2Z0YA

Crystal structure of ttha0657-sam complex
Total Genus 59
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
Knots found
sequence length
224
structure length
224
Chain Sequence
RAFSPGLTGVLPLRETRHLVEVLRARVGDRFTVFDGEREALAEVVDLGPPLRYRVLEERRPEREVGVEVVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAVALEAAKQSGRVVVPEVLPPIPLKAVPQVAQGLVAHVGATARVREVLDPEKPLALAVGPEGGFAEEEVALLEARGFTPVSLGRRILRAETAALALLALCTAGEGR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Crystal structure of TTHA0657-SAM complex
rcsb
molecule keywords Putative uncharacterized protein TTHA0657
molecule tags Transferase
source organism Thermus thermophilus
total genus 59
structure length 224
sequence length 224
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature
pdb deposition date 2007-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04452 Methyltrans_RNA RNA methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.20 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Hypothetical PUA domain-like; domain 1 2z0yA01
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 2z0yA02
3N4KA 4CNEA 4X3LA 1IPAA 5CO4A 3NK6A 1P9PA 4CNDA 4YPZA 5D9FA 4KGNA 3E5YA 3KW2A 2NWAA 3KTYA 4YQJA 1V6ZA 3KY7A 4FAKA 2CX8A 4H3YA 4MCBA 4YQOA 5GMCA 1Z85A 1X7PA 4YQIA 1ZJRA 1NS5A 2QMMA 4YQ0A 3IC6A 4YQPA 1TO0A 2I6DA 4YQ7A 4YQDA 4YQKA 4YQQA 3N4JA 4CNGA 4X3MA 1UAMA 4YVGA 3NK7A 3BBHA 1J85A 4YQ3A 1UALA 1UAKA 3QUVA 3AIAA 1V2XA 4CNFA 1VH0A 3BBDA 4MCDA 4H3ZA 5FAIA 4KDZA 3AXZA 4JALA 2YY8A 3IEFA 4YQNA 5GM8A 3OIJA 4J3CA 3O7BA 4PZKA 4YQ8A 4L69A 4YPWA 4YQGA 4YQLA 3ILKA 4YVIA 4JAKA 4E8BA 4YVJA 3ONPA 4IG6A 1O6DA 2V3JA 4YQ9A 4YQ1A 2O3AA 1VHKA 4YQ2A 1NXZA 2EGWA 2HA8A 4YQAA 2EGVA 3BBEA 3DCMX 5GMBA 4YQSA 3OIIA 4YQRA 4YQ6A 4RG1A 1X7OA 4YQ5A 4YPXA 4YQBA 4YQ4A 1UAJA 2QWVA 3L8UA 1VHYA 1GZ0A 3AI9X 3KNUA 3OINA 1K3RA 1OY5A 2V3KA 3GYQA 4YPYA 4YVHA 2Z0YA 4MCCA 4XBOA 4YVKA 1MXIA 4YQTA 4YQCA
chains in the Genus database with same CATH superfamily
