2Z0YA

Crystal structure of ttha0657-sam complex
Total Genus 59
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
Knots found
sequence length
224
structure length
224
Chain Sequence
RAFSPGLTGVLPLRETRHLVEVLRARVGDRFTVFDGEREALAEVVDLGPPLRYRVLEERRPEREVGVEVVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAVALEAAKQSGRVVVPEVLPPIPLKAVPQVAQGLVAHVGATARVREVLDPEKPLALAVGPEGGFAEEEVALLEARGFTPVSLGRRILRAETAALALLALCTAGEGR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Putative uncharacterized protein TTHA0657
publication title Crystal structure of TTHA0657-SAM complex
rcsb
source organism Thermus thermophilus
molecule tags Transferase
total genus 59
structure length 224
sequence length 224
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature
pdb deposition date 2007-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04452 Methyltrans_RNA RNA methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.20 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Hypothetical PUA domain-like; domain 1 2z0yA01
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 2z0yA02
1NXZA 4JAKA 2CX8A 2V3KA 3OINA 4FAKA 4MCDA 2QWVA 1VHKA 4YQOA 3AIAA 4X3MA 3O7BA 3IC6A 4IG6A 4MCBA 4YQQA 3AXZA 4YVHA 4JALA 3E5YA 3DCMX 4YQ3A 4YQSA 3L8UA 1X7PA 3KW2A 4YVGA 4YQLA 5D9FA 4YQAA 2V3JA 4YQNA 4YQ8A 1TO0A 3GYQA 1GZ0A 3N4KA 2EGVA 2EGWA 2YY8A 4MCCA 4E8BA 1UAJA 3BBEA 3NK7A 4YPWA 4YQRA 4KGNA 3N4JA 4YQPA 1VH0A 4YQ4A 3QUVA 2NWAA 1UAMA 4RG1A 5GMBA 4H3ZA 3ONPA 4L69A 3KTYA 4J3CA 3KY7A 1V6ZA 4YQCA 2HA8A 4YVJA 3OIIA 4CNFA 4YVIA 1X7OA 4YQ9A 1UAKA 4CNEA 1OY5A 4YQDA 5CO4A 4YPZA 3IEFA 4YQ2A 4YQIA 4X3LA 4CNGA 4CNDA 5GM8A 4YQ6A 4YQTA 4XBOA 2O3AA 3ILKA 3BBDA 1VHYA 4YQGA 1IPAA 2Z0YA 3AI9X 5FAIA 4YQ0A 4YPYA 1J85A 1O6DA 2QMMA 3BBHA 1Z85A 1K3RA 3OIJA 1UALA 1MXIA 2I6DA 1ZJRA 1P9PA 4PZKA 4YPXA 4YQ7A 3NK6A 4YVKA 1V2XA 4H3YA 3KNUA 4KDZA 4YQJA 4YQKA 5GMCA 4YQBA 1NS5A 4YQ5A 4YQ1A
chains in the Genus database with same CATH superfamily
