2Z1QA

Crystal structure of acyl coa dehydrogenase
Total Genus 208
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
208
sequence length
573
structure length
546
Chain Sequence
KKLWQKGGGWLLEVPERVYTPEDFDESVKEIARTTRTFVEREVLPLLERMEHGELELNVPLMRKAGELGLLAIDVPEEYGGLDLPKVISTVVAEELSGSGGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAAYCLTEPGSGSDALAAKTRATLSEDGKHYILNGVKQWISNAGFAHLFTVFAKVDGEHFTAFLVERDTPGLSFGPEEKKMGIKASSTRQVILEDVKVPVENVLGEIGKGHKIAFNVLNVGRYKLGAGAVGGAKRALELSAQYATQRVQFGRPIGRFGLIQQKLGEMASRIYAAESAVYRTVGLIDEALLGKKGPEAVMAGIEEYAVEASIIKVLGSEVLDYVVDEGVQIHGGYGYSQEYPIERAYRDARINRIFEGTNEINRLLIPGMLLRREDLELHQVQNLKKLALMVAGLAVQKYGQGVEEEQEVLGAVADILIDAYAAESALLRARRLGGLAPVLARIYLAQALDRAQAGALSVLPRLVEGDEARVVYSAARRLTKREPGDLVALRRQAAEAVLEAGGYPIPR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Acyl-CoA dehydrogenase
publication title Crystal structure of acyl CoA dehydrogenase from Thermus thermophilus HB8
rcsb
source organism Thermus thermophilus
total genus 208
structure length 546
sequence length 573
chains with identical sequence B
ec nomenclature ec 1.3.99.3: Transferred entry: 1.3.8.7, 1.3.8.8 and 1.3.8.9.
pdb deposition date 2007-05-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 2z1qA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 2z1qA03
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 2z1qA04
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 2z1qA02
3B96A 4ZYJA 1OAHA 2RDZA 2FONA 3GM6A 2R0NA 2UXWA 3MPIA 3S7WA 2PG0A 1RX0A 4X28A 4RM7A 3M9VA 1FS8A 2VR0A 3UBRA 4Q1OA 4X28C 3GNCA 3SWOA 3OWAA 2Z1QA 3AFFA 2YYMA 2A1TA 4L1FA 2D29A 4OO2A 2YYKA 3BNGA 1IS2A 1R2JA 2RFQA 2REHA 4L3XA 2DDHA 2E80A 4L3YA 4IRNA 4KTOA 3OWMA 1EGEA 1UKWA 2OT4A 3F29A 1BUCA 4ZXVA 4L38A 2ZAFA 5K3IA 3D9GA 1U8VA 4DOYA 2DVLA 3FO3A 1IVHA 3EOMA 3FCJA 2JBTA 4HR3A 3NF4A 1W07A 3D6BA 3MDEA 4L3ZA 5K3JA 3OIBA 1FS7A 3HWCA 4WJYA 4KCFA 2ZO5A 4P13A 3D9FA 3D9DA 2IX6A 2JBSA 1WS9A 4JEKA 2J7AA 3D9EA 2VIGA 1JQIA 3BNHA 4Q5BA 2OR0A 3RKHA 1EGCA 1QDBA 2JIFA 4IV6A 3TORA 1SIRA 2R0MA 2YYLA 1SIQA 1FS9A 4M9AA 1GU6A 3II9A 1UDYA 3P4TA 5K3GA 3X0XA 2IX5A 3LGQA 1EGDA 3SCEA 2E81A 4NXLA 3GQTA 3BNJA 3SF6A 4Q17A 2C0UA 3R7KA 3LG1A 4N5FA 4XVXA 3UU9A 2YYIA 2CX9A 3MKHA 3EONA 2YYGA 4Q0TA 3D1IA 2RF7A 3BNFA 2C12A 3MPJA 4G5EA 3TTBA 3MXLA 2WBIA 4U83A 4O5MA 3SXQA 4Q4UA 2YYJA 5K3HA 3MDDA 4Q5CA 3X0YA 4W9UA 2EBAA 2JBRA 3AFEA 3PFDA 3L1TA 1T9GA 3MMOA
