2Z0YA

Crystal structure of ttha0657-sam complex
Total Genus 59
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
Knots found
sequence length
224
structure length
224
Chain Sequence
RAFSPGLTGVLPLRETRHLVEVLRARVGDRFTVFDGEREALAEVVDLGPPLRYRVLEERRPEREVGVEVVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAVALEAAKQSGRVVVPEVLPPIPLKAVPQVAQGLVAHVGATARVREVLDPEKPLALAVGPEGGFAEEEVALLEARGFTPVSLGRRILRAETAALALLALCTAGEGR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
source organism Thermus thermophilus
publication title Crystal structure of TTHA0657-SAM complex
rcsb
molecule keywords Putative uncharacterized protein TTHA0657
total genus 59
structure length 224
sequence length 224
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature
pdb deposition date 2007-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04452 Methyltrans_RNA RNA methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.20 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Hypothetical PUA domain-like; domain 1 2z0yA01
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 2z0yA02
4YQPA 4RG1A 4YQNA 5GM8A 3KW2A 4YQ2A 4PZKA 4XBOA 1IPAA 3KY7A 5GMCA 3IC6A 4YQ7A 4YQ6A 4CNEA 4YQ8A 3ILKA 1Z85A 4X3LA 1J85A 3BBDA 4CNGA 4E8BA 4FAKA 2I6DA 1UAKA 4MCCA 5GMBA 3KNUA 2Z0YA 4YVIA 2V3JA 1GZ0A 1O6DA 4YPZA 1OY5A 1UAJA 1VH0A 3OINA 3GYQA 1VHYA 3DCMX 4JALA 1NS5A 1P9PA 4YQ3A 3N4KA 3E5YA 4YQGA 1X7PA 4YPYA 4YQDA 3N4JA 2O3AA 4JAKA 5D9FA 4MCDA 3BBEA 5CO4A 4YQAA 4YQ1A 4H3ZA 4YQJA 4CNDA 4YQ0A 4YVJA 2CX8A 5FAIA 4YQTA 2EGVA 3O7BA 2V3KA 3QUVA 1V6ZA 4YQ4A 1K3RA 4IG6A 3OIIA 3AXZA 2NWAA 4KGNA 1ZJRA 1X7OA 4YQLA 2QMMA 4YQBA 3IEFA 4CNFA 3ONPA 3BBHA 4YQIA 4YQ9A 1UALA 4YQ5A 4L69A 4MCBA 4YQQA 3AI9X 2EGWA 4YPXA 1NXZA 2QWVA 3L8UA 3KTYA 4YQKA 4YQOA 1TO0A 4H3YA 4YVGA 4J3CA 1UAMA 2YY8A 4YPWA 3NK7A 4YQRA 3NK6A 4X3MA 2HA8A 4YVKA 4YQSA 4YVHA 1MXIA 1V2XA 1VHKA 4YQCA 3AIAA 3OIJA 4KDZA
chains in the Genus database with same CATH superfamily