5IZNA 2RE8A 3N4KA 4CNEA 4JXXA 4X3LA 4IO9S 3PIOS 5GAEW 1IPAA 5CO4A 3NK6A 1P9PA 4CNDA 4YPZA 1QRSA 4JYZA 2RD2A 3CZBA 4WFAS 5D9FA 3E5YA 4KGNA 3KW2A 2NWAA 1EUYA 2PJJA 3KTYA 1ZJWA 4YQJA 5JVGS 1V6ZA 3KY7A 4FAKA 2CX8A 4H3YA 4MCBA 1O0CA 4YQOA 5GMCA 1Z85A 1NYLA 1X7PA 4YQIA 1ZJRA 1NS5A 2QMMA 4YQ0A 2PI8A 3IC6A 4YQPA 1TO0A 2I6DA 4YQ7A 4YQDA 4YQKA 4YQQA 3N4JA 4P2BA 4CNGA 4X3MA 1UAMA 3X1LB 3W2WB 4YVGA 3NK7A 3BBHA 5BNZA 1J85A 4UY88 4YQ3A 1UALA 1QRTA 1UAKA 2HZ7A 3QUVA 5JVHS 1EXDA 1V2XA 3AIAA 4CNFA 1VH0A 5DM7S 1QRUA 4JWJA 3BBDA 4MCDA 4H4KA 4H3ZA 4JWFA 5FAIA 4KDZA 5DM6S 3AXZA 2PICA 5HL7S 4JALA 4WFBS 2YY8A 3IEFA 3J7ZV 4YQNA 5GM8A 4FMWA 3OIJA 4J3CA 4H3SA 3O7BA 4PZKA 1O0BA 1DFUP 4YQ8A 4L69A 3PIPS 4YPWA 4YQGA 4YQLA 4JWHA 3ILKA 4JXZA 4YVIA 3W2VB 1B75A 4WF9S 4JAKA 4E8BA 4YVJA 2AE0X 3ONPA 4IG6A 1D6KA 1O6DA 2GAEA 2V3JA 4YQ9A 4YQ1A 4U67S 2O3AA 1VHKA 4YQ2A 1NXZA 2EGWA 3DLLS 2HA8A 4YQAA 2EGVA 1QTQA 5GAGW 2ZJRS 3BBEA 4JWGA 3DCMX 5GMBA 4IOCS 4YQSA 2G6GA 3OIIA 4YQRA 4YQ6A 4RG1A 5GADW 1X7OA 4YQ5A 4YPXA 4YQBA 4YQ4A 1UAJA 2QWVA 3L8UA 4V194 1FEUA 1VHYA 1GZ0A 3AI9X 4IOAS 3KNUA 3OINA 4YQTA 1K3RA 3CF5S 1OY5A 2V3KA 3GYQA 4YPYA 1UDXA 4WFNS 5GAHW 4YVHA 2Z0YA 4MCCA 2PNWA 2ZJQS 4WCES 2ZJPS 3AIIA 4XBOA 1GTSA 4YVKA 1MXIA 1EUQA 2G5DA 4YQCA 1GTRA
chains in the Genus database with same CATH topology
3N4KA 4CNEA 4X3LA 1IPAA 5CO4A 3NK6A 1P9PA 4CNDA 4YPZA 5D9FA 4KGNA 3E5YA 3KW2A 2NWAA 3KTYA 4YQJA 1V6ZA 3KY7A 4FAKA 2CX8A 4H3YA 4MCBA 4YQOA 5GMCA 1Z85A 1X7PA 4YQIA 1ZJRA 1NS5A 2QMMA 4YQ0A 3IC6A 4YQPA 1TO0A 2I6DA 4YQ7A 4YQDA 4YQKA 4YQQA 3N4JA 4CNGA 4X3MA 1UAMA 4YVGA 3NK7A 3BBHA 1J85A 4YQ3A 1UALA 1UAKA 3QUVA 3AIAA 1V2XA 4CNFA 1VH0A 4JWJA 3BBDA 4MCDA 4H3ZA 4JWFA 5FAIA 4KDZA 3AXZA 4JALA 2YY8A 3IEFA 4YQNA 5GM8A 4FMWA 3OIJA 4J3CA 3O7BA 4PZKA 4YQ8A 4L69A 4YPWA 4YQGA 4YQLA 4JWHA 3ILKA 4YVIA 4JAKA 4E8BA 4YVJA 3ONPA 4IG6A 1O6DA 2V3JA 4YQ9A 4YQ1A 2O3AA 1VHKA 4YQ2A 1NXZA 2EGWA 2HA8A 4YQAA 2EGVA 3BBEA 4JWGA 3DCMX 5GMBA 4YQSA 3OIIA 4YQRA 4YQ6A 4RG1A 1X7OA 4YQ5A 4YPXA 4YQBA 4YQ4A 1UAJA 2QWVA 3L8UA 1VHYA 1GZ0A 3AI9X 3KNUA 3OINA 1K3RA 1OY5A 2V3KA 3GYQA 4YPYA 4YVHA 2Z0YA 4MCCA 4XBOA 4YVKA 1MXIA 4YQTA 4YQCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3N4K A;  4CNE A;  4X3L A;  1IPA A;  5CO4 A;  3NK6 A;  1P9P A;  4CND A;  4YPZ A;  5D9F A;  4KGN A;  3E5Y A;  3KW2 A;  2NWA A;  3KTY A;  4YQJ A;  1V6Z A;  3KY7 