2Z8KA

Crystal structure of escherichia coli gamma-glutamyltranspeptidase in complex with acivicin
Total Genus 103
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
103
sequence length
350
structure length
350
Chain Sequence
EDVFHPVRAKQGMVASVDATATQVGVDILKEGGNAVDAAVAVGYALAVTHPQAGNLGGGGFMLIRSKNGNTTAIDFREMAPAKATRDMFLDDQGNPDSKKSLTSHLASGTPGTVAGFSLALDKYGTMPLNKVVQPAFKLARDGFIVNDALADDLKTYGSEVLPNHENSKAIFWKEGEPLKKGDTLVQANLAKSLEMIAENGPDEFYKGTIAEQIAQEMQKNGGLITKEDLAAYKAVERTPISGDYRGYQVYSMPPPSSGGIHIVQILNILENFDMKKYGFGSADAMQIMAEAEKYAYADRSEYLGDPDFVKVPWQALTNKAYAKSIADQIDINKAKPSSEIRPGKLAPYE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Gamma-glutamyltranspeptidase
publication title Crystal structures of Escherichia coli gamma-glutamyltranspeptidase in complex with azaserine and acivicin: novel mechanistic implication for inhibition by glutamine antagonists
pubmed doi rcsb
source organism Escherichia coli
total genus 103
structure length 350
sequence length 350
chains with identical sequence C
ec nomenclature ec 2.3.2.2: Gamma-glutamyltransferase.
pdb deposition date 2007-09-05
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.130 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 2z8kA02
2Z8IA 3FNMA 2Z8KA 2DBWA 2DBUA 2Z8JA 4ZCGA 2DBXA 4OTTA 3WHSA 4GG2A 3A75A 2QMCA 4ZC6A 2E0YA 5B5TA 2E0XA 2V36A 4GDXA 4Z9OA 2NQOA 4ZBKA 2DG5A 2QM6A 3WHQA 5BPKA 3WHRA 4OTUA
chains in the Genus database with same CATH superfamily
2XW0A 4L8UA 2Z8KA 3LU8A 1H9ZA 2ROHA 2BXPA 5IIHA 3B9MA 4L9QA 4JK4A 4DM0A 2Z8JA 1MUSA 1GNIA 4TQ1A 4ZCGA 4TQ0A 4F5SA 1JNBA 1MA9A 1BKEA 2XVVA 4BKEA 3GQUA 3M99C 1E7BA 2BXKA 3TDLA 2BXQA 4PO0A 4ZC6A 4NAWB 4J2VA 3GA9L 3V03A 5FUOA 3NVKA 4G04A 4WA6B 4D7XA 2CKXA 2V36A 4ZBKA 2LXTA 1E7FA 1VFIA 2DG5A 2KWFA 2QM6A 4M70B 3WHQA 1MIVA 2KBZA 4LB9A 2I30A 2BXNA 3ECPA 4ZBRA 3H37A 2OZBB 4K2CA 4S1YA 3LU7A 4Z69A 1UORA 2YDFA 3CX9A 2K0NA 5DBYA 1KDXA 2DBXA 4W4UB 3WHSA 1HK5A 1TXUA 1LNSA 4GDKB 3KJLA 4F5VA 1O9XA 5GIOA 4C31B 2QMCA 5GIPA 4BY9C 3MHHB 2BXLA 2XW1A 3VQIA 2EFEA 2VDBA 1HK4A 2LQHA 3LU6A 5IIUA 1H5WA 4N0UD 1J7EA 5IIXA 3FWBC 3PLAA 4IW2A 2E0YA 1E78A 2BXEA 3NVIA 5IJFA 2BXHA 1KXPD 1HK1A 4GDLB 2OT3A 2BXFA 1E7AA 1NT2B 4LUHA 3WHRA 5ID7A 5GHKA 1HK2A 2Z8IA 2VUEA 3FNMA 2BXMA 1J78A 4F5TA 1FOUA 2BX8A 2DYOA 2DBWA 5HOZA 3V09A 2DBUA 3UIVA 3JQZA 3NVMA 4OTTA 1LOTA 4OT2A 