2Z0YA

Crystal structure of ttha0657-sam complex
Total Genus 59
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
Knots found
sequence length
224
structure length
224
Chain Sequence
b'RAFSPGLTGVLPLRETRHLVEVLRARVGDRFTVFDGEREALAEVVDLGPPLRYRVLEERRPEREVGVEVVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAVALEAAKQSGRVVVPEVLPPIPLKAVPQVAQGLVAHVGATARVREVLDPEKPLALAVGPEGGFAEEEVALLEARGFTPVSLGRRILRAETAALALLALCTAGEGR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Putative uncharacterized protein TTHA0657
publication title Crystal structure of TTHA0657-SAM complex
rcsb
source organism Thermus thermophilus
molecule tags Transferase
total genus 59
structure length 224
sequence length 224
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature
pdb deposition date 2007-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04452 Methyltrans_RNA RNA methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.20 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Hypothetical PUA domain-like; domain 1 2z0yA01
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 2z0yA02
4YQLA 4YQKA 1UAJA 4MCCA 2NWAA 1NXZA 3O7BA 4H3YA 4YPYA 4YQQA 1OY5A 5FAIA 3BBDA 4XBOA 2V3JA 4YQJA 1K3RA 2O3AA 1ZJRA 4YQTA 3KY7A 3KTYA 3QUVA 1X7PA 2Z0YA 4FAKA 4YQNA 5GM8A 1V2XA 3E5YA 4YQ2A 4JAKA 1UAKA 3AIAA 3NK6A 1J85A 4YQCA 3OIIA 3KNUA 4RG1A 4CNDA 2V3KA 5GMCA 3AXZA 4E8BA 3ONPA 3AI9X 3DCMX 4CNEA 2EGVA 4YQIA 1O6DA 4YVKA 3ILKA 4YQ6A 4YQ7A 2I6DA 2QMMA 2CX8A 3L8UA 4YQ0A 4H3ZA 1TO0A 1V6ZA 4KDZA 4YQ1A 3BBHA 4YQ5A 4YVHA 4JALA 4X3LA 2QWVA 1UALA 3N4KA 1P9PA 5CO4A 4MCDA 4YQBA 1VHKA 4YQSA 4YQPA 3GYQA 4YQ9A 1NS5A 4YPZA 4CNGA 4J3CA 4IG6A 4L69A 4KGNA 1X7OA 4YVJA 3OIJA 3BBEA 1VHYA 4YQDA 5D9FA 4CNFA 4YQ8A 4YVIA 1UAMA 1Z85A 4YPWA 4MCBA 3IC6A 4YQAA 1IPAA 3NK7A 4YQOA 4YPXA 5GMBA 2HA8A 1VH0A 4YQRA 3N4JA 3KW2A 4YQGA 4YVGA 4YQ3A 4PZKA 1MXIA 4YQ4A 4X3MA 2YY8A 3OINA 1GZ0A 3IEFA 2EGWA
chains in the Genus database with same CATH superfamily