chains in the Genus database with same CATH superfamily
3B96A 4ZYJA 1XFXA 2BU2A 2OJQA 2QR4A 2ZDXA 4V26A 5M4MA 5EZ3A 1OAHA 2RDZA 3Q23A 2FONA 1Y8NA 3GM6A 2R0NA 2UXWA 3MPIA 2F6LA 3S7WA 2PG0A 1K93A 1JM6A 1RX0A 4X28A 4RM7A 3M9VA 2XS8A 1LVCA 1FS8A 2VR0A 3UBRA 4Q1OA 5J71A 4X28C 3GNCA 3SWOA 3OWAA 2Z1QA 3AFFA 1XFUA 2YYMA 2A1TA 4G97A 4L1FA 2D29A 2CJ6A 2XQRB 4E01A 4OO2A 2YYKA 3BNGA 3C2PA 1IS2A 1R2JA 2OEXA 2RFQA 2REHA 2AZEA 2DDHA 1Y0VA 2E80A 3KMLA 4IRNA 4L3XA 4L3YA 3X29A 3Q0AA 1K8TA 4KTOA 4JIOA 2FP1A 3OWMA 1EGEA 2AO2A 3C3LA 1UKWA 4F0XA 2OT4A 4AI6A 3F29A 1K90A 3CRKA 3TZ2A 1BUCA 4KSAA 4FF4A 4ZXVA 4L38A 2Q8IA 2ZAFA 4AKGA 5K3IA 3D9GA 2OEVA 2LFWA 1U8VA 1Y8OA 4DOYA 2DVLA 3FO3A 3SCEA 4E00A 1IVHA 3EOMA 4P79A 5BRKA 3FCJA 2JBTA 4HR3A 3NF4A 1W07A 3D6BA 3MDEA 1X90A 2BTZA 5K3JA 2FP2A 4L3ZA 1XFZA 3OIBA 4FZ4A 1FS7A 3HWCA 1GKXA 4WJYA 4KCFA 4KS9A 5M4KA 3DJLA 2ZO5A 4P13A 1GJVA 3CE2A 3D9FA 2XS1A 3D9DA 4MPCA 2BU7A 2IX6A 2JBSA 4H81A 4MPEA 4QICA 3VADA 4E02A 1WS9A 4JEKA 2J7AA 2CJ4A 5B5WA 2YGWA 3D9EA 4FF3A 2VIGA 2R05A 1JQIA 3BNHA 4Q5BA 4H85A 2Q8FA 3TZ4A 2OR0A 3RKHA 1EGCA 1QDBA 3N0RA 2Q8HA 1XG2B 2Q8GA 2JIFA 4KSFA 4IV6A 3TORA 2R03A 1SIRA 4LQQB 2R0MA 2PNRA 2YYLA 4V25A 3TZ5A 1SIQA 3VKGA 1FS9A 4M9AA 1PK0A 4H7QA 2VF1A 1GU6A 2R02A 3II9A 3U33A 1UDYA 4MP7A 1SC5A 3P4TA 1X91A 5K3GA 1R3BA 3X0XA 2IX5A 1S26A 2E0AA 3LGQA 3TZ0A 3Q24A 1EGDA 1RJ4A 2E81A 4NXLA 3GQTA 3BNJA 3SF6A 4HKRA 2HJNA 4Q17A 5GJVE 4DZYA 2EBFX 5J6AA 2C0UA 2PO4A 4AKIA 4HKSA 3R7KA 3LG1A 3VKHA 4N5FA 4XVXA 4MPNA 3UU9A 2YYIA 2CX9A 4J1VA 4AKHA 3MKHA 5B5VA 2BU6A 3Q22A 4MP2A 1RJ1A 3EONA 2YYGA 1XFWA 4Q0TA 3D1IA 1XFYA 2RF7A 4LQSB 5GJWE 5B6BA 3BNFA 4FF1A 2ZKJA 1Y8PA 4FF2A 2C12A 1GKZA 2ZDYA 2EC5A 1X8ZA 4JIZA 3MPJA 2EBHX 5M4PA 2CJ5A 4G5EA 1SK6A 3TTBA 2GBBA 3MXLA 2WBIA 5M4NA 4U83A 4O5MA 3CRLA 1XFVA 5BRMA 1RP3A 4Q4UA 2BU8A 2BU5A 3D2RA 3SXQA 2CJ7A 2CJ8A 2YYJA 5K3HA 3MDDA 4Q5CA 3X0YA 4W9UA 1PI1A 2EBAA 2JBRA 3AFEA 3PFDA 3L1TA 1T9GA 3C46A 3MMOA
chains in the Genus database with same CATH topology
