2Z0YA

Crystal structure of ttha0657-sam complex
Total Genus 59
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
Knots found
sequence length
224
structure length
224
Chain Sequence
RAFSPGLTGVLPLRETRHLVEVLRARVGDRFTVFDGEREALAEVVDLGPPLRYRVLEERRPEREVGVEVVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAVALEAAKQSGRVVVPEVLPPIPLKAVPQVAQGLVAHVGATARVREVLDPEKPLALAVGPEGGFAEEEVALLEARGFTPVSLGRRILRAETAALALLALCTAGEGR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of TTHA0657-SAM complex
rcsb
source organism Thermus thermophilus
molecule tags Transferase
molecule keywords Putative uncharacterized protein TTHA0657
total genus 59
structure length 224
sequence length 224
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature
pdb deposition date 2007-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04452 Methyltrans_RNA RNA methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.20 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Hypothetical PUA domain-like; domain 1 2z0yA01
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 2z0yA02
3AXZA 4MCCA 5CO4A 2Z0YA 4CNGA 4IG6A 4YQNA 4YQCA 4MCBA 5FAIA 4YQ6A 3AI9X 1UAKA 4YQ5A 1UAJA 2O3AA 4YPXA 4CNEA 4YQGA 5GM8A 4CNDA 3N4KA 4JAKA 1VHYA 1VH0A 4YQ4A 4YQ3A 4YQ1A 3QUVA 3OINA 1NS5A 4J3CA 1TO0A 4YQQA 4YQLA 4YVKA 4H3ZA 3AIAA 3GYQA 5GMBA 3DCMX 4YPYA 4YQJA 4CNFA 1ZJRA 5D9FA 1X7OA 2QWVA 3L8UA 4KDZA 2CX8A 4YVHA 1MXIA 4YQDA 2EGWA 4YQ9A 4X3MA 4YPZA 2HA8A 1V2XA 3BBDA 4L69A 2V3JA 2QMMA 4YQ0A 4H3YA 3O7BA 3N4JA 4YQKA 3IEFA 1J85A 4XBOA 4E8BA 1UALA 3NK6A 3IC6A 1OY5A 4YQSA 3KNUA 4MCDA 4YQAA 4YVGA 2NWAA 1V6ZA 4YQIA 4YVJA 1K3RA 4YQ8A 4X3LA 3ONPA 1VHKA 1O6DA 1UAMA 4JALA 2EGVA 3BBEA 3OIJA 4PZKA 2V3KA 1P9PA 4YPWA 3KTYA 4YQPA 3KW2A 4FAKA 3OIIA 2I6DA 1X7PA 4YQ7A 5GMCA 4YQ2A 3ILKA 4YQRA 4YQBA 2YY8A 3NK7A 4RG1A 3E5YA 1Z85A 3KY7A 1IPAA 4YVIA 1NXZA 4KGNA 1GZ0A 4YQOA 3BBHA 4YQTA
chains in the Genus database with same CATH superfamily