4YQLA 4YQKA 1UAJA 1O0BA 3CZBA 4MCCA 4JWGA 2NWAA 3J7ZV 1NXZA 3O7BA 4H3YA 4YPYA 2RE8A 4YQQA 1QRUA 1OY5A 5FAIA 4IOCS 3BBDA 1GTRA 4XBOA 1UDXA 1QTQA 4P2BA 1K3RA 1DFUP 1ZJRA 2O3AA 2GAEA 2V3JA 4YQJA 4YQTA 3KY7A 3KTYA 3QUVA 1X7PA 4WFNS 2Z0YA 4FAKA 2G6GA 4WFAS 4YQNA 4H3SA 5GM8A 2G5DA 4IO9S 1V2XA 1QRTA 3E5YA 4YQ2A 3CF5S 4JAKA 1UAKA 3AIAA 3NK6A 1J85A 4YQCA 2PI8A 3OIIA 3W2WB 3KNUA 3X1LB 4RG1A 4CNDA 2V3KA 5GMCA 3AXZA 4E8BA 3ONPA 3AI9X 3DCMX 4JWFA 4CNEA 2EGVA 4YQIA 1O6DA 4YVKA 5JVHS 3ILKA 4YQ6A 4YQ7A 1QRSA 4V194 2I6DA 2CX8A 2QMMA 3L8UA 4H4KA 3W2VB 4YQ0A 5JVGS 4FMWA 4H3ZA 1GTSA 1TO0A 1V6ZA 4KDZA 4YQ1A 3BBHA 4YQ5A 4YVHA 4JALA 4X3LA 4JWHA 2QWVA 1B75A 4IOAS 1UALA 1P9PA 3N4KA 5CO4A 1EUQA 4U67S 5DM7S 4WFBS 2HZ7A 4MCDA 4YQBA 1VHKA 4YQSA 4YQPA 3GYQA 4YQ9A 2AE0X 1NS5A 4YPZA 4CNGA 4J3CA 2ZJQS 2RD2A 1O0CA 4WCES 4IG6A 4L69A 4KGNA 1X7OA 4YVJA 5HL7S 3PIPS 3OIJA 3BBEA 1EXDA 1VHYA 1EUYA 4YQDA 2ZJRS 2ZJPS 2PNWA 4JWJA 5GAHW 5D9FA 3AIIA 4CNFA 4YQ8A 4YVIA 5BNZA 1UAMA 1Z85A 5DM6S 2PICA 4YPWA 1ZJWA 4MCBA 3IC6A 4YQAA 1IPAA 2PJJA 3NK7A 4YQOA 5GAGW 5GAEW 4WF9S 4YPXA 5GMBA 2HA8A 4UY88 5GADW 1VH0A 4YQRA 3N4JA 4JXZA 3KW2A 4YQGA 4YVGA 4YQ3A 1FEUA 4PZKA 1MXIA 3PIOS 4YQ4A 3DLLS 4X3MA 4JYZA 5IZNA 2YY8A 3OINA 1D6KA 1GZ0A 4JXXA 1NYLA 3IEFA 2EGWA
chains in the Genus database with same CATH topology
4YQLA 4YQKA 1UAJA 4MCCA 4JWGA 2NWAA 1NXZA 3O7BA 4H3YA 4YPYA 4YQQA 1OY5A 5FAIA 3BBDA 4XBOA 2V3JA 4YQJA 1K3RA 2O3AA 1ZJRA 4YQTA 3KY7A 3KTYA 3QUVA 1X7PA 2Z0YA 4FAKA 4YQNA 5GM8A 1V2XA 3E5YA 4YQ2A 4JAKA 1UAKA 3AIAA 3NK6A 1J85A 4YQCA 3OIIA 3KNUA 4RG1A 4CNDA 2V3KA 5GMCA 3AXZA 4E8BA 3ONPA 3AI9X 3DCMX 4JWFA 4CNEA 2EGVA 4YQIA 1O6DA 4YVKA 3ILKA 4YQ6A 4YQ7A 2I6DA 2QMMA 2CX8A 3L8UA 4YQ0A 4FMWA 4H3ZA 1TO0A 1V6ZA 4KDZA 4YQ1A 3BBHA 4YQ5A 4YVHA 4JALA 4X3LA 2QWVA 1UALA 3N4KA 1P9PA 5CO4A 4MCDA 4YQBA 1VHKA 4YQSA 4YQPA 3GYQA 4YQ9A 1NS5A 4YPZA 4CNGA 4J3CA 4IG6A 4L69A 4KGNA 1X7OA 4YVJA 3OIJA 3BBEA 1VHYA 4YQDA 4JWJA 5D9FA 4CNFA 4YQ8A 4YVIA 1UAMA 1Z85A 4YPWA 4MCBA 3IC6A 4YQAA 1IPAA 3NK7A 4YQOA 4YPXA 5GMBA 2HA8A 1VH0A 4YQRA 2EGWA 3N4JA 3KW2A 4YQGA 4YVGA 4YQ3A 4PZKA 1MXIA 4YQ4A 4X3MA 2YY8A 3OINA 1GZ0A 3IEFA 4JWHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YQL A;  4YQK A;  1UAJ A;  4MCC A;  2NWA A;  1NXZ A;  3O7B A;  4H3Y A;  4YPY A;  4YQQ A;  1OY5 A;  5FAI A;  3BBD A;  4XBO A;  2V3J A;  4YQJ A;  1K3R A;  2O3A A;  1ZJR A;  4YQT A;  