2Z3HA

Crystal structure of blasticidin s deaminase (bsd) complexed with deaminohydroxy blasticidin s
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
122
structure length
122
Chain Sequence
LSQEESTLIERATATINSIPISEDYSVASAALSSDGRIFTGVNVYHFTGGPCAELVVLGTAAAAAAGNLTCIVAIGNENRGILSPCGRCRQVLLDLHPGIKAIVKDSDGQPTAVGIRELLPS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Blasticidin-S deaminase
publication title Crystal structures of blasticidin S deaminase (BSD): implications for dynamic properties of catalytic zinc
pubmed doi rcsb
source organism Aspergillus terreus
total genus 32
structure length 122
sequence length 122
chains with identical sequence B, C, D
ec nomenclature ec 3.5.4.23: Blasticidin-S deaminase.
pdb deposition date 2007-06-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00383 dCMP_cyt_deam_1 Cytidine and deoxycytidylate deaminase zinc-binding region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.140.10 Alpha Beta 3-Layer(aba) Sandwich Cytidine Deaminase; domain 2 Cytidine Deaminase, domain 2 2z3hA00
4OCMA 4LC5A 3G8QA 3ZPCA 2OG4A 3RZVA 1WN6A 4OCNB 5M59B 4OCLB 4K1RA 4E0QA 1ALNA 4MSQA 1YSBA 4HRWA 3ZEFB 2B3ZA 1MQ0A 1P6OA 3DMOA 1UX0A 4P9DA 1JTKA 4WIFA 4D10F 2Z3GA 2B3JA 1UAQA 4G3MA 3OCQA 1ZABA 2D30A 4NQLA 3E1UA 2KKSA 4O8YA 3ZPGA 4OWPA 3SBGA 4MSDA 1Z3AA 4QFTA 1VQ2A 1WN5A 4ZFRA 4F7OA 4WIGA 2G6VA 4PQTA 2G84A 4ILGC 3B8FA 4LD4A 4I43B 3DH1A 4LCOA 3RZUA 1AF2A 4MSJA 4O8XA 4ZFTA 2O96A 2A8NA 5CW6A 3R2NA 1RB7A 1TIYA 2PW9A 4OCMB 4JXEA 4ZD5A 4LCPA 2QLCA 2O7PA 4OCNA 1OI0A 4P9CA 3IJFX 2NYTA 3MPZA 4MS7A 1R5XA 4EG2A 2O95A 2HXVA 2OBCA 4HRQA 5GAOA 2P8RA 4P9EA 1UX1A 2Z3HA 4BGDC 5DCAJ 2HVWA 4O8XB 4KITC 1WWRA 1WKQA 2P87A 2W4LA 2Z3JA 2ZNRA 1UWZA 1OX7A 4ZD4A 2FR5A 1CTTA 3EX8A 2D5NA 2Z3IA 1R5TA 4LD2A 2HVVA 4LCNA 2RPZA 2O3KA 4O8YB 4OCLA 1YSDA 4OWPB 1CTUA 4MSMA 5C2OA 2NX8A 2FR6A 2ZNVA 2KCQA 3OJ6A 4F3WA 5M52C
chains in the Genus database with same CATH superfamily
4OCMA 4LC5A 1G8MA 3G8QA 2B1GA 3ZPCA 2OG4A 3RZVA 2B1IA 1WN6A 4OCNB 5M59B 3BH1A 4OCLB 4K1RA 4E0QA 1ALNA 4J6EA 4MSQA 1YSBA 4HRWA 3ZEFB 2B3ZA 1MQ0A 1P6OA 1VK9A 3DMOA 1UX0A 4P9DA 1JTKA 1M9NA 4WIFA 4D10F 2Z3GA 2B3JA 1UAQA 4G3MA 3OCQA 2IU3A 1ZABA 2D30A 4NQLA 1OZ0A 3E1UA 2KKSA 4O8YA 3ZPGA 4OWPA 3SBGA 4MSDA 1Z3AA 4QFTA 1PL0A 1VQ2A 1WN5A 2IU0A 4ZFRA 1ZCZA 4F7OA 4WIGA 2G6VA 4PQTA 2G84A 4ILGC 3B8FA 4LD4A 4I43B 3DH1A 4LCOA 3RZUA 1AF2A 4MSJA 4O8XA 4ZFTA 2O96A 1THZA 2A8NA 5CW6A 3R2NA 1RB7A 1TIYA 2PW9A 4OCMB 4JXEA 4ZD5A 4LCPA 2QLCA 2O7PA 4OCNA 4EHIA 1OI0A 4P9CA 3IJFX 2NYTA 3MPZA 4MS7A 1R5XA 4EG2A 4A1OA 1P4RA 2O95A 2HXVA 2OBCA 4HRQA 5GAOA 2P8RA 4P9EA 1UX1A 2Z3HA 4BGDC 3ZZMA 5DCAJ 2HVWA 4O8XB 1WWRA 2P87A 1WKQA 2W4LA 2Z3JA 2ZNRA 4KITC 1UWZA 1OX7A 1PKXA 4ZD4A 2FR5A 4GGMX 1CTTA 3EX8A 2D5NA 2Z3IA 1R5TA 4LD2A 2HVVA 4LCNA 2RPZA 2O3KA 4O8YB 4OCLA 1YSDA 4OWPB 1CTUA 4MSMA 3VX8A 5C2OA 2NX8A 2FR6A 2ZNVA 2KCQA 3OJ6A 4F3WA 5M52C