2XVWA 2I2ZA 4EMXA 4LB2A 3FWCC 4GG2A 2VUFA 3A75A 2BXGA 1BJ5A 2AGHB 5D7GA 4E99A 3ICXA 2BXCA 3JRYA 4ZBQA 2BXBA 3H3AA 4FIPB 5IJ5A 4DHXB 3W1SA 2EFHA 5B5TA 3BPJA 2LXSA 2E0XA 4LUFA 4Z9OA 2NQOA 1AO6A 1BM0A 4FJCB 4LA0A 4IW1A 1KW2A 3B9LA 2BXIA 2BXDA 2JUHA 1N5UA 4OTUA 1HK3A 3SIVB 1GNJA 2EFDA 4HGMB 2XSIA 2XVQA 4HGKA 4OR0A 1E7HA 2QHBA 4F5UA 2BXAA 2XMOA 2BXOA 4L9KA 3NMUA 2GUTA 1IJGA 4G01A 1MM8A 5IFOA 3SQJA 4I9OA 2AJEA 4MBEC 3KIKA 3G9KD 1MIWA 4N0FD 1TF0A 5IJEA 1HA2A 1E7GA 2DYMA 2LOQA 3GQXA 5GINA 4FK5B 1E7CA 1E7EA 4G03A 3V08A 1MUHA 3SIUB 5ID9A 5DQFA 1SB0A 4GDXA 1MIYA 1E7IA 4N3ZA 2XVUA 2LQIA 3A73A 2NNWA 1VZSA 5BPKA 4K71A 4ZUXV 3MHSB 2EFCA
chains in the Genus database with same CATH topology
2XW0A 4L8UA 2Z8KA 3LU8A 1H9ZA 2ROHA 2BXPA 5IIHA 3B9MA 4L9QA 4JK4A 2Z8JA 1GNIA 4TQ1A 4ZCGA 4TQ0A 4F5SA 1JNBA 1MA9A 1BKEA 2XVVA 4BKEA 3GQUA 3M99C 1E7BA 2BXKA 3TDLA 2BXQA 4PO0A 4ZC6A 4NAWB 4J2VA 3GA9L 3V03A 5FUOA 3NVKA 4G04A 4WA6B 2CKXA 2V36A 4ZBKA 1E7FA 1VFIA 2DG5A 2QM6A 4M70B 3WHQA 1MIVA 2KBZA 4LB9A 2I30A 2BXNA 4ZBRA 3H37A 2OZBB 4K2CA 4S1YA 3LU7A 4Z69A 1UORA 2YDFA 3CX9A 5DBYA 2DBXA 4W4UB 3WHSA 1HK5A 1TXUA 1LNSA 4GDKB 3KJLA 4F5VA 1O9XA 5GIOA 4C31B 2QMCA 5GIPA 4BY9C 3MHHB 2BXLA 2XW1A 3VQIA 2EFEA 2VDBA 1HK4A 3LU6A 5IIUA 1H5WA 4N0UD 1J7EA 5IIXA 3FWBC 3PLAA 4IW2A 2E0YA 1E78A 2BXEA 3NVIA 5IJFA 2BXHA 1KXPD 1HK1A 4GDLB 2OT3A 2BXFA 1E7AA 1NT2B 4LUHA 3WHRA 5ID7A 5GHKA 1HK2A 2Z8IA 2VUEA 3FNMA 2BXMA 1J78A 4F5TA 1FOUA 2BX8A 2DYOA 2DBWA 5HOZA 3V09A 2DBUA 3UIVA 3JQZA 3NVMA 4OTTA 1LOTA 4OT2A 2XVWA 2I2ZA 4EMXA 4LB2A 3FWCC 4GG2A 2VUFA 3A75A 2BXGA 1BJ5A 5D7GA 4E99A 3ICXA 2BXCA 3JRYA 4ZBQA 2BXBA 3H3AA 4FIPB 5IJ5A 4DHXB 3W1SA 2EFHA 5B5TA 2E0XA 4LUFA 4Z9OA 2NQOA 1AO6A 1BM0A 4FJCB 4LA0A 4IW1A 1KW2A 3B9LA 2BXIA 2BXDA 2JUHA 1N5UA 4OTUA 1HK3A 3SIVB 1GNJA 2EFDA 4HGMB 2XSIA 2XVQA 4HGKA 4OR0A 1E7HA 2QHBA 4F5UA 2BXAA 2XMOA 2BXOA 4L9KA 3NMUA 1IJGA 4G01A 5IFOA 3SQJA 4MBEC 2AJEA 3KIKA 3G9KD 1MIWA 4N0FD 1TF0A 5IJEA 1HA2A 1E7GA 2DYMA 2LOQA 3GQXA 5GINA 4FK5B 1E7CA 1E7EA 4G03A 3V08A 3SIUB 5ID9A 5DQFA 4GDXA 1MIYA 1E7IA 4N3ZA 2XVUA 3A73A 2NNWA 1VZSA 5BPKA 4K71A 4ZUXV 3MHSB 2EFCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Z8I A;  3FNM A;  2Z8K A;  2DBW A;  2DBU A;  2Z8J A;  4ZCG A;  2DBX A;  4OTT A;  3WHS A;  4GG2 A;  3A75 A;  2QMC A;  4ZC6 A;  2E0Y A;  5B5T A;  2E0X A;  2V36 A;  4GDX A;  4Z9O A;  2NQO A;  4ZBK A;  2DG5 A;  2QM6 A;  3WHQ A;  5BPK A;  3WHR A;  4OTU A; 