3KY7 A;  3KTY A;  3QUV A;  1X7P A;  2Z0Y A;  4FAK A;  4YQN A;  5GM8 A;  1V2X A;  3E5Y A;  4YQ2 A;  4JAK A;  1UAK A;  3AIA A;  3NK6 A;  1J85 A;  4YQC A;  3OII A;  3KNU A;  4RG1 A;  4CND A;  2V3K A;  5GMC A;  3AXZ A;  4E8B A;  3ONP A;  3AI9 X;  3DCM X;  4CNE A;  2EGV A;  4YQI A;  1O6D A;  4YVK A;  3ILK A;  4YQ6 A;  4YQ7 A;  2I6D A;  2QMM A;  2CX8 A;  3L8U A;  4YQ0 A;  4H3Z A;  1TO0 A;  1V6Z A;  4KDZ A;  4YQ1 A;  3BBH A;  4YQ5 A;  4YVH A;  4JAL A;  4X3L A;  2QWV A;  1UAL A;  3N4K A;  1P9P A;  5CO4 A;  4MCD A;  4YQB A;  1VHK A;  4YQS A;  4YQP A;  3GYQ A;  4YQ9 A;  1NS5 A;  4YPZ A;  4CNG A;  4J3C A;  4IG6 A;  4L69 A;  4KGN A;  1X7O A;  4YVJ A;  3OIJ A;  3BBE A;  1VHY A;  4YQD A;  5D9F A;  4CNF A;  4YQ8 A;  4YVI A;  1UAM A;  1Z85 A;  4YPW A;  4MCB A;  3IC6 A;  4YQA A;  1IPA A;  3NK7 A;  4YQO A;  4YPX A;  5GMB A;  2HA8 A;  1VH0 A;  4YQR A;  3N4J A;  3KW2 A;  4YQG A;  4YVG A;  4YQ3 A;  4PZK A;  1MXI A;  4YQ4 A;  4X3M A;  2YY8 A;  3OIN A;  1GZ0 A;  3IEF A;  2EGW A; 
#chains in the Genus database with same CATH topology
 4YQL A;  4YQK A;  1UAJ A;  1O0B A;  3CZB A;  4MCC A;  4JWG A;  2NWA A;  3J7Z V;  1NXZ A;  3O7B A;  4H3Y A;  4YPY A;  2RE8 A;  4YQQ A;  1QRU A;  1OY5 A;  5FAI A;  4IOC S;  3BBD A;  1GTR A;  4XBO A;  1UDX A;  1QTQ A;  4P2B A;  1K3R A;  1DFU P;  1ZJR A;  2O3A A;  2GAE A;  2V3J A;  4YQJ A;  4YQT A;  3KY7 A;  3KTY A;  3QUV A;  1X7P A;  4WFN S;  2Z0Y A;  4FAK A;  2G6G A;  4WFA S;  4YQN A;  4H3S A;  5GM8 A;  2G5D A;  4IO9 S;  1V2X A;  1QRT A;  3E5Y A;  4YQ2 A;  3CF5 S;  4JAK A;  1UAK A;  3AIA A;  3NK6 A;  1J85 A;  4YQC A;  2PI8 A;  3OII A;  3W2W B;  3KNU A;  3X1L B;  4RG1 A;  4CND A;  2V3K A;  5GMC A;  3AXZ A;  4E8B A;  3ONP A;  3AI9 X;  3DCM X;  4JWF A;  4CNE A;  2EGV A;  4YQI A;  1O6D A;  4YVK A;  5JVH S;  3ILK A;  4YQ6 A;  4YQ7 A;  1QRS A;  4V19 4;  2I6D A;  2CX8 A;  2QMM A;  3L8U A;  4H4K A;  3W2V B;  4YQ0 A;  5JVG S;  4FMW A;  4H3Z A;  1GTS A;  1TO0 A;  1V6Z A;  4KDZ A;  4YQ1 A;  3BBH A;  4YQ5 A;  4YVH A;  4JAL A;  4X3L A;  4JWH A;  2QWV A;  1B75 A;  4IOA S;  1UAL A;  1P9P A;  3N4K A;  5CO4 A;  1EUQ A;  4U67 S;  5DM7 S;  4WFB S;  2HZ7 A;  4MCD A;  4YQB A;  1VHK