1NXZA 1EUQA 4JAKA 2CX8A 4UY88 2G6GA 2V3KA 3OINA 4H3SA 4FAKA 4IO9S 1O0BA 4MCDA 2QWVA 1UDXA 5JVHS 5DM6S 1NYLA 1VHKA 4YQOA 4CNDA 1QTQA 2AE0X 3AIAA 4X3MA 1QRSA 3O7BA 3IC6A 4IG6A 2RD2A 2GAEA 4MCBA 4YQQA 3AXZA 4YVHA 4JALA 3E5YA 2RE8A 3DCMX 4YQ3A 5GAHW 4YQSA 3L8UA 4WF9S 1X7PA 3AIIA 4IOCS 3KW2A 1D6KA 2G5DA 1ZJWA 4YVGA 5D9FA 2V3JA 4YQLA 4YQAA 4YQ8A 1TO0A 4YQNA 4WFAS 3GYQA 1GZ0A 3N4KA 2EGVA 2PICA 2EGWA 2YY8A 4JWFA 3DLLS 2PI8A 4MCCA 4E8BA 1UAJA 3BBEA 4JXZA 4U67S 3NK7A 5GAEW 1QRUA 4YPWA 4YQRA 4KGNA 3N4JA 4YQPA 1VH0A 4YQ4A 3QUVA 2NWAA 1EUYA 4FMWA 1UAMA 4RG1A 5GMBA 1B75A 4H3ZA 3ONPA 3J7ZV 4L69A 1O0CA 3KTYA 3W2WB 4V194 4J3CA 1EXDA 3PIOS 1GTSA 3KY7A 4JWHA 1V6ZA 4YQCA 2HA8A 4YVJA 3OIIA 4CNFA 4YVIA 1X7OA 4YQ9A 1UAKA 1QRTA 4CNEA 1OY5A 4YQDA 5CO4A 4YPZA 4JXXA 3IEFA 4YQ2A 4YQIA 4JWJA 5HL7S 4X3LA 2ZJQS 4JYZA 4YQ6A 2ZJRS 4YQTA 5GM8A 4XBOA 4CNGA 2O3AA 5BNZA 3CF5S 1GTRA 3ILKA 3BBDA 1VHYA 4H4KA 4JWGA 4WFBS 2HZ7A 4YQGA 1IPAA 2Z0YA 3AI9X 3PIPS 3CZBA 2ZJPS 5FAIA 4YQ0A 4IOAS 5JVGS 4YPYA 1J85A 1O6DA 2QMMA 5DM7S 3BBHA 1Z85A 5GAGW 1K3RA 5GADW 2PNWA 3OIJA 4WFNS 1UALA 1MXIA 2I6DA 3X1LB 4WCES 1ZJRA 1P9PA 4PZKA 4YPXA 4YQ7A 3NK6A 4YVKA 1V2XA 2PJJA 1FEUA 3W2VB 4H3YA 5IZNA 3KNUA 4KDZA 4YQJA 4YQKA 5GMCA 4YQBA 1DFUP 4P2BA 1NS5A 4YQ5A 4YQ1A
chains in the Genus database with same CATH topology
1NXZA 4JAKA 2CX8A 2V3KA 3OINA 4FAKA 4MCDA 2QWVA 1VHKA 4YQOA 3AIAA 4X3MA 3O7BA 3IC6A 4IG6A 4MCBA 4YQQA 3AXZA 4YVHA 4JALA 3E5YA 3DCMX 4YQ3A 4YQSA 3L8UA 1X7PA 3KW2A 4YVGA 4YQLA 5D9FA 4YQAA 2V3JA 4YQNA 4YQ8A 1TO0A 3GYQA 1GZ0A 3N4KA 2EGVA 2EGWA 2YY8A 4JWFA 4MCCA 4E8BA 1UAJA 3BBEA 3NK7A 4YPWA 4YQRA 4KGNA 3N4JA 4YQPA 1VH0A 4YQ4A 3QUVA 2NWAA 4FMWA 1UAMA 4RG1A 5GMBA 4H3ZA 3ONPA 4L69A 3KTYA 4J3CA 3KY7A 4JWHA 1V6ZA 4YQCA 2HA8A 4YVJA 3OIIA 4CNFA 4YVIA 1X7OA 4YQ9A 1UAKA 4CNEA 1OY5A 4YQDA 5CO4A 4YPZA 3IEFA 4YQ2A 4YQIA 4JWJA 4X3LA 4CNGA 4CNDA 5GM8A 4YQ6A 4YQTA 4XBOA 2O3AA 3ILKA 3BBDA 1VHYA 4JWGA 4YQGA 1IPAA 2Z0YA 3AI9X 5FAIA 4YQ0A 4YPYA 1J85A 1O6DA 2QMMA 3BBHA 1Z85A 1K3RA 3OIJA 1UALA 1MXIA 2I6DA 1ZJRA 1P9PA 4PZKA 4YPXA 4YQ7A 3NK6A 4YVKA 1V2XA 4H3YA 3KNUA 4KDZA 4YQJA 4YQKA 5GMCA 4YQBA 1NS5A 4YQ5A 4YQ1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NXZ A;  4JAK A;  2CX8 A;  2V3K A;  3OIN A;  4FAK A;  4MCD A;  2QWV A;  1VHK A;  4YQO A;  3AIA A;  4X3M A;  3O7B A;  3IC6 A;  4IG6 A;  4MCB A;  4YQQ A;  3AXZ A;  4YVH A;  4JAL A;  