2Z0YA

Crystal structure of ttha0657-sam complex
Total Genus 59
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
Knots found
sequence length
224
structure length
224
Chain Sequence
b'RAFSPGLTGVLPLRETRHLVEVLRARVGDRFTVFDGEREALAEVVDLGPPLRYRVLEERRPEREVGVEVVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAVALEAAKQSGRVVVPEVLPPIPLKAVPQVAQGLVAHVGATARVREVLDPEKPLALAVGPEGGFAEEEVALLEARGFTPVSLGRRILRAETAALALLALCTAGEGR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of TTHA0657-SAM complex
rcsb
molecule keywords Putative uncharacterized protein TTHA0657
source organism Thermus thermophilus
molecule tags Transferase
total genus 59
structure length 224
sequence length 224
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature
pdb deposition date 2007-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04452 Methyltrans_RNA RNA methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.20 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Hypothetical PUA domain-like; domain 1 2z0yA01
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 2z0yA02
1GZ0A 4YQLA 5FAIA 5CO4A 4YQ1A 4J3CA 2HA8A 4JALA 4YVGA 3AIAA 3BBDA 4YVIA 5GMBA 1NS5A 4YQ6A 1UAJA 4H3YA 2NWAA 3KY7A 3O7BA 4XBOA 4YQIA 3KW2A 1NXZA 4FAKA 2V3KA 4YQ4A 4MCDA 4H3ZA 4CNFA 4YPXA 3GYQA 2V3JA 4X3LA 3AXZA 2YY8A 4X3MA 4YQKA 4CNEA 1X7PA 3IEFA 3N4KA 4YQ3A 4E8BA 3BBEA 3AI9X 4YVHA 2EGVA 5GMCA 4YQPA 1VHYA 4YQNA 2QWVA 3IC6A 3OINA 4YQRA 1K3RA 1V2XA 3ONPA 4RG1A 4YQBA 4YQGA 1VHKA 4YQ8A 1V6ZA 3QUVA 4KGNA 4YQOA 1O6DA 4YQQA 4YPYA 4MCBA 4YVKA 1VH0A 4YQDA 1OY5A 3E5YA 1UAKA 4JAKA 2I6DA 4YPZA 4YQ7A 4L69A 4YQ2A 4YVJA 1J85A 3OIJA 2QMMA 5GM8A 4YQ9A 1MXIA 1IPAA 3OIIA 3NK7A 1ZJRA 4MCCA 1X7OA 3NK6A 4YQTA 4YQ0A 4CNGA 1Z85A 3N4JA 4YPWA 1UALA 3BBHA 4PZKA 1TO0A 2EGWA 4YQJA 5D9FA 3KNUA 2O3AA 4YQAA 4YQCA 2Z0YA 1P9PA 4YQSA 3L8UA 4KDZA 3KTYA 3ILKA 2CX8A 3DCMX 4CNDA 4IG6A 1UAMA 4YQ5A
chains in the Genus database with same CATH superfamily