#chains in the Genus database with same CATH topology
 2XW0 A;  4L8U A;  2Z8K A;  3LU8 A;  1H9Z A;  2ROH A;  2BXP A;  5IIH A;  3B9M A;  4L9Q A;  4JK4 A;  4DM0 A;  2Z8J A;  1MUS A;  1GNI A;  4TQ1 A;  4ZCG A;  4TQ0 A;  4F5S A;  1JNB A;  1MA9 A;  1BKE A;  2XVV A;  4BKE A;  3GQU A;  3M99 C;  1E7B A;  2BXK A;  3TDL A;  2BXQ A;  4PO0 A;  4ZC6 A;  4NAW B;  4J2V A;  3GA9 L;  3V03 A;  5FUO A;  3NVK A;  4G04 A;  4WA6 B;  4D7X A;  2CKX A;  2V36 A;  4ZBK A;  2LXT A;  1E7F A;  1VFI A;  2DG5 A;  2KWF A;  2QM6 A;  4M70 B;  3WHQ A;  1MIV A;  2KBZ A;  4LB9 A;  2I30 A;  2BXN A;  3ECP A;  4ZBR A;  3H37 A;  2OZB B;  4K2C A;  4S1Y A;  3LU7 A;  4Z69 A;  1UOR A;  2YDF A;  3CX9 A;  2K0N A;  5DBY A;  1KDX A;  2DBX A;  4W4U B;  3WHS A;  1HK5 A;  1TXU A;  1LNS A;  4GDK B;  3KJL A;  4F5V A;  1O9X A;  5GIO A;  4C31 B;  2QMC A;  5GIP A;  4BY9 C;  3MHH B;  2BXL A;  2XW1 A;  3VQI A;  2EFE A;  2VDB A;  1HK4 A;  2LQH A;  3LU6 A;  5IIU A;  1H5W A;  4N0U D;  1J7E A;  5IIX A;  3FWB C;  3PLA A;  4IW2 A;  2E0Y A;  1E78 A;  2BXE A;  3NVI A;  5IJF A;  2BXH A;  1KXP D;  1HK1 A;  4GDL B;  2OT3 A;  2BXF A;  1E7A A;  1NT2 B;  4LUH A;  3WHR A;  5ID7 A;  5GHK A;  1HK2 A;  2Z8I A;  2VUE A;  3FNM A;  2BXM A;  1J78 A;  4F5T A;  1FOU A;  2BX8 A;  2DYO A;  2DBW A;  5HOZ A;  3V09 A;  2DBU A;  3UIV A;  3JQZ A;  3NVM A;  4OTT A;  1LOT A;  4OT2 A;  2XVW A;  2I2Z A;  4EMX A;  4LB2 A;  3FWC C;  4GG2 A;  2VUF A;  3A75 A;  2BXG A;  1BJ5 A;  2AGH B;  5D7G A;  4E99 A;  3ICX A;  2BXC A;  3JRY A;  4ZBQ A;  2BXB A;  3H3A A;  4FIP B;  5IJ5 A;  4DHX B;  3W1S A;  2EFH A;  5B5T A;  3BPJ A;  2LXS A;  2E0X A;  4LUF A;  4Z9O A;  2NQO A;  1AO6 A;  1BM0 A;  4FJC B;  4LA0 A;  4IW1 A;  1KW2 A;  3B9L A;  2BXI A;  2BXD A;  2JUH A;  1N5U A;  4OTU A;  1HK3 A;  3SIV B;  1GNJ A;  2EFD A;  4HGM B;  2XSI A;  2XVQ A;  4HGK A;  4OR0 A;  1E7H A;  2QHB A;  4F5U A;  2BXA A;  2XMO A;  2BXO A;  4L9K A;  3NMU A;  2GUT A;  1IJG A;  4G01 A;  1MM8 A;  5IFO A;  3SQJ A;  4I9O A;  2AJE A;  4MBE C;  3KIK A;  3G9K D;  1MIW A;  4N0F D;  1TF0 A;  5IJE A;  1HA2 A;  1E7G A;  2DYM A;  2LOQ A;  3GQX A;  5GIN A;  4FK5 B;  1E7C A;  1E7E A;  4G03 A;  3V08 A;  1MUH A;  3SIU B;  5ID9 A;  5DQF A;  1SB0 A;  4GDX A;  1MIY A;  1E7I A;  4N3Z A;  2XVU A;  2LQI A;  3A73 A;  2NNW A;  1VZS A;  5BPK A;  4K71 A;  4ZUX V;  3MHS B;  2EFC A; 