3E5Y A;  3DCM X;  4YQ3 A;  4YQS A;  3L8U A;  1X7P A;  3KW2 A;  4YVG A;  4YQL A;  5D9F A;  4YQA A;  2V3J A;  4YQN A;  4YQ8 A;  1TO0 A;  3GYQ A;  1GZ0 A;  3N4K A;  2EGV A;  2EGW A;  2YY8 A;  4MCC A;  4E8B A;  1UAJ A;  3BBE A;  3NK7 A;  4YPW A;  4YQR A;  4KGN A;  3N4J A;  4YQP A;  1VH0 A;  4YQ4 A;  3QUV A;  2NWA A;  1UAM A;  4RG1 A;  5GMB A;  4H3Z A;  3ONP A;  4L69 A;  3KTY A;  4J3C A;  3KY7 A;  1V6Z A;  4YQC A;  2HA8 A;  4YVJ A;  3OII A;  4CNF A;  4YVI A;  1X7O A;  4YQ9 A;  1UAK A;  4CNE A;  1OY5 A;  4YQD A;  5CO4 A;  4YPZ A;  3IEF A;  4YQ2 A;  4YQI A;  4X3L A;  4CNG A;  4CND A;  5GM8 A;  4YQ6 A;  4YQT A;  4XBO A;  2O3A A;  3ILK A;  3BBD A;  1VHY A;  4YQG A;  1IPA A;  2Z0Y A;  3AI9 X;  5FAI A;  4YQ0 A;  4YPY A;  1J85 A;  1O6D A;  2QMM A;  3BBH A;  1Z85 A;  1K3R A;  3OIJ A;  1UAL A;  1MXI A;  2I6D A;  1ZJR A;  1P9P A;  4PZK A;  4YPX A;  4YQ7 A;  3NK6 A;  4YVK A;  1V2X A;  4H3Y A;  3KNU A;  4KDZ A;  4YQJ A;  4YQK A;  5GMC A;  4YQB A;  1NS5 A;  4YQ5 A;  4YQ1 A; 
#chains in the Genus database with same CATH topology
 1NXZ A;  1EUQ A;  4JAK A;  2CX8 A;  4UY8 8;  2G6G A;  2V3K A;  3OIN A;  4H3S A;  4FAK A;  4IO9 S;  1O0B A;  4MCD A;  2QWV A;  1UDX A;  5JVH S;  5DM6 S;  1NYL A;  1VHK A;  4YQO A;  4CND A;  1QTQ A;  2AE0 X;  3AIA A;  4X3M A;  1QRS A;  3O7B A;  3IC6 A;  4IG6 A;  2RD2 A;  2GAE A;  4MCB A;  4YQQ A;  3AXZ A;  4YVH A;  4JAL A;  3E5Y A;  2RE8 A;  3DCM X;  4YQ3 A;  5GAH W;  4YQS A;  3L8U A;  4WF9 S;  1X7P A;  3AII A;  4IOC S;  3KW2 A;  1D6K A;  2G5D A;  1ZJW A;  4YVG A;  5D9F A;  2V3J A;  4YQL A;  4YQA A;  4YQ8 A;  1TO0 A;  4YQN A;  4WFA S;  3GYQ A;  1GZ0 A;  3N4K A;  2EGV A;  2PIC A;  2EGW A;  2YY8 A;  4JWF A;  3DLL S;  2PI8 A;  4MCC A;  4E8B A;  1UAJ A;  3BBE A;  4JXZ A;  4U67 S;  3NK7 A;  5GAE W;  1QRU A;  4YPW A;  4YQR A;  4KGN A;  3N4J A;  4YQP A;  1VH0 A;  4YQ4 A;  3QUV A;  2NWA A;  1EUY A;  4FMW A;  1UAM A;  4RG1 A;  5GMB A;  1B75 A;  4H3Z A;  3ONP A;  3J7Z V;  4L69 A;  1O0C A;  3KTY A;  3W2W B;  4V19 4;  4J3C A;  1EXD A;  3PIO S;  1GTS A;  3KY7 A;  4JWH A;  1V6Z A;  4YQC A;  2HA8 A;  4YVJ A;  3OII A;  4CNF A;  4YVI A;  1X7O A;  4YQ9 A;  1UAK A;  1QRT A;  4CNE