2Z8WA

Structure of an ignar-ama1 complex
Total Genus 84
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
84
sequence length
335
structure length
335
Chain Sequence
NYMGNPWTEYMAKYDIEEVHGSGIRVDLGEDAEVAGTQYRLPSGKCPVFGKGIIIENSNTTFLTPVATGNQYLKDGGFAFPPTEPLMSPMTLDEMRHFYKDNKYVKNLDELTLCSRHAGNMIPDNDKNSNYKYPAVYDDKDKKCHILYIAAQENNGPRYCNKDESKRNSMFCFRPAKDISFQNYTYLSKNVVDNWEKVCPRKNLQNAKFGLWVDGNCEDIPHVNEFPAIDLFECNKLVFELSASDQPKQYEQHLTDYEKIKEGFKNKNASMIKSAFLPTGAFKADRYKSHGKGYNWGNYNTETQKCEIFNVKPTCLINNSSYIATTALSHPIEVE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system
molecule keywords Apical membrane antigen 1
publication title Structure of an IgNAR-AMA1 Complex: Targeting a Conserved Hydrophobic Cleft Broadens Malarial Strain Recognition
pubmed doi rcsb
source organism Plasmodium falciparum
total genus 84
structure length 335
sequence length 335
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-09-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 2z8wA01
2Q8AA 5CT3A 3HMSA 3SRJA 5CSQA 2LL3A 3SRIA 1W8KA 1BHTA 5CS3A 5CS1A 4APMA 4A5TS 3HN4A 3HMTA 1W81A 4R19A 5CT2A 2LL4M 2Q8BA 2HGFA 2QJ4A 1GMNA 5I25A 4UV6A 4IUAA 5EODA 4Z0EA 2K13X 4Z09A 4Z0FA 5CS9A 5CS5A 3ZLEA 3HMRA 2YIPA 1HKYA 1I8NA 4APLA 3ZWZA 5CP9A 4R1BA 4Z0DA 2YIOA 1GP9A 2QJ2A 2J8JA 2X2ZA 2J8LA 1NK1A 3SP8A 2YILA 4R1AA 5EOKA 1GMOA 5CT1A 4DURA 1Z40A 4UAOA 1YXEA 2Z8WA 3MKPA 5COEA 2Z8VA 4R1CA 2Y8RA 2F83A
chains in the Genus database with same CATH superfamily
2Q8AA 5CT3A 3HMSA 3SRJA 5CSQA 2LL3A 3SRIA 4YIVA 1W8KA 1BHTA 5CS3A 5CS1A 4APMA 4A5TS 3HN4A 3HMTA 1W81A 4R19A 5CT2A 2LL4M 2Q8BA 2HGFA 2QJ4A 1GMNA 5I25A 4UV6A 4IUAA 5EODA 4Z0EA 2K13X 4Z09A 4Z0FA 5CS9A 5CS5A 3ZLEA 3HMRA 2YIPA 1HKYA 2KL5A 1I8NA 4APLA 3ZWZA 5CP9A 4R1BA 4Z0DA 2YIOA 4YIZA 1GP9A 2J8JA 2QJ2A 2X2ZA 2J8LA 1NK1A 3SP8A 2YILA 4R1AA 5EOKA 1GMOA 5CT1A 4DURA 1Z40A 4UAOA 1YXEA 2Z8WA 3MKPA 5COEA 2Z8VA 4R1CA 2Y8RA 2F83A
chains in the Genus database with same CATH topology
2Q8AA 5CT3A 3HMSA 3SRJA 5CSQA 2LL3A 3SRIA 4YIVA 1W8KA 1BHTA 5CS3A 5CS1A 4APMA 4A5TS 3HN4A 3HMTA 1W81A 4R19A 5CT2A 2LL4M 2Q8BA 2HGFA 2QJ4A 1GMNA 5I25A 4UV6A 4IUAA 5EODA 4Z0EA 2K13X 4Z09A 4Z0FA 5CS9A 5CS5A 3ZLEA 3HMRA 2YIPA 1HKYA 2KL5