#chains in the Genus database with same CATH homology
 2XW0 A;  4L8U A;  2Z8K A;  3LU8 A;  1H9Z A;  2ROH A;  2BXP A;  5IIH A;  3B9M A;  4L9Q A;  4JK4 A;  2Z8J A;  1GNI A;  4TQ1 A;  4ZCG A;  4TQ0 A;  4F5S A;  1JNB A;  1MA9 A;  1BKE A;  2XVV A;  4BKE A;  3GQU A;  3M99 C;  1E7B A;  2BXK A;  3TDL A;  2BXQ A;  4PO0 A;  4ZC6 A;  4NAW B;  4J2V A;  3GA9 L;  3V03 A;  5FUO A;  3NVK A;  4G04 A;  4WA6 B;  2CKX A;  2V36 A;  4ZBK A;  1E7F A;  1VFI A;  2DG5 A;  2QM6 A;  4M70 B;  3WHQ A;  1MIV A;  2KBZ A;  4LB9 A;  2I30 A;  2BXN A;  4ZBR A;  3H37 A;  2OZB B;  4K2C A;  4S1Y A;  3LU7 A;  4Z69 A;  1UOR A;  2YDF A;  3CX9 A;  5DBY A;  2DBX A;  4W4U B;  3WHS A;  1HK5 A;  1TXU A;  1LNS A;  4GDK B;  3KJL A;  4F5V A;  1O9X A;  5GIO A;  4C31 B;  2QMC A;  5GIP A;  4BY9 C;  3MHH B;  2BXL A;  2XW1 A;  3VQI A;  2EFE A;  2VDB A;  1HK4 A;  3LU6 A;  5IIU A;  1H5W A;  4N0U D;  1J7E A;  5IIX A;  3FWB C;  3PLA A;  4IW2 A;  2E0Y A;  1E78 A;  2BXE A;  3NVI A;  5IJF A;  2BXH A;  1KXP D;  1HK1 A;  4GDL B;  2OT3 A;  2BXF A;  1E7A A;  1NT2 B;  4LUH A;  3WHR A;  5ID7 A;  5GHK A;  1HK2 A;  2Z8I A;  2VUE A;  3FNM A;  2BXM A;  1J78 A;  4F5T A;  1FOU A;  2BX8 A;  2DYO A;  2DBW A;  5HOZ A;  3V09 A;  2DBU A;  3UIV A;  3JQZ A;  3NVM A;  4OTT A;  1LOT A;  4OT2 A;  2XVW A;  2I2Z A;  4EMX A;  4LB2 A;  3FWC C;  4GG2 A;  2VUF A;  3A75 A;  2BXG A;  1BJ5 A;  5D7G A;  4E99 A;  3ICX A;  2BXC A;  3JRY A;  4ZBQ A;  2BXB A;  3H3A A;  4FIP B;  5IJ5 A;  4DHX B;  3W1S A;  2EFH A;  5B5T A;  2E0X A;  4LUF A;  4Z9O A;  2NQO A;  1AO6 A;  1BM0 A;  4FJC B;  4LA0 A;  4IW1 A;  1KW2 A;  3B9L A;  2BXI A;  2BXD A;  2JUH A;  1N5U A;  4OTU A;  1HK3 A;  3SIV B;  1GNJ A;  2EFD A;  4HGM B;  2XSI A;  2XVQ A;  4HGK A;  4OR0 A;  1E7H A;  2QHB A;  4F5U A;  2BXA A;  2XMO A;  2BXO A;  4L9K A;  3NMU A;  1IJG A;  4G01 A;  5IFO A;  3SQJ A;  4MBE C;  2AJE A;  3KIK A;  3G9K D;  1MIW A;  4N0F D;  1TF0 A;  5IJE A;  1HA2 A;  1E7G A;  2DYM A;  2LOQ A;  3GQX A;  5GIN A;  4FK5 B;  1E7C A;  1E7E A;  4G03 A;  3V08 A;  3SIU B;  5ID9 A;  5DQF A;  4GDX A;  1MIY A;  1E7I A;  4N3Z A;  2XVU A;  3A73 A;  2NNW A;  1VZS A;  5BPK A;  4K71 A;  4ZUX V;  3MHS B;  2EFC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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