3B96A 4ZYJA 1OAHA 2RDZA 2FONA 3GM6A 2R0NA 2UXWA 3MPIA 3S7WA 2PG0A 1RX0A 4X28A 4RM7A 3M9VA 1FS8A 2VR0A 3UBRA 4Q1OA 4X28C 3GNCA 3SWOA 3OWAA 2Z1QA 3AFFA 2YYMA 2A1TA 4L1FA 2D29A 4OO2A 2YYKA 3BNGA 1IS2A 1R2JA 2RFQA 2REHA 4L3XA 2DDHA 2E80A 4L3YA 4IRNA 4KTOA 3OWMA 1EGEA 1UKWA 2OT4A 3F29A 1BUCA 4ZXVA 4L38A 2ZAFA 5K3IA 3D9GA 1U8VA 4DOYA 2DVLA 3FO3A 1IVHA 3EOMA 3FCJA 2JBTA 4HR3A 3NF4A 1W07A 3D6BA 3MDEA 4L3ZA 5K3JA 3OIBA 1FS7A 3HWCA 4WJYA 4KCFA 2ZO5A 4P13A 3D9FA 3D9DA 2IX6A 2JBSA 1WS9A 4JEKA 2J7AA 3D9EA 2VIGA 1JQIA 3BNHA 4Q5BA 2OR0A 3RKHA 1EGCA 1QDBA 2JIFA 4IV6A 3TORA 1SIRA 2R0MA 2YYLA 1SIQA 1FS9A 4M9AA 1GU6A 3II9A 1UDYA 3P4TA 5K3GA 3X0XA 2IX5A 3LGQA 1EGDA 3SCEA 2E81A 4NXLA 3GQTA 3BNJA 3SF6A 4Q17A 2C0UA 3R7KA 3LG1A 4N5FA 4XVXA 3UU9A 2YYIA 2CX9A 3MKHA 3EONA 2YYGA 4Q0TA 3D1IA 2RF7A 3BNFA 2C12A 3MPJA 4G5EA 3TTBA 3MXLA 2WBIA 4U83A 4O5MA 3SXQA 4Q4UA 2YYJA 5K3HA 3MDDA 4Q5CA 3X0YA 4W9UA 2EBAA 2JBRA 3AFEA 3PFDA 3L1TA 1T9GA 3MMOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3B96 A;  4ZYJ A;  1OAH A;  2RDZ A;  2FON A;  3GM6 A;  2R0N A;  2UXW A;  3MPI A;  3S7W A;  2PG0 A;  1RX0 A;  4X28 A;  4RM7 A;  3M9V A;  1FS8 A;  2VR0 A;  3UBR A;  4Q1O A;  4X28 C;  3GNC A;  3SWO A;  3OWA A;  2Z1Q A;  3AFF A;  2YYM A;  2A1T A;  4L1F A;  2D29 A;  4OO2 A;  2YYK A;  3BNG A;  1IS2 A;  1R2J A;  2RFQ A;  2REH A;  4L3X A;  2DDH A;  2E80 A;  4L3Y A;  4IRN A;  4KTO A;  3OWM A;  1EGE A;  1UKW A;  2OT4 A;  3F29 A;  1BUC A;  4ZXV A;  4L38 A;  2ZAF A;  5K3I A;  3D9G A;  1U8V A;  4DOY A;  2DVL A;  3FO3 A;  1IVH A;  3EOM A;  3FCJ A;  2JBT A;  4HR3 A;  3NF4 A;  1W07 A;  3D6B A;  3MDE A;  4L3Z A;  5K3J A;  3OIB A;  1FS7 A;  3HWC A;  4WJY A;  4KCF A;  2ZO5 A;  4P13 A;  3D9F A;  3D9D A;  2IX6 A;  2JBS A;  1WS9 A;  4JEK A;  2J7A A;  3D9E A;  2VIG A;  1JQI A;  3BNH A;  4Q5B A;  2OR0 A;  3RKH A;  1EGC A;  1QDB A;  2JIF A;  4IV6 A;  3TOR A;  1SIR A;  2R0M A;  2YYL A;  1SIQ A;  1FS9 A;  4M9A A;  1GU6 A;  3II9 A;  1UDY A;  3P4T A;  5K3G A;  3X0X A;  2IX5 A;  3LGQ A;  1EGD A;  3SCE A;  2E81 A;  4NXL A;  3GQT A;  3BNJ A;  3SF6 A;  4Q17 A;  2C0U A;  3R7K A;  3LG1 A;  4N5F A;  4XVX A;  3UU9 A;  2YYI A;  2CX9 A;  3MKH A;  3EON A;  2YYG A;  4Q0T A;  3D1I A;  2RF7 A;  3BNF A;  2C12 A;  3MPJ A;  4G5E A;  3TTB A;  3MXL A;  2WBI A;  4U83 A;  4O5M A;  3SXQ A;  4Q4U A;  2YYJ A;  5K3H A;  3MDD A;  4Q5C A;  3X0Y A;  4W9U A;  2EBA A;  2JBR A;  3AFE A;  3PFD A;  3L1T A;  1T9G A;  3MMO A; 