4WF9S 5BNZA 3AXZA 4MCCA 5CO4A 2Z0YA 5GAGW 4CNGA 4IG6A 4YQNA 4JWFA 4YQCA 4MCBA 1QTQA 5FAIA 1B75A 2PJJA 4YQ6A 3AI9X 2G6GA 3W2WB 3PIPS 1UAKA 4YQ5A 1UAJA 2O3AA 4YPXA 4CNEA 4YQGA 5GM8A 4CNDA 4JXXA 2GAEA 3N4KA 2RD2A 4JAKA 1VHYA 1VH0A 4YQ4A 4WFAS 2PNWA 4YQ3A 4JWGA 2RE8A 3CZBA 4YQ1A 3QUVA 4V194 3OINA 1NS5A 4J3CA 4JYZA 1TO0A 4YQQA 4YQLA 4YVKA 4H3ZA 3AIAA 3GYQA 5GMBA 3DCMX 4YPYA 1EUQA 4YQJA 4H4KA 4JXZA 4CNFA 4JWJA 4WCES 1ZJRA 5D9FA 1X7OA 2QWVA 4P2BA 3L8UA 4KDZA 2CX8A 4YVHA 1ZJWA 1MXIA 4YQDA 2EGWA 5GADW 4YQ9A 4X3MA 4YPZA 4WFNS 2HA8A 1UDXA 1V2XA 3BBDA 4L69A 2PI8A 5IZNA 2QMMA 2V3JA 4YQ0A 5JVGS 1DFUP 4H3YA 3O7BA 2ZJQS 1GTSA 3N4JA 4YQKA 3IEFA 1EUYA 1J85A 4XBOA 1GTRA 4E8BA 1UALA 3NK6A 3IC6A 3PIOS 2ZJRS 1OY5A 4YQSA 3KNUA 4MCDA 2HZ7A 4YQAA 4YVGA 2NWAA 1EXDA 4U67S 1V6ZA 4IO9S 4YQIA 3J7ZV 4YVJA 1K3RA 4FMWA 4YQ8A 4IOAS 4X3LA 3ONPA 1VHKA 4IOCS 1O6DA 1UAMA 4JALA 2EGVA 3BBEA 3DLLS 1D6KA 3OIJA 4PZKA 2V3KA 1P9PA 1QRSA 4YPWA 1QRUA 3KTYA 4UY88 4YQPA 3KW2A 3CF5S 4FAKA 3OIIA 1QRTA 1X7PA 2I6DA 3X1LB 4JWHA 4YQ7A 3ILKA 5GMCA 4YQ2A 4YQRA 1FEUA 4WFBS 4H3SA 1NYLA 4YQBA 2YY8A 5GAEW 3NK7A 3W2VB 4RG1A 5JVHS 3E5YA 1Z85A 2AE0X 1O0CA 1O0BA 3KY7A 5DM7S 5DM6S 2G5DA 5GAHW 1IPAA 3AIIA 4YVIA 1NXZA 2ZJPS 4KGNA 1GZ0A 4YQOA 3BBHA 2PICA 4YQTA 5HL7S
chains in the Genus database with same CATH topology
3AXZA 4MCCA 5CO4A 2Z0YA 4CNGA 4IG6A 4YQNA 4JWFA 4YQCA 4MCBA 5FAIA 4YQ6A 3AI9X 1UAKA 4YQ5A 1UAJA 2O3AA 4YPXA 4CNEA 4YQGA 5GM8A 4CNDA 3N4KA 4JAKA 1VHYA 1VH0A 4YQ4A 4YQ3A 4JWGA 4YQ1A 3QUVA 3OINA 1NS5A 4J3CA 1TO0A 4YQQA 4YQLA 4YVKA 4H3ZA 3AIAA 3GYQA 5GMBA 3DCMX 4YPYA 4YQJA 4CNFA 4JWJA 1ZJRA 5D9FA 1X7OA 2QWVA 3L8UA 4KDZA 2CX8A 4YVHA 1MXIA 4YQDA 2EGWA 4YQ9A 4X3MA 4YPZA 2HA8A 1V2XA 3BBDA 4L69A 2V3JA 2QMMA 4YQ0A 4H3YA 3O7BA 3N4JA 4YQKA 3IEFA 1J85A 4XBOA 4E8BA 1UALA 3NK6A 3IC6A 1OY5A 4YQSA 3KNUA 4MCDA 4YQAA 4YVGA 2NWAA 1V6ZA 4YQIA 4YVJA 1K3RA 4FMWA 4YQ8A 4X3LA 3ONPA 1VHKA 1O6DA 1UAMA 4JALA 2EGVA 3BBEA 3OIJA 4PZKA 2V3KA 1P9PA 4YPWA 3KTYA 4YQPA 3KW2A 4FAKA 3OIIA 2I6DA 1X7PA 4YQ7A 5GMCA 4JWHA 4YQ2A 3ILKA 4YQRA 4YQBA 2YY8A 3NK7A 4RG1A 3E5YA 1Z85A 3KY7A 1IPAA 4YVIA 1NXZA 4KGNA 1GZ0A 4YQOA 3BBHA 4YQTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AXZ A;  4MCC A;  5CO4 A;  2Z0Y A;  4CNG A;  4IG6 A;  4YQN A;  4YQC A;  4MCB A;  5FAI A;  4YQ6 A;  3AI9 X;  1UAK A;  4YQ5 A;  1UAJ A;  2O3A A;  4YPX A;  4CNE A;  4YQG A;  5GM8 A;  4CND A;  