1GZ0A 4YQLA 5FAIA 1FEUA 1QRUA 1GTRA 5CO4A 1UDXA 4JXZA 4IO9S 4YQ1A 4J3CA 2HA8A 4JALA 5GAHW 3DLLS 4YVGA 3AIAA 3PIPS 3BBDA 3CF5S 3W2VB 4JWHA 2HZ7A 5GAEW 5IZNA 4YVIA 5GMBA 1O0CA 1NS5A 5JVGS 4JWFA 4YQ6A 1UAJA 4WFNS 1DFUP 4H3YA 4JWGA 3J7ZV 2NWAA 5JVHS 3KY7A 3O7BA 4XBOA 2ZJPS 4IOAS 4YQIA 3KW2A 1NXZA 4FAKA 5DM7S 2G5DA 2PICA 5GADW 2V3KA 4H3ZA 4MCDA 4CNFA 4YQ4A 4YPXA 4JXXA 3GYQA 2V3JA 4X3LA 4WFBS 5GAGW 4WFAS 3AXZA 2YY8A 4X3MA 1QRSA 4YQKA 4CNEA 1QRTA 1X7PA 3IEFA 3N4KA 4YQ3A 4E8BA 3PIOS 3AI9X 3BBEA 4YVHA 2PNWA 2PI8A 4P2BA 2EGVA 5GMCA 1NYLA 4YQPA 1VHYA 4YQNA 2QWVA 3IC6A 3OINA 4YQRA 3W2WB 1K3RA 1V2XA 5DM6S 5HL7S 3ONPA 4RG1A 2ZJRS 1B75A 4YQBA 4YQGA 1VHKA 4YQ8A 1V6ZA 2G6GA 1D6KA 2GAEA 3QUVA 4KGNA 4YQOA 1O6DA 4YQQA 4YPYA 4H4KA 4MCBA 4YVKA 4IOCS 1VH0A 3CZBA 4YQDA 1EUYA 1OY5A 3E5YA 4V194 4JYZA 4U67S 1UAKA 1ZJWA 4JAKA 2I6DA 4YPZA 4YQ7A 2AE0X 4JWJA 4L69A 2PJJA 4YQ2A 4YVJA 1J85A 3OIJA 4WF9S 2QMMA 4UY88 1O0BA 5GM8A 4YQ9A 3AIIA 1MXIA 1IPAA 3OIIA 3NK7A 1ZJRA 5BNZA 2RE8A 4MCCA 1X7OA 3NK6A 4CNDA 4WCES 4YQTA 4YQ0A 4CNGA 1Z85A 3N4JA 4YPWA 1UALA 3BBHA 4PZKA 1GTSA 1TO0A 2EGWA 4YQJA 2ZJQS 2RD2A 3KNUA 2O3AA 1EXDA 4H3SA 5D9FA 4YQAA 4YQCA 2Z0YA 1P9PA 4YQSA 3L8UA 4FMWA 4KDZA 3KTYA 3ILKA 2CX8A 1EUQA 1QTQA 3DCMX 3X1LB 4IG6A 1UAMA 4YQ5A
chains in the Genus database with same CATH topology
1GZ0A 4YQLA 5FAIA 5CO4A 4YQ1A 4J3CA 2HA8A 4JALA 4YVGA 3AIAA 3BBDA 4JWHA 4YVIA 5GMBA 1NS5A 4JWFA 4YQ6A 1UAJA 4H3YA 4JWGA 2NWAA 3KY7A 3O7BA 4XBOA 4YQIA 3KW2A 1NXZA 4FAKA 2V3KA 4YQ4A 4MCDA 4H3ZA 4CNFA 4YPXA 3GYQA 2V3JA 4X3LA 3AXZA 2YY8A 4X3MA 4YQKA 4CNEA 1X7PA 3IEFA 3N4KA 4YQ3A 4E8BA 3BBEA 3AI9X 4YVHA 2EGVA 5GMCA 4YQPA 1VHYA 4YQNA 2QWVA 3IC6A 3OINA 4YQRA 1K3RA 1V2XA 3ONPA 4RG1A 4YQBA 4YQGA 1VHKA 4YQ8A 1V6ZA 3QUVA 4KGNA 4YQOA 1O6DA 4YQQA 4YPYA 4MCBA 4YVKA 1VH0A 4YQDA 1OY5A 3E5YA 1UAKA 4JAKA 2I6DA 4YPZA 4YQ7A 4JWJA 4L69A 4YQ2A 4YVJA 1J85A 3OIJA 2QMMA 5GM8A 4YQ9A 1MXIA 1IPAA 3OIIA 3NK7A 1ZJRA 4MCCA 1X7OA 3NK6A 4YQTA 4YQ0A 4CNGA 1Z85A 3N4JA 4YPWA 1UALA 3BBHA 4PZKA 1TO0A 2EGWA 4YQJA 5D9FA 3KNUA 2O3AA 4YQAA 4YQCA 2Z0YA 1P9PA 4YQSA 3L8UA 4FMWA 4KDZA 3KTYA 3ILKA 2CX8A 3DCMX 4CNDA 4IG6A 1UAMA 4YQ5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GZ0 A;  4YQL A;  5FAI A;  5CO4 A;  4YQ1 A;  4J3C A;  2HA8 A;  4JAL A;  4YVG A;  3AIA A;  3BBD A;  4YVI A;  5GMB A;  1NS5 A;  4YQ6 A;  1UAJ A;  4H3Y A;  2NWA A;  3KY7 A;  3O7B A;  4XBO A;  