#chains in the Genus database with same CATH topology
 3B96 A;  4ZYJ A;  1XFX A;  2BU2 A;  2OJQ A;  2QR4 A;  2ZDX A;  4V26 A;  5M4M A;  5EZ3 A;  1OAH A;  2RDZ A;  3Q23 A;  2FON A;  1Y8N A;  3GM6 A;  2R0N A;  2UXW A;  3MPI A;  2F6L A;  3S7W A;  2PG0 A;  1K93 A;  1JM6 A;  1RX0 A;  4X28 A;  4RM7 A;  3M9V A;  2XS8 A;  1LVC A;  1FS8 A;  2VR0 A;  3UBR A;  4Q1O A;  5J71 A;  4X28 C;  3GNC A;  3SWO A;  3OWA A;  2Z1Q A;  3AFF A;  1XFU A;  2YYM A;  2A1T A;  4G97 A;  4L1F A;  2D29 A;  2CJ6 A;  2XQR B;  4E01 A;  4OO2 A;  2YYK A;  3BNG A;  3C2P A;  1IS2 A;  1R2J A;  2OEX A;  2RFQ A;  2REH A;  2AZE A;  2DDH A;  1Y0V A;  2E80 A;  3KML A;  4IRN A;  4L3X A;  4L3Y A;  3X29 A;  3Q0A A;  1K8T A;  4KTO A;  4JIO A;  2FP1 A;  3OWM A;  1EGE A;  2AO2 A;  3C3L A;  1UKW A;  4F0X A;  2OT4 A;  4AI6 A;  3F29 A;  1K90 A;  3CRK A;  3TZ2 A;  1BUC A;  4KSA A;  4FF4 A;  4ZXV A;  4L38 A;  2Q8I A;  2ZAF A;  4AKG A;  5K3I A;  3D9G A;  2OEV A;  2LFW A;  1U8V A;  1Y8O A;  4DOY A;  2DVL A;  3FO3 A;  3SCE A;  4E00 A;  1IVH A;  3EOM A;  4P79 A;  5BRK A;  3FCJ A;  2JBT A;  4HR3 A;  3NF4 A;  1W07 A;  3D6B A;  3MDE A;  1X90 A;  2BTZ A;  5K3J A;  2FP2 A;  4L3Z A;  1XFZ A;  3OIB A;  4FZ4 A;  1FS7 A;  3HWC A;  1GKX A;  4WJY A;  4KCF A;  4KS9 A;  5M4K A;  3DJL A;  2ZO5 A;  4P13 A;  1GJV A;  3CE2 A;  3D9F A;  2XS1 A;  3D9D A;  4MPC A;  2BU7 A;  2IX6 A;  2JBS A;  4H81 A;  4MPE A;  4QIC A;  3VAD A;  4E02 A;  1WS9 A;  4JEK A;  2J7A A;  2CJ4 A;  5B5W A;  2YGW A;  3D9E A;  4FF3 A;  2VIG A;  2R05 A;  1JQI A;  3BNH A;  4Q5B A;  4H85 A;  2Q8F A;  3TZ4 A;  2OR0 A;  3RKH A;  1EGC A;  1QDB A;  3N0R A;  2Q8H A;  1XG2 B;  2Q8G A;  2JIF A;  4KSF A;  4IV6 A;  3TOR A;  2R03 A;  1SIR A;  4LQQ B;  2R0M A;  2PNR A;  2YYL A;  4V25 A;  3TZ5 A;  1SIQ A;  3VKG A;  1FS9 A;  4M9A A;  1PK0 A;  4H7Q A;  2VF1 A;  1GU6 A;  2R02 A;  3II9 A;  3U33 A;  1UDY A;  4MP7 A;  1SC5 A;  3P4T A;  1X91 A;  5K3G A;  1R3B A;  3X0X A;  2IX5 A;  1S26 A;  2E0A A;  3LGQ A;  3TZ0 A;  3Q24 A;  1EGD A;  1RJ4 A;  2E81 A;  4NXL A;  3GQT A;  3BNJ A;  3SF6 A;  4HKR A;  2HJN A;  4Q17 A;  5GJV E;  4DZY A;  2EBF X;  5J6A A;  2C0U A;  2PO4 A;  4AKI A;  4HKS A;  3R7K A;  3LG1 A;  3VKH A;  4N5F A;  4XVX A;  4MPN