3N4K A;  4JAK A;  1VHY A;  1VH0 A;  4YQ4 A;  4YQ3 A;  4YQ1 A;  3QUV A;  3OIN A;  1NS5 A;  4J3C A;  1TO0 A;  4YQQ A;  4YQL A;  4YVK A;  4H3Z A;  3AIA A;  3GYQ A;  5GMB A;  3DCM X;  4YPY A;  4YQJ A;  4CNF A;  1ZJR A;  5D9F A;  1X7O A;  2QWV A;  3L8U A;  4KDZ A;  2CX8 A;  4YVH A;  1MXI A;  4YQD A;  2EGW A;  4YQ9 A;  4X3M A;  4YPZ A;  2HA8 A;  1V2X A;  3BBD A;  4L69 A;  2V3J A;  2QMM A;  4YQ0 A;  4H3Y A;  3O7B A;  3N4J A;  4YQK A;  3IEF A;  1J85 A;  4XBO A;  4E8B A;  1UAL A;  3NK6 A;  3IC6 A;  1OY5 A;  4YQS A;  3KNU A;  4MCD A;  4YQA A;  4YVG A;  2NWA A;  1V6Z A;  4YQI A;  4YVJ A;  1K3R A;  4YQ8 A;  4X3L A;  3ONP A;  1VHK A;  1O6D A;  1UAM A;  4JAL A;  2EGV A;  3BBE A;  3OIJ A;  4PZK A;  2V3K A;  1P9P A;  4YPW A;  3KTY A;  4YQP A;  3KW2 A;  4FAK A;  3OII A;  2I6D A;  1X7P A;  4YQ7 A;  5GMC A;  4YQ2 A;  3ILK A;  4YQR A;  4YQB A;  2YY8 A;  3NK7 A;  4RG1 A;  3E5Y A;  1Z85 A;  3KY7 A;  1IPA A;  4YVI A;  1NXZ A;  4KGN A;  1GZ0 A;  4YQO A;  3BBH A;  4YQT A; 
#chains in the Genus database with same CATH topology
 4WF9 S;  5BNZ A;  3AXZ A;  4MCC A;  5CO4 A;  2Z0Y A;  5GAG W;  4CNG A;  4IG6 A;  4YQN A;  4JWF A;  4YQC A;  4MCB A;  1QTQ A;  5FAI A;  1B75 A;  2PJJ A;  4YQ6 A;  3AI9 X;  2G6G A;  3W2W B;  3PIP S;  1UAK A;  4YQ5 A;  1UAJ A;  2O3A A;  4YPX A;  4CNE A;  4YQG A;  5GM8 A;  4CND A;  4JXX A;  2GAE A;  3N4K A;  2RD2 A;  4JAK A;  1VHY A;  1VH0 A;  4YQ4 A;  4WFA S;  2PNW A;  4YQ3 A;  4JWG A;  2RE8 A;  3CZB A;  4YQ1 A;  3QUV A;  4V19 4;  3OIN A;  1NS5 A;  4J3C A;  4JYZ A;  1TO0 A;  4YQQ A;  4YQL A;  4YVK A;  4H3Z A;  3AIA A;  3GYQ A;  5GMB A;  3DCM X;  4YPY A;  1EUQ A;  4YQJ A;  4H4K A;  4JXZ A;  4CNF A;  4JWJ A;  4WCE S;  1ZJR A;  5D9F A;  1X7O A;  2QWV A;  4P2B A;  3L8U A;  4KDZ A;  2CX8 A;  4YVH A;  1ZJW A;  1MXI A;  4YQD A;  2EGW A;  5GAD W;  4YQ9 A;  4X3M A;  4YPZ A;  4WFN S;  2HA8 A;  1UDX A;  1V2X A;  3BBD A;  4L69 A;  2PI8 A;  5IZN A;  2QMM A;  2V3J A;  4YQ0 A;  5JVG S;  1DFU P;  4H3Y A;  3O7B A;  2ZJQ S;  1GTS A;  3N4J A;  4YQK A;  3IEF A;  1EUY A;  1J85 A;  4XBO A;  1GTR A;  4E8B A;  1UAL A;  3NK6 A;  3IC6 A;  3PIO S;  2ZJR S;  1OY5 A;  4YQS A;  3KNU A;  4MCD A;  