A;  4FAK A;  2CX8 A;  4H3Y A;  4MCB A;  4YQO A;  5GMC A;  1Z85 A;  1X7P A;  4YQI A;  1ZJR A;  1NS5 A;  2QMM A;  4YQ0 A;  3IC6 A;  4YQP A;  1TO0 A;  2I6D A;  4YQ7 A;  4YQD A;  4YQK A;  4YQQ A;  3N4J A;  4CNG A;  4X3M A;  1UAM A;  4YVG A;  3NK7 A;  3BBH A;  1J85 A;  4YQ3 A;  1UAL A;  1UAK A;  3QUV A;  3AIA A;  1V2X A;  4CNF A;  1VH0 A;  3BBD A;  4MCD A;  4H3Z A;  5FAI A;  4KDZ A;  3AXZ A;  4JAL A;  2YY8 A;  3IEF A;  4YQN A;  5GM8 A;  3OIJ A;  4J3C A;  3O7B A;  4PZK A;  4YQ8 A;  4L69 A;  4YPW A;  4YQG A;  4YQL A;  3ILK A;  4YVI A;  4JAK A;  4E8B A;  4YVJ A;  3ONP A;  4IG6 A;  1O6D A;  2V3J A;  4YQ9 A;  4YQ1 A;  2O3A A;  1VHK A;  4YQ2 A;  1NXZ A;  2EGW A;  2HA8 A;  4YQA A;  2EGV A;  3BBE A;  3DCM X;  5GMB A;  4YQS A;  3OII A;  4YQR A;  4YQ6 A;  4RG1 A;  1X7O A;  4YQ5 A;  4YPX A;  4YQB A;  4YQ4 A;  1UAJ A;  2QWV A;  3L8U A;  1VHY A;  1GZ0 A;  3AI9 X;  3KNU A;  3OIN A;  1K3R A;  1OY5 A;  2V3K A;  3GYQ A;  4YPY A;  4YVH A;  2Z0Y A;  4MCC A;  4XBO A;  4YVK A;  1MXI A;  4YQT A;  4YQC A; 
#chains in the Genus database with same CATH topology
 5IZN A;  2RE8 A;  3N4K A;  4CNE A;  4JXX A;  4X3L A;  4IO9 S;  3PIO S;  5GAE W;  1IPA A;  5CO4 A;  3NK6 A;  1P9P A;  4CND A;  4YPZ A;  1QRS A;  4JYZ A;  2RD2 A;  3CZB A;  4WFA S;  5D9F A;  3E5Y A;  4KGN A;  3KW2 A;  2NWA A;  1EUY A;  2PJJ A;  3KTY A;  1ZJW A;  4YQJ A;  5JVG S;  1V6Z A;  3KY7 A;  4FAK A;  2CX8 A;  4H3Y A;  4MCB A;  1O0C A;  4YQO A;  5GMC A;  1Z85 A;  1NYL A;  1X7P A;  4YQI A;  1ZJR A;  1NS5 A;  2QMM A;  4YQ0 A;  2PI8 A;  3IC6 A;  4YQP A;  1TO0 A;  2I6D A;  4YQ7 A;  4YQD A;  4YQK A;  4YQQ A;  3N4J A;  4P2B A;  4CNG A;  4X3M A;  1UAM A;  3X1L B;  3W2W B;  4YVG A;  3NK7 A;  3BBH A;  5BNZ A;  1J85 A;  4UY8 8;  4YQ3 A;  1UAL A;  1QRT A;  1UAK A;  2HZ7 A;  3QUV A;  5JVH S;  1EXD A;  1V2X A;  3AIA A;  4CNF A;  1VH0 A;  5DM7 S;  1QRU A;  4JWJ A;  3BBD A;  4MCD A;  4H4K A;  4H3Z A;  4JWF A;  5FAI A;  4KDZ A;  5DM6 S;  3AXZ A;  2PIC A;  5HL7 S;  4JAL A;  4WFB S;  2YY8 A;  3IEF A;  3J7Z V;  4YQN A;  5GM8 A;  4FMW A;  3OIJ A;  4J3C A;  4H3S A;  3O7B A;  4PZK A;  1O0B A;  1DFU P;  4YQ8 A;  4L69 A;  3PIP S;  4YPW A;  4YQG