chains in the Genus database with same CATH topology
4OCMA 4LC5A 3G8QA 3ZPCA 2OG4A 3RZVA 1WN6A 4OCNB 5M59B 4OCLB 4K1RA 4E0QA 1ALNA 4MSQA 1YSBA 4HRWA 3ZEFB 2B3ZA 1MQ0A 1P6OA 3DMOA 1UX0A 4P9DA 1JTKA 4WIFA 4D10F 2Z3GA 2B3JA 1UAQA 4G3MA 3OCQA 1ZABA 2D30A 4NQLA 3E1UA 2KKSA 4O8YA 3ZPGA 4OWPA 3SBGA 4MSDA 1Z3AA 4QFTA 1VQ2A 1WN5A 4ZFRA 4F7OA 4WIGA 2G6VA 4PQTA 2G84A 4ILGC 3B8FA 4LD4A 4I43B 3DH1A 4LCOA 3RZUA 1AF2A 4MSJA 4O8XA 4ZFTA 2O96A 2A8NA 5CW6A 3R2NA 1RB7A 1TIYA 2PW9A 4OCMB 4JXEA 4ZD5A 4LCPA 2QLCA 2O7PA 4OCNA 1OI0A 4P9CA 3IJFX 2NYTA 3MPZA 4MS7A 1R5XA 4EG2A 2O95A 2HXVA 2OBCA 4HRQA 5GAOA 2P8RA 4P9EA 1UX1A 2Z3HA 4BGDC 5DCAJ 2HVWA 4O8XB 4KITC 1WWRA 1WKQA 2P87A 2W4LA 2Z3JA 2ZNRA 1UWZA 1OX7A 4ZD4A 2FR5A 1CTTA 3EX8A 2D5NA 2Z3IA 1R5TA 4LD2A 2HVVA 4LCNA 2RPZA 2O3KA 4O8YB 4OCLA 1YSDA 4OWPB 1CTUA 4MSMA 5C2OA 2NX8A 2FR6A 2ZNVA 2KCQA 3OJ6A 4F3WA 5M52C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OCM A;  4LC5 A;  3G8Q A;  3ZPC A;  2OG4 A;  3RZV A;  1WN6 A;  4OCN B;  5M59 B;  4OCL B;  4K1R A;  4E0Q A;  1ALN A;  4MSQ A;  1YSB A;  4HRW A;  3ZEF B;  2B3Z A;  1MQ0 A;  1P6O A;  3DMO A;  1UX0 A;  4P9D A;  1JTK A;  4WIF A;  4D10 F;  2Z3G A;  2B3J A;  1UAQ A;  4G3M A;  3OCQ A;  1ZAB A;  2D30 A;  4NQL A;  3E1U A;  2KKS A;  4O8Y A;  3ZPG A;  4OWP A;  3SBG A;  4MSD A;  1Z3A A;  4QFT A;  1VQ2 A;  1WN5 A;  4ZFR A;  4F7O A;  4WIG A;  2G6V A;  4PQT A;  2G84 A;  4ILG C;  3B8F A;  4LD4 A;  4I43 B;  3DH1 A;  4LCO A;  3RZU A;  1AF2 A;  4MSJ A;  4O8X A;  4ZFT A;  2O96 A;  2A8N A;  5CW6 A;  3R2N A;  1RB7 A;  1TIY A;  2PW9 A;  4OCM B;  4JXE A;  4ZD5 A;  4LCP A;  2QLC A;  2O7P A;  4OCN A;  1OI0 A;  4P9C A;  3IJF X;  2NYT A;  3MPZ A;  4MS7 A;  1R5X A;  4EG2 A;  2O95 A;  2HXV A;  2OBC A;  4HRQ A;  5GAO A;  2P8R A;  4P9E A;  1UX1 A;  2Z3H A;  4BGD C;  5DCA J;  2HVW A;  4O8X B;  4KIT C;  1WWR A;  1WKQ A;  2P87 A;  2W4L A;  2Z3J A;  2ZNR A;  1UWZ A;  1OX7 A;  4ZD4 A;  2FR5 A;  1CTT A;  3EX8 A;  2D5N A;  2Z3I A;  1R5T A;  4LD2 A;  2HVV A;  4LCN A;  2RPZ A;  2O3K A;  4O8Y B;  4OCL A;  1YSD A;  4OWP B;  1CTU A;  4MSM A;  5C2O A;  2NX8 A;  2FR6 A;  2ZNV A;  2KCQ A;  3OJ6 A;  4F3W A;  5M52 C; 
#chains in the Genus database with same CATH topology