4YQPA 4IOCS 4RG1A 4YQNA 5GM8A 1EUQA 3KW2A 4YQ2A 4PZKA 4WFAS 4XBOA 1IPAA 4IOAS 3KY7A 5GMCA 3IC6A 4YQ7A 2RE8A 4YQ6A 4CNEA 4YQ8A 4U67S 3ILKA 1Z85A 4X3LA 1J85A 3BBDA 4CNGA 4WF9S 1EXDA 4FMWA 3PIOS 3DLLS 4E8BA 4JWGA 4FAKA 2I6DA 1UAKA 5GAEW 4MCCA 5GAGW 4YQ9A 5GMBA 3KNUA 2Z0YA 4H4KA 4YVIA 2HZ7A 5GADW 1GZ0A 1O6DA 2V3JA 4YPZA 1OY5A 1UAJA 4P2BA 1B75A 4JYZA 1VH0A 3OINA 3GYQA 1VHYA 5DM7S 3DCMX 1QRTA 4JALA 1NS5A 1P9PA 4YQ3A 3N4KA 1GTRA 3W2VB 3E5YA 4YQGA 5JVHS 4WCES 1X7PA 4YPYA 4YQDA 3N4JA 2O3AA 3CZBA 4JAKA 5D9FA 1ZJWA 4MCDA 3BBEA 5CO4A 4YQAA 4YQ1A 4H3ZA 1D6KA 4WFNS 4YQJA 1O0CA 4JXZA 2ZJRS 3J7ZV 4CNDA 4YQ0A 3W2WB 4YVJA 2CX8A 4WFBS 5FAIA 4JWHA 4YQTA 2EGVA 3O7BA 4UY88 2V3KA 3QUVA 2PJJA 1V6ZA 5BNZA 5HL7S 3X1LB 3PIPS 2AE0X 1K3RA 4IG6A 4YQ4A 5DM6S 3OIIA 3AXZA 4JXXA 2NWAA 3AIIA 4KGNA 1ZJRA 2ZJQS 1X7OA 4YQLA 2QMMA 4YQBA 1QTQA 2PNWA 5JVGS 3IEFA 4CNFA 2PI8A 2RD2A 3BBHA 3ONPA 4YQIA 1UALA 4H3SA 3CF5S 4JWFA 4YQ5A 4L69A 4MCBA 4YQQA 3AI9X 2EGWA 4YPXA 1NXZA 2QWVA 1QRUA 3L8UA 1UDXA 1GTSA 4V194 3KTYA 4YQKA 4YQOA 1TO0A 4H3YA 1DFUP 4YVGA 4J3CA 1O0BA 1UAMA 2YY8A 4YPWA 2PICA 5IZNA 5GAHW 2G5DA 3NK7A 3NK6A 4YQRA 4X3MA 1FEUA 2HA8A 4YVKA 4YQSA 4YVHA 1MXIA 1V2XA 2ZJPS 1VHKA 4YQCA 2G6GA 4IO9S 1QRSA 1EUYA 1NYLA 3AIAA 4JWJA 2GAEA 3OIJA 4KDZA
chains in the Genus database with same CATH topology
4YQPA 4RG1A 4YQNA 5GM8A 3KW2A 4YQ2A 4PZKA 4XBOA 1IPAA 3KY7A 5GMCA 3IC6A 4YQ7A 4YQ6A 4CNEA 4YQ8A 3ILKA 1Z85A 4X3LA 1J85A 3BBDA 4CNGA 4FMWA 4E8BA 4JWGA 4FAKA 2I6DA 1UAKA 4MCCA 5GMBA 3KNUA 2Z0YA 4YVIA 2V3JA 1GZ0A 1O6DA 4YPZA 1OY5A 1UAJA 1VH0A 3OINA 3GYQA 1VHYA 3DCMX 4JALA 1NS5A 1P9PA 4YQ3A 3N4KA 3E5YA 4YQGA 1X7PA 4YPYA 4YQDA 3N4JA 2O3AA 4JAKA 5D9FA 4MCDA 3BBEA 5CO4A 4YQAA 4YQ1A 4H3ZA 4YQJA 4CNDA 4YQ0A 4YVJA 2CX8A 5FAIA 4JWHA 4YQTA 2EGVA 3O7BA 2V3KA 3QUVA 1V6ZA 4YQ4A 1K3RA 4IG6A 3OIIA 3AXZA 2NWAA 4KGNA 1ZJRA 1X7OA 4YQLA 2QMMA 4YQBA 3IEFA 4CNFA 3ONPA 3BBHA 4YQIA 4YQ9A 1UALA 4YQ5A 4JWFA 4L69A 4MCBA 4YQQA 3AI9X 2EGWA 4YPXA 1NXZA 2QWVA 3L8UA 3KTYA 4YQKA 4YQOA 1TO0A 4H3YA 4YVGA 4J3CA 1UAMA 2YY8A 4YPWA 3NK7A 4YQRA 3NK6A 4X3MA 2HA8A 4YVKA 4YQSA 4YVHA 1MXIA 1V2XA 1VHKA 4YQCA 4JWJA 3AIAA 3OIJA 4KDZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YQP A;  4RG1 A;  4YQN A;  5GM8 A;  3KW2 A;  4YQ2 A;  4PZK A;  4XBO A;  1IPA A;  3KY7 A;  5GMC A;  3IC6 A;  4YQ7 A;  4YQ6 A;  4CNE A;  4YQ8 A;  3ILK A;  1Z85 A;  4X3L A;  1J85 A;  3BBD