A;  3UU9 A;  2YYI A;  2CX9 A;  4J1V A;  4AKH A;  3MKH A;  5B5V A;  2BU6 A;  3Q22 A;  4MP2 A;  1RJ1 A;  3EON A;  2YYG A;  1XFW A;  4Q0T A;  3D1I A;  1XFY A;  2RF7 A;  4LQS B;  5GJW E;  5B6B A;  3BNF A;  4FF1 A;  2ZKJ A;  1Y8P A;  4FF2 A;  2C12 A;  1GKZ A;  2ZDY A;  2EC5 A;  1X8Z A;  4JIZ A;  3MPJ A;  2EBH X;  5M4P A;  2CJ5 A;  4G5E A;  1SK6 A;  3TTB A;  2GBB A;  3MXL A;  2WBI A;  5M4N A;  4U83 A;  4O5M A;  3CRL A;  1XFV A;  5BRM A;  1RP3 A;  4Q4U A;  2BU8 A;  2BU5 A;  3D2R A;  3SXQ A;  2CJ7 A;  2CJ8 A;  2YYJ A;  5K3H A;  3MDD A;  4Q5C A;  3X0Y A;  4W9U A;  1PI1 A;  2EBA A;  2JBR A;  3AFE A;  3PFD A;  3L1T A;  1T9G A;  3C46 A;  3MMO A; 
#chains in the Genus database with same CATH homology
 3B96 A;  4ZYJ A;  1OAH A;  2RDZ A;  2FON A;  3GM6 A;  2R0N A;  2UXW A;  3MPI A;  3S7W A;  2PG0 A;  1RX0 A;  4X28 A;  4RM7 A;  3M9V A;  1FS8 A;  2VR0 A;  3UBR A;  4Q1O A;  4X28 C;  3GNC A;  3SWO A;  3OWA A;  2Z1Q A;  3AFF A;  2YYM A;  2A1T A;  4L1F A;  2D29 A;  4OO2 A;  2YYK A;  3BNG A;  1IS2 A;  1R2J A;  2RFQ A;  2REH A;  4L3X A;  2DDH A;  2E80 A;  4L3Y A;  4IRN A;  4KTO A;  3OWM A;  1EGE A;  1UKW A;  2OT4 A;  3F29 A;  1BUC A;  4ZXV A;  4L38 A;  2ZAF A;  5K3I A;  3D9G A;  1U8V A;  4DOY A;  2DVL A;  3FO3 A;  1IVH A;  3EOM A;  3FCJ A;  2JBT A;  4HR3 A;  3NF4 A;  1W07 A;  3D6B A;  3MDE A;  4L3Z A;  5K3J A;  3OIB A;  1FS7 A;  3HWC A;  4WJY A;  4KCF A;  2ZO5 A;  4P13 A;  3D9F A;  3D9D A;  2IX6 A;  2JBS A;  1WS9 A;  4JEK A;  2J7A A;  3D9E A;  2VIG A;  1JQI A;  3BNH A;  4Q5B A;  2OR0 A;  3RKH A;  1EGC A;  1QDB A;  2JIF A;  4IV6 A;  3TOR A;  1SIR A;  2R0M A;  2YYL A;  1SIQ A;  1FS9 A;  4M9A A;  1GU6 A;  3II9 A;  1UDY A;  3P4T A;  5K3G A;  3X0X A;  2IX5 A;  3LGQ A;  1EGD A;  3SCE A;  2E81 A;  4NXL A;  3GQT A;  3BNJ A;  3SF6 A;  4Q17 A;  2C0U A;  3R7K A;  3LG1 A;  4N5F A;  4XVX A;  3UU9 A;  2YYI A;  2CX9 A;  3MKH A;  3EON A;  2YYG A;  4Q0T A;  3D1I A;  2RF7 A;  3BNF A;  2C12 A;  3MPJ A;  4G5E A;  3TTB A;  3MXL A;  2WBI A;  4U83 A;  4O5M A;  3SXQ A;  4Q4U A;  2YYJ A;  5K3H A;  3MDD A;  4Q5C A;  3X0Y A;  4W9U A;  2EBA A;  2JBR A;  3AFE A;  3PFD A;  3L1T A;  1T9G A;  3MMO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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