJ A;  2N91 A;  2CYM A;  19HC A;  2EWK A;  2A3P A;  1GMB A;  1RWJ A;  1GWS A;  2EWU A;  1L3O A;  2CTH A;  1Z1N X;  2LDO A;  3CAO A; 
#chains in the Genus database with same CATH topology
 1OFW A;  3OUE A;  1HH5 A;  1NEW A;  3H34 A;  2KMY A;  2BQ4 A;  2LZZ A;  2YXC A;  3BXU A;  1WR5 A;  1KWJ A;  3CAR A;  2A3M A;  1UPD A;  3OV0 A;  1UP9 A;  1J0P A;  2BPN A;  1DUW A;  2YYX A;  4HB6 A;  2FFN A;  3H4N A;  3CYR A;  2CY3 A;  2EWI A;  1A2I A;  2Z47 A;  1WAD A;  3SJ4 X;  3OUQ A;  1QN0 A;  2MZ9 A;  3SJ1 X;  1GM4 A;  3SEL X;  1OS6 A;  1GYO A;  4HDL A;  1I77 A;  3H33 A;  3SJ0 X;  1F22 A;  4HBF A;  2CVC A;  2E84 A;  1J0O A;  4HB8 A;  1AQE A;  2KSU A;  1MDV A;  1OFY A;  1EHJ A;  1IT1 A;  4HAJ A;  1LM2 A;  4HC3 A;  1QN1 A;  2CDV A;  1H29 A;  2YYW A;  1W7O A;  1CZJ A;  2N91 A;  2CYM A;  19HC A;  2EWK A;  2A3P A;  1GMB A;  1RWJ A;  1GWS A;  2EWU A;  1L3O A;  2CTH A;  1Z1N X;  2LDO A;  3CAO A; 
#chains in the Genus database with same CATH homology
 1OFW A;  3OUE A;  1HH5 A;  1NEW A;  3H34 A;  2KMY A;  2BQ4 A;  2LZZ A;  2YXC A;  3BXU A;  1WR5 A;  1KWJ A;  3CAR A;  2A3M A;  1UPD A;  3OV0 A;  1UP9 A;  1J0P A;  2BPN A;  1DUW A;  2YYX A;  4HB6 A;  2FFN A;  3H4N A;  3CYR A;  2CY3 A;  2EWI A;  1A2I A;  2Z47 A;  1WAD A;  3SJ4 X;  3OUQ A;  1QN0 A;  2MZ9 A;  3SJ1 X;  1GM4 A;  3SEL X;  1OS6 A;  1GYO A;  4HDL A;  1I77 A;  3H33 A;  3SJ0 X;  1F22 A;  4HBF A;  2CVC A;  2E84 A;  1J0O A;  4HB8 A;  1AQE A;  2KSU A;  1MDV A;  1OFY A;  1EHJ A;  1IT1 A;  4HAJ A;  1LM2 A;  4HC3 A;  1QN1 A;  2CDV A;  1H29 A;  2YYW A;  1W7O A;  1CZJ A;  2N91 A;  2CYM A;  19HC A;  2EWK A;  2A3P A;  1GMB A;  1RWJ A;  1GWS A;  2EWU A;  1L3O A;  2CTH A;  1Z1N X;  2LDO A;  3CAO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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