A;  4YQL A;  4JWH A;  3ILK A;  4JXZ A;  4YVI A;  3W2V B;  1B75 A;  4WF9 S;  4JAK A;  4E8B A;  4YVJ A;  2AE0 X;  3ONP A;  4IG6 A;  1D6K A;  1O6D A;  2GAE A;  2V3J A;  4YQ9 A;  4YQ1 A;  4U67 S;  2O3A A;  1VHK A;  4YQ2 A;  1NXZ A;  2EGW A;  3DLL S;  2HA8 A;  4YQA A;  2EGV A;  1QTQ A;  5GAG W;  2ZJR S;  3BBE A;  4JWG A;  3DCM X;  5GMB A;  4IOC S;  4YQS A;  2G6G A;  3OII A;  4YQR A;  4YQ6 A;  4RG1 A;  5GAD W;  1X7O A;  4YQ5 A;  4YPX A;  4YQB A;  4YQ4 A;  1UAJ A;  2QWV A;  3L8U A;  4V19 4;  1FEU A;  1VHY A;  1GZ0 A;  3AI9 X;  4IOA S;  3KNU A;  3OIN A;  4YQT A;  1K3R A;  3CF5 S;  1OY5 A;  2V3K A;  3GYQ A;  4YPY A;  1UDX A;  4WFN S;  5GAH W;  4YVH A;  2Z0Y A;  4MCC A;  2PNW A;  2ZJQ S;  4WCE S;  2ZJP S;  3AII A;  4XBO A;  1GTS A;  4YVK A;  1MXI A;  1EUQ A;  2G5D A;  4YQC A;  1GTR A; 
#chains in the Genus database with same CATH homology
 3N4K A;  4CNE A;  4X3L A;  1IPA A;  5CO4 A;  3NK6 A;  1P9P A;  4CND A;  4YPZ A;  5D9F A;  4KGN A;  3E5Y A;  3KW2 A;  2NWA A;  3KTY A;  4YQJ A;  1V6Z A;  3KY7 A;  4FAK A;  2CX8 A;  4H3Y A;  4MCB A;  4YQO A;  5GMC A;  1Z85 A;  1X7P A;  4YQI A;  1ZJR A;  1NS5 A;  2QMM A;  4YQ0 A;  3IC6 A;  4YQP A;  1TO0 A;  2I6D A;  4YQ7 A;  4YQD A;  4YQK A;  4YQQ A;  3N4J A;  4CNG A;  4X3M A;  1UAM A;  4YVG A;  3NK7 A;  3BBH A;  1J85 A;  4YQ3 A;  1UAL A;  1UAK A;  3QUV A;  3AIA A;  1V2X A;  4CNF A;  1VH0 A;  4JWJ A;  3BBD A;  4MCD A;  4H3Z A;  4JWF A;  5FAI A;  4KDZ A;  3AXZ A;  4JAL A;  2YY8 A;  3IEF A;  4YQN A;  5GM8 A;  4FMW A;  3OIJ A;  4J3C A;  3O7B A;  4PZK A;  4YQ8 A;  4L69 A;  4YPW A;  4YQG A;  4YQL A;  4JWH A;  3ILK A;  4YVI A;  4JAK A;  4E8B A;  4YVJ A;  3ONP A;  4IG6 A;  1O6D A;  2V3J A;  4YQ9 A;  4YQ1 A;  2O3A A;  1VHK A;  4YQ2 A;  1NXZ A;  2EGW A;  2HA8 A;  4YQA A;  2EGV A;  3BBE A;  4JWG A;  3DCM X;  5GMB A;  4YQS A;  3OII A;  4YQR A;  4YQ6 A;  4RG1 A;  1X7O A;  4YQ5 A;  4YPX A;  4YQB A;  4YQ4 A;  1UAJ A;  2QWV A;  3L8U A;  1VHY A;  1GZ0 A;  3AI9 X;  3KNU A;  3OIN A;  1K3R A;  1OY5 A;  2V3K A;  3GYQ A;  4YPY A;  4YVH A;  2Z0Y A;  4MCC A;  4XBO A;  4YVK A;  1MXI A;  4YQT A;  4YQC A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...