A;  1OY5 A;  4YQD A;  5CO4 A;  4YPZ A;  4JXX A;  3IEF A;  4YQ2 A;  4YQI A;  4JWJ A;  5HL7 S;  4X3L A;  2ZJQ S;  4JYZ A;  4YQ6 A;  2ZJR S;  4YQT A;  5GM8 A;  4XBO A;  4CNG A;  2O3A A;  5BNZ A;  3CF5 S;  1GTR A;  3ILK A;  3BBD A;  1VHY A;  4H4K A;  4JWG A;  4WFB S;  2HZ7 A;  4YQG A;  1IPA A;  2Z0Y A;  3AI9 X;  3PIP S;  3CZB A;  2ZJP S;  5FAI A;  4YQ0 A;  4IOA S;  5JVG S;  4YPY A;  1J85 A;  1O6D A;  2QMM A;  5DM7 S;  3BBH A;  1Z85 A;  5GAG W;  1K3R A;  5GAD W;  2PNW A;  3OIJ A;  4WFN S;  1UAL A;  1MXI A;  2I6D A;  3X1L B;  4WCE S;  1ZJR A;  1P9P A;  4PZK A;  4YPX A;  4YQ7 A;  3NK6 A;  4YVK A;  1V2X A;  2PJJ A;  1FEU A;  3W2V B;  4H3Y A;  5IZN A;  3KNU A;  4KDZ A;  4YQJ A;  4YQK A;  5GMC A;  4YQB A;  1DFU P;  4P2B A;  1NS5 A;  4YQ5 A;  4YQ1 A; 
#chains in the Genus database with same CATH homology
 1NXZ A;  4JAK A;  2CX8 A;  2V3K A;  3OIN A;  4FAK A;  4MCD A;  2QWV A;  1VHK A;  4YQO A;  3AIA A;  4X3M A;  3O7B A;  3IC6 A;  4IG6 A;  4MCB A;  4YQQ A;  3AXZ A;  4YVH A;  4JAL A;  3E5Y A;  3DCM X;  4YQ3 A;  4YQS A;  3L8U A;  1X7P A;  3KW2 A;  4YVG A;  4YQL A;  5D9F A;  4YQA A;  2V3J A;  4YQN A;  4YQ8 A;  1TO0 A;  3GYQ A;  1GZ0 A;  3N4K A;  2EGV A;  2EGW A;  2YY8 A;  4JWF A;  4MCC A;  4E8B A;  1UAJ A;  3BBE A;  3NK7 A;  4YPW A;  4YQR A;  4KGN A;  3N4J A;  4YQP A;  1VH0 A;  4YQ4 A;  3QUV A;  2NWA A;  4FMW A;  1UAM A;  4RG1 A;  5GMB A;  4H3Z A;  3ONP A;  4L69 A;  3KTY A;  4J3C A;  3KY7 A;  4JWH A;  1V6Z A;  4YQC A;  2HA8 A;  4YVJ A;  3OII A;  4CNF A;  4YVI A;  1X7O A;  4YQ9 A;  1UAK A;  4CNE A;  1OY5 A;  4YQD A;  5CO4 A;  4YPZ A;  3IEF A;  4YQ2 A;  4YQI A;  4JWJ A;  4X3L A;  4CNG A;  4CND A;  5GM8 A;  4YQ6 A;  4YQT A;  4XBO A;  2O3A A;  3ILK A;  3BBD A;  1VHY A;  4JWG A;  4YQG A;  1IPA A;  2Z0Y A;  3AI9 X;  5FAI A;  4YQ0 A;  4YPY A;  1J85 A;  1O6D A;  2QMM A;  3BBH A;  1Z85 A;  1K3R A;  3OIJ A;  1UAL A;  1MXI A;  2I6D A;  1ZJR A;  1P9P A;  4PZK A;  4YPX A;  4YQ7 A;  3NK6 A;  4YVK A;  1V2X A;  4H3Y A;  3KNU A;  4KDZ A;  4YQJ A;  4YQK A;  5GMC A;  4YQB A;  1NS5 A;  4YQ5 A;  4YQ1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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