A;  4CNG A;  4E8B A;  4FAK A;  2I6D A;  1UAK A;  4MCC A;  5GMB A;  3KNU A;  2Z0Y A;  4YVI A;  2V3J A;  1GZ0 A;  1O6D A;  4YPZ A;  1OY5 A;  1UAJ A;  1VH0 A;  3OIN A;  3GYQ A;  1VHY A;  3DCM X;  4JAL A;  1NS5 A;  1P9P A;  4YQ3 A;  3N4K A;  3E5Y A;  4YQG A;  1X7P A;  4YPY A;  4YQD A;  3N4J A;  2O3A A;  4JAK A;  5D9F A;  4MCD A;  3BBE A;  5CO4 A;  4YQA A;  4YQ1 A;  4H3Z A;  4YQJ A;  4CND A;  4YQ0 A;  4YVJ A;  2CX8 A;  5FAI A;  4YQT A;  2EGV A;  3O7B A;  2V3K A;  3QUV A;  1V6Z A;  4YQ4 A;  1K3R A;  4IG6 A;  3OII A;  3AXZ A;  2NWA A;  4KGN A;  1ZJR A;  1X7O A;  4YQL A;  2QMM A;  4YQB A;  3IEF A;  4CNF A;  3ONP A;  3BBH A;  4YQI A;  4YQ9 A;  1UAL A;  4YQ5 A;  4L69 A;  4MCB A;  4YQQ A;  3AI9 X;  2EGW A;  4YPX A;  1NXZ A;  2QWV A;  3L8U A;  3KTY A;  4YQK A;  4YQO A;  1TO0 A;  4H3Y A;  4YVG A;  4J3C A;  1UAM A;  2YY8 A;  4YPW A;  3NK7 A;  4YQR A;  3NK6 A;  4X3M A;  2HA8 A;  4YVK A;  4YQS A;  4YVH A;  1MXI A;  1V2X A;  1VHK A;  4YQC A;  3AIA A;  3OIJ A;  4KDZ A; 
#chains in the Genus database with same CATH topology
 4YQP A;  4IOC S;  4RG1 A;  4YQN A;  5GM8 A;  1EUQ A;  3KW2 A;  4YQ2 A;  4PZK A;  4WFA S;  4XBO A;  1IPA A;  4IOA S;  3KY7 A;  5GMC A;  3IC6 A;  4YQ7 A;  2RE8 A;  4YQ6 A;  4CNE A;  4YQ8 A;  4U67 S;  3ILK A;  1Z85 A;  4X3L A;  1J85 A;  3BBD A;  4CNG A;  4WF9 S;  1EXD A;  4FMW A;  3PIO S;  3DLL S;  4E8B A;  4JWG A;  4FAK A;  2I6D A;  1UAK A;  5GAE W;  4MCC A;  5GAG W;  4YQ9 A;  5GMB A;  3KNU A;  2Z0Y A;  4H4K A;  4YVI A;  2HZ7 A;  5GAD W;  1GZ0 A;  1O6D A;  2V3J A;  4YPZ A;  1OY5 A;  1UAJ A;  4P2B A;  1B75 A;  4JYZ A;  1VH0 A;  3OIN A;  3GYQ A;  1VHY A;  5DM7 S;  3DCM X;  1QRT A;  4JAL A;  1NS5 A;  1P9P A;  4YQ3 A;  3N4K A;  1GTR A;  3W2V B;  3E5Y A;  4YQG A;  5JVH S;  4WCE S;  1X7P A;  4YPY A;  4YQD A;  3N4J A;  2O3A A;  3CZB A;  4JAK A;  5D9F A;  1ZJW A;  4MCD A;  3BBE A;  5CO4 A;  4YQA A;  4YQ1 A;  4H3Z A;  1D6K A;  4WFN S;  4YQJ A;  1O0C A;  4JXZ A;  2ZJR S;  3J7Z V;  4CND A;  4YQ0 A;  3W2W B;  4YVJ A;  2CX8 A;  4WFB S;  5FAI A;  4JWH A;  4YQT A;  2EGV A;  3O7B A;  4UY8 8;  2V3K A;  3QUV A;  2PJJ A;  1V6Z A;  5BNZ A;  5HL7 S;  3X1L B;  3PIP S;  2AE0 X;  1K3R A;  