 4OCM A;  4LC5 A;  1G8M A;  3G8Q A;  2B1G A;  3ZPC A;  2OG4 A;  3RZV A;  2B1I A;  1WN6 A;  4OCN B;  5M59 B;  3BH1 A;  4OCL B;  4K1R A;  4E0Q A;  1ALN A;  4J6E A;  4MSQ A;  1YSB A;  4HRW A;  3ZEF B;  2B3Z A;  1MQ0 A;  1P6O A;  1VK9 A;  3DMO A;  1UX0 A;  4P9D A;  1JTK A;  1M9N A;  4WIF A;  4D10 F;  2Z3G A;  2B3J A;  1UAQ A;  4G3M A;  3OCQ A;  2IU3 A;  1ZAB A;  2D30 A;  4NQL A;  1OZ0 A;  3E1U A;  2KKS A;  4O8Y A;  3ZPG A;  4OWP A;  3SBG A;  4MSD A;  1Z3A A;  4QFT A;  1PL0 A;  1VQ2 A;  1WN5 A;  2IU0 A;  4ZFR A;  1ZCZ A;  4F7O A;  4WIG A;  2G6V A;  4PQT A;  2G84 A;  4ILG C;  3B8F A;  4LD4 A;  4I43 B;  3DH1 A;  4LCO A;  3RZU A;  1AF2 A;  4MSJ A;  4O8X A;  4ZFT A;  2O96 A;  1THZ A;  2A8N A;  5CW6 A;  3R2N A;  1RB7 A;  1TIY A;  2PW9 A;  4OCM B;  4JXE A;  4ZD5 A;  4LCP A;  2QLC A;  2O7P A;  4OCN A;  4EHI A;  1OI0 A;  4P9C A;  3IJF X;  2NYT A;  3MPZ A;  4MS7 A;  1R5X A;  4EG2 A;  4A1O A;  1P4R A;  2O95 A;  2HXV A;  2OBC A;  4HRQ A;  5GAO A;  2P8R A;  4P9E A;  1UX1 A;  2Z3H A;  4BGD C;  3ZZM A;  5DCA J;  2HVW A;  4O8X B;  1WWR A;  2P87 A;  1WKQ A;  2W4L A;  2Z3J A;  2ZNR A;  4KIT C;  1UWZ A;  1OX7 A;  1PKX A;  4ZD4 A;  2FR5 A;  4GGM X;  1CTT A;  3EX8 A;  2D5N A;  2Z3I A;  1R5T A;  4LD2 A;  2HVV A;  4LCN A;  2RPZ A;  2O3K A;  4O8Y B;  4OCL A;  1YSD A;  4OWP B;  1CTU A;  4MSM A;  3VX8 A;  5C2O A;  2NX8 A;  2FR6 A;  2ZNV A;  2KCQ A;  3OJ6 A;  4F3W A;  5M52 C; 
#chains in the Genus database with same CATH homology
 4OCM A;  4LC5 A;  3G8Q A;  3ZPC A;  2OG4 A;  3RZV A;  1WN6 A;  4OCN B;  5M59 B;  4OCL B;  4K1R A;  4E0Q A;  1ALN A;  4MSQ A;  1YSB A;  4HRW A;  3ZEF B;  2B3Z A;  1MQ0 A;  1P6O A;  3DMO A;  1UX0 A;  4P9D A;  1JTK A;  4WIF A;  4D10 F;  2Z3G A;  2B3J A;  1UAQ A;  4G3M A;  3OCQ A;  1ZAB A;  2D30 A;  4NQL A;  3E1U A;  2KKS A;  4O8Y A;  3ZPG A;  4OWP A;  3SBG A;  4MSD A;  1Z3A A;  4QFT A;  1VQ2 A;  1WN5 A;  4ZFR A;  4F7O A;  4WIG A;  2G6V A;  4PQT A;  2G84 A;  4ILG C;  3B8F A;  4LD4 A;  4I43 B;  3DH1 A;  4LCO A;  3RZU A;  1AF2 A;  4MSJ A;  4O8X A;  4ZFT A;  2O96 A;  2A8N A;  5CW6 A;  3R2N A;  1RB7 A;  1TIY A;  2PW9 A;  4OCM B;  4JXE A;  4ZD5 A;  4LCP A;  2QLC A;  2O7P A;  4OCN A;  1OI0 A;  4P9C A;  3IJF X;  2NYT A;  3MPZ A;  4MS7 A;  1R5X A;  4EG2 A;  2O95 A;  2HXV A;  2OBC A;  4HRQ A;  5GAO A;  2P8R A;  4P9E A;  1UX1 A;  2Z3H A;  4BGD C;  5DCA J;  2HVW A;  4O8X B;  4KIT C;  1WWR A;  1WKQ A;  2P87 A;  2W4L A;  2Z3J A;  2ZNR A;  1UWZ A;  1OX7 A;  4ZD4 A;  2FR5 A;  1CTT A;  3EX8 A;  2D5N A;  2Z3I A;  1R5T A;  4LD2 A;  2HVV A;  4LCN A;  2RPZ A;  2O3K A;  4O8Y B;  4OCL A;  1YSD A;  4OWP B;  1CTU A;  4MSM A;  5C2O A;  2NX8 A;  2FR6 A;  2ZNV A;  2KCQ A;  3OJ6 A;  4F3W A;  5M52 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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