A;  4YQS A;  4YQP A;  3GYQ A;  4YQ9 A;  2AE0 X;  1NS5 A;  4YPZ A;  4CNG A;  4J3C A;  2ZJQ S;  2RD2 A;  1O0C A;  4WCE S;  4IG6 A;  4L69 A;  4KGN A;  1X7O A;  4YVJ A;  5HL7 S;  3PIP S;  3OIJ A;  3BBE A;  1EXD A;  1VHY A;  1EUY A;  4YQD A;  2ZJR S;  2ZJP S;  2PNW A;  4JWJ A;  5GAH W;  5D9F A;  3AII A;  4CNF A;  4YQ8 A;  4YVI A;  5BNZ A;  1UAM A;  1Z85 A;  5DM6 S;  2PIC A;  4YPW A;  1ZJW A;  4MCB A;  3IC6 A;  4YQA A;  1IPA A;  2PJJ A;  3NK7 A;  4YQO A;  5GAG W;  5GAE W;  4WF9 S;  4YPX A;  5GMB A;  2HA8 A;  4UY8 8;  5GAD W;  1VH0 A;  4YQR A;  3N4J A;  4JXZ A;  3KW2 A;  4YQG A;  4YVG A;  4YQ3 A;  1FEU A;  4PZK A;  1MXI A;  3PIO S;  4YQ4 A;  3DLL S;  4X3M A;  4JYZ A;  5IZN A;  2YY8 A;  3OIN A;  1D6K A;  1GZ0 A;  4JXX A;  1NYL A;  3IEF A;  2EGW A; 
#chains in the Genus database with same CATH homology
 4YQL A;  4YQK A;  1UAJ A;  4MCC A;  4JWG A;  2NWA A;  1NXZ A;  3O7B A;  4H3Y A;  4YPY A;  4YQQ A;  1OY5 A;  5FAI A;  3BBD A;  4XBO A;  2V3J A;  4YQJ A;  1K3R A;  2O3A A;  1ZJR A;  4YQT A;  3KY7 A;  3KTY A;  3QUV A;  1X7P A;  2Z0Y A;  4FAK A;  4YQN A;  5GM8 A;  1V2X A;  3E5Y A;  4YQ2 A;  4JAK A;  1UAK A;  3AIA A;  3NK6 A;  1J85 A;  4YQC A;  3OII A;  3KNU A;  4RG1 A;  4CND A;  2V3K A;  5GMC A;  3AXZ A;  4E8B A;  3ONP A;  3AI9 X;  3DCM X;  4JWF A;  4CNE A;  2EGV A;  4YQI A;  1O6D A;  4YVK A;  3ILK A;  4YQ6 A;  4YQ7 A;  2I6D A;  2QMM A;  2CX8 A;  3L8U A;  4YQ0 A;  4FMW A;  4H3Z A;  1TO0 A;  1V6Z A;  4KDZ A;  4YQ1 A;  3BBH A;  4YQ5 A;  4YVH A;  4JAL A;  4X3L A;  2QWV A;  1UAL A;  3N4K A;  1P9P A;  5CO4 A;  4MCD A;  4YQB A;  1VHK A;  4YQS A;  4YQP A;  3GYQ A;  4YQ9 A;  1NS5 A;  4YPZ A;  4CNG A;  4J3C A;  4IG6 A;  4L69 A;  4KGN A;  1X7O A;  4YVJ A;  3OIJ A;  3BBE A;  1VHY A;  4YQD A;  4JWJ A;  5D9F A;  4CNF A;  4YQ8 A;  4YVI A;  1UAM A;  1Z85 A;  4YPW A;  4MCB A;  3IC6 A;  4YQA A;  1IPA A;  3NK7 A;  4YQO A;  4YPX A;  5GMB A;  2HA8 A;  1VH0 A;  4YQR A;  2EGW A;  3N4J A;  3KW2 A;  4YQG A;  4YVG A;  4YQ3 A;  4PZK A;  1MXI A;  4YQ4 A;  4X3M A;  2YY8 A;  3OIN A;  1GZ0 A;  3IEF A;  4JWH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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