4IG6 A;  4YQ4 A;  5DM6 S;  3OII A;  3AXZ A;  4JXX A;  2NWA A;  3AII A;  4KGN A;  1ZJR A;  2ZJQ S;  1X7O A;  4YQL A;  2QMM A;  4YQB A;  1QTQ A;  2PNW A;  5JVG S;  3IEF A;  4CNF A;  2PI8 A;  2RD2 A;  3BBH A;  3ONP A;  4YQI A;  1UAL A;  4H3S A;  3CF5 S;  4JWF A;  4YQ5 A;  4L69 A;  4MCB A;  4YQQ A;  3AI9 X;  2EGW A;  4YPX A;  1NXZ A;  2QWV A;  1QRU A;  3L8U A;  1UDX A;  1GTS A;  4V19 4;  3KTY A;  4YQK A;  4YQO A;  1TO0 A;  4H3Y A;  1DFU P;  4YVG A;  4J3C A;  1O0B A;  1UAM A;  2YY8 A;  4YPW A;  2PIC A;  5IZN A;  5GAH W;  2G5D A;  3NK7 A;  3NK6 A;  4YQR A;  4X3M A;  1FEU A;  2HA8 A;  4YVK A;  4YQS A;  4YVH A;  1MXI A;  1V2X A;  2ZJP S;  1VHK A;  4YQC A;  2G6G A;  4IO9 S;  1QRS A;  1EUY A;  1NYL A;  3AIA A;  4JWJ A;  2GAE A;  3OIJ A;  4KDZ A; 
#chains in the Genus database with same CATH homology
 4YQP A;  4RG1 A;  4YQN A;  5GM8 A;  3KW2 A;  4YQ2 A;  4PZK A;  4XBO A;  1IPA A;  3KY7 A;  5GMC A;  3IC6 A;  4YQ7 A;  4YQ6 A;  4CNE A;  4YQ8 A;  3ILK A;  1Z85 A;  4X3L A;  1J85 A;  3BBD A;  4CNG A;  4FMW A;  4E8B A;  4JWG A;  4FAK A;  2I6D A;  1UAK A;  4MCC A;  5GMB A;  3KNU A;  2Z0Y A;  4YVI A;  2V3J A;  1GZ0 A;  1O6D A;  4YPZ A;  1OY5 A;  1UAJ A;  1VH0 A;  3OIN A;  3GYQ A;  1VHY A;  3DCM X;  4JAL A;  1NS5 A;  1P9P A;  4YQ3 A;  3N4K A;  3E5Y A;  4YQG A;  1X7P A;  4YPY A;  4YQD A;  3N4J A;  2O3A A;  4JAK A;  5D9F A;  4MCD A;  3BBE A;  5CO4 A;  4YQA A;  4YQ1 A;  4H3Z A;  4YQJ A;  4CND A;  4YQ0 A;  4YVJ A;  2CX8 A;  5FAI A;  4JWH A;  4YQT A;  2EGV A;  3O7B A;  2V3K A;  3QUV A;  1V6Z A;  4YQ4 A;  1K3R A;  4IG6 A;  3OII A;  3AXZ A;  2NWA A;  4KGN A;  1ZJR A;  1X7O A;  4YQL A;  2QMM A;  4YQB A;  3IEF A;  4CNF A;  3ONP A;  3BBH A;  4YQI A;  4YQ9 A;  1UAL A;  4YQ5 A;  4JWF A;  4L69 A;  4MCB A;  4YQQ A;  3AI9 X;  2EGW A;  4YPX A;  1NXZ A;  2QWV A;  3L8U A;  3KTY A;  4YQK A;  4YQO A;  1TO0 A;  4H3Y A;  4YVG A;  4J3C A;  1UAM A;  2YY8 A;  4YPW A;  3NK7 A;  4YQR A;  3NK6 A;  4X3M A;  2HA8 A;  4YVK A;  4YQS A;  4YVH A;  1MXI A;  1V2X A;  1VHK A;  4YQC A;  4JWJ A;  3AIA A;  3OIJ A;  4KDZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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