4YQI A;  3KW2 A;  1NXZ A;  4FAK A;  2V3K A;  4YQ4 A;  4MCD A;  4H3Z A;  4CNF A;  4YPX A;  3GYQ A;  2V3J A;  4X3L A;  3AXZ A;  2YY8 A;  4X3M A;  4YQK A;  4CNE A;  1X7P A;  3IEF A;  3N4K A;  4YQ3 A;  4E8B A;  3BBE A;  3AI9 X;  4YVH A;  2EGV A;  5GMC A;  4YQP A;  1VHY A;  4YQN A;  2QWV A;  3IC6 A;  3OIN A;  4YQR A;  1K3R A;  1V2X A;  3ONP A;  4RG1 A;  4YQB A;  4YQG A;  1VHK A;  4YQ8 A;  1V6Z A;  3QUV A;  4KGN A;  4YQO A;  1O6D A;  4YQQ A;  4YPY A;  4MCB A;  4YVK A;  1VH0 A;  4YQD A;  1OY5 A;  3E5Y A;  1UAK A;  4JAK A;  2I6D A;  4YPZ A;  4YQ7 A;  4L69 A;  4YQ2 A;  4YVJ A;  1J85 A;  3OIJ A;  2QMM A;  5GM8 A;  4YQ9 A;  1MXI A;  1IPA A;  3OII A;  3NK7 A;  1ZJR A;  4MCC A;  1X7O A;  3NK6 A;  4YQT A;  4YQ0 A;  4CNG A;  1Z85 A;  3N4J A;  4YPW A;  1UAL A;  3BBH A;  4PZK A;  1TO0 A;  2EGW A;  4YQJ A;  5D9F A;  3KNU A;  2O3A A;  4YQA A;  4YQC A;  2Z0Y A;  1P9P A;  4YQS A;  3L8U A;  4KDZ A;  3KTY A;  3ILK A;  2CX8 A;  3DCM X;  4CND A;  4IG6 A;  1UAM A;  4YQ5 A; 
#chains in the Genus database with same CATH topology
 1GZ0 A;  4YQL A;  5FAI A;  1FEU A;  1QRU A;  1GTR A;  5CO4 A;  1UDX A;  4JXZ A;  4IO9 S;  4YQ1 A;  4J3C A;  2HA8 A;  4JAL A;  5GAH W;  3DLL S;  4YVG A;  3AIA A;  3PIP S;  3BBD A;  3CF5 S;  3W2V B;  4JWH A;  2HZ7 A;  5GAE W;  5IZN A;  4YVI A;  5GMB A;  1O0C A;  1NS5 A;  5JVG S;  4JWF A;  4YQ6 A;  1UAJ A;  4WFN S;  1DFU P;  4H3Y A;  4JWG A;  3J7Z V;  2NWA A;  5JVH S;  3KY7 A;  3O7B A;  4XBO A;  2ZJP S;  4IOA S;  4YQI A;  3KW2 A;  1NXZ A;  4FAK A;  5DM7 S;  2G5D A;  2PIC A;  5GAD W;  2V3K A;  4H3Z A;  4MCD A;  4CNF A;  4YQ4 A;  4YPX A;  4JXX A;  3GYQ A;  2V3J A;  4X3L A;  4WFB S;  5GAG W;  4WFA S;  3AXZ A;  2YY8 A;  4X3M A;  1QRS A;  4YQK A;  4CNE A;  1QRT A;  1X7P A;  3IEF A;  3N4K A;  4YQ3 A;  4E8B A;  3PIO S;  3AI9 X;  3BBE A;  4YVH A;  2PNW A;  2PI8 A;  4P2B A;  2EGV A;  5GMC A;  1NYL A;  4YQP A;  1VHY A;  4YQN A;  2QWV A;  3IC6 A;  3OIN A;  4YQR A;  3W2W B;  1K3R A;  1V2X A;  5DM6 S;  5HL7 S;  3ONP A;  4RG1 A;  2ZJR S;  1B75 A;  4YQB A;  4YQG A;  1VHK A;  4YQ8 A;  1V6Z A;  2G6G A;  1D6K A;  2GAE A;  3QUV A;  4KGN A;  4YQO A;  1O6D A;  4YQQ A;  4YPY A;  4H4K A;  