2HZ7 A;  4YQA A;  4YVG A;  2NWA A;  1EXD A;  4U67 S;  1V6Z A;  4IO9 S;  4YQI A;  3J7Z V;  4YVJ A;  1K3R A;  4FMW A;  4YQ8 A;  4IOA S;  4X3L A;  3ONP A;  1VHK A;  4IOC S;  1O6D A;  1UAM A;  4JAL A;  2EGV A;  3BBE A;  3DLL S;  1D6K A;  3OIJ A;  4PZK A;  2V3K A;  1P9P A;  1QRS A;  4YPW A;  1QRU A;  3KTY A;  4UY8 8;  4YQP A;  3KW2 A;  3CF5 S;  4FAK A;  3OII A;  1QRT A;  1X7P A;  2I6D A;  3X1L B;  4JWH A;  4YQ7 A;  3ILK A;  5GMC A;  4YQ2 A;  4YQR A;  1FEU A;  4WFB S;  4H3S A;  1NYL A;  4YQB A;  2YY8 A;  5GAE W;  3NK7 A;  3W2V B;  4RG1 A;  5JVH S;  3E5Y A;  1Z85 A;  2AE0 X;  1O0C A;  1O0B A;  3KY7 A;  5DM7 S;  5DM6 S;  2G5D A;  5GAH W;  1IPA A;  3AII A;  4YVI A;  1NXZ A;  2ZJP S;  4KGN A;  1GZ0 A;  4YQO A;  3BBH A;  2PIC A;  4YQT A;  5HL7 S; 
#chains in the Genus database with same CATH homology
 3AXZ A;  4MCC A;  5CO4 A;  2Z0Y A;  4CNG A;  4IG6 A;  4YQN A;  4JWF A;  4YQC A;  4MCB A;  5FAI A;  4YQ6 A;  3AI9 X;  1UAK A;  4YQ5 A;  1UAJ A;  2O3A A;  4YPX A;  4CNE A;  4YQG A;  5GM8 A;  4CND A;  3N4K A;  4JAK A;  1VHY A;  1VH0 A;  4YQ4 A;  4YQ3 A;  4JWG A;  4YQ1 A;  3QUV A;  3OIN A;  1NS5 A;  4J3C A;  1TO0 A;  4YQQ A;  4YQL A;  4YVK A;  4H3Z A;  3AIA A;  3GYQ A;  5GMB A;  3DCM X;  4YPY A;  4YQJ A;  4CNF A;  4JWJ A;  1ZJR A;  5D9F A;  1X7O A;  2QWV A;  3L8U A;  4KDZ A;  2CX8 A;  4YVH A;  1MXI A;  4YQD A;  2EGW A;  4YQ9 A;  4X3M A;  4YPZ A;  2HA8 A;  1V2X A;  3BBD A;  4L69 A;  2V3J A;  2QMM A;  4YQ0 A;  4H3Y A;  3O7B A;  3N4J A;  4YQK A;  3IEF A;  1J85 A;  4XBO A;  4E8B A;  1UAL A;  3NK6 A;  3IC6 A;  1OY5 A;  4YQS A;  3KNU A;  4MCD A;  4YQA A;  4YVG A;  2NWA A;  1V6Z A;  4YQI A;  4YVJ A;  1K3R A;  4FMW A;  4YQ8 A;  4X3L A;  3ONP A;  1VHK A;  1O6D A;  1UAM A;  4JAL A;  2EGV A;  3BBE A;  3OIJ A;  4PZK A;  2V3K A;  1P9P A;  4YPW A;  3KTY A;  4YQP A;  3KW2 A;  4FAK A;  3OII A;  2I6D A;  1X7P A;  4YQ7 A;  5GMC A;  4JWH A;  4YQ2 A;  3ILK A;  4YQR A;  4YQB A;  2YY8 A;  3NK7 A;  4RG1 A;  3E5Y A;  1Z85 A;  3KY7 A;  1IPA A;  4YVI A;  1NXZ A;  4KGN A;  1GZ0 A;  4YQO A;  3BBH A;  4YQT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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