4MCB A;  4YVK A;  4IOC S;  1VH0 A;  3CZB A;  4YQD A;  1EUY A;  1OY5 A;  3E5Y A;  4V19 4;  4JYZ A;  4U67 S;  1UAK A;  1ZJW A;  4JAK A;  2I6D A;  4YPZ A;  4YQ7 A;  2AE0 X;  4JWJ A;  4L69 A;  2PJJ A;  4YQ2 A;  4YVJ A;  1J85 A;  3OIJ A;  4WF9 S;  2QMM A;  4UY8 8;  1O0B A;  5GM8 A;  4YQ9 A;  3AII A;  1MXI A;  1IPA A;  3OII A;  3NK7 A;  1ZJR A;  5BNZ A;  2RE8 A;  4MCC A;  1X7O A;  3NK6 A;  4CND A;  4WCE S;  4YQT A;  4YQ0 A;  4CNG A;  1Z85 A;  3N4J A;  4YPW A;  1UAL A;  3BBH A;  4PZK A;  1GTS A;  1TO0 A;  2EGW A;  4YQJ A;  2ZJQ S;  2RD2 A;  3KNU A;  2O3A A;  1EXD A;  4H3S A;  5D9F A;  4YQA A;  4YQC A;  2Z0Y A;  1P9P A;  4YQS A;  3L8U A;  4FMW A;  4KDZ A;  3KTY A;  3ILK A;  2CX8 A;  1EUQ A;  1QTQ A;  3DCM X;  3X1L B;  4IG6 A;  1UAM A;  4YQ5 A; 
#chains in the Genus database with same CATH homology
 1GZ0 A;  4YQL A;  5FAI A;  5CO4 A;  4YQ1 A;  4J3C A;  2HA8 A;  4JAL A;  4YVG A;  3AIA A;  3BBD A;  4JWH A;  4YVI A;  5GMB A;  1NS5 A;  4JWF A;  4YQ6 A;  1UAJ A;  4H3Y A;  4JWG A;  2NWA A;  3KY7 A;  3O7B A;  4XBO A;  4YQI A;  3KW2 A;  1NXZ A;  4FAK A;  2V3K A;  4YQ4 A;  4MCD A;  4H3Z A;  4CNF A;  4YPX A;  3GYQ A;  2V3J A;  4X3L A;  3AXZ A;  2YY8 A;  4X3M A;  4YQK A;  4CNE A;  1X7P A;  3IEF A;  3N4K A;  4YQ3 A;  4E8B A;  3BBE A;  3AI9 X;  4YVH A;  2EGV A;  5GMC A;  4YQP A;  1VHY A;  4YQN A;  2QWV A;  3IC6 A;  3OIN A;  4YQR A;  1K3R A;  1V2X A;  3ONP A;  4RG1 A;  4YQB A;  4YQG A;  1VHK A;  4YQ8 A;  1V6Z A;  3QUV A;  4KGN A;  4YQO A;  1O6D A;  4YQQ A;  4YPY A;  4MCB A;  4YVK A;  1VH0 A;  4YQD A;  1OY5 A;  3E5Y A;  1UAK A;  4JAK A;  2I6D A;  4YPZ A;  4YQ7 A;  4JWJ A;  4L69 A;  4YQ2 A;  4YVJ A;  1J85 A;  3OIJ A;  2QMM A;  5GM8 A;  4YQ9 A;  1MXI A;  1IPA A;  3OII A;  3NK7 A;  1ZJR A;  4MCC A;  1X7O A;  3NK6 A;  4YQT A;  4YQ0 A;  4CNG A;  1Z85 A;  3N4J A;  4YPW A;  1UAL A;  3BBH A;  4PZK A;  1TO0 A;  2EGW A;  4YQJ A;  5D9F A;  3KNU A;  2O3A A;  4YQA A;  4YQC A;  2Z0Y A;  1P9P A;  4YQS A;  3L8U A;  4FMW A;  4KDZ A;  3KTY A;  3ILK A;  2CX8 A;  3DCM X;  4CND A;  4IG6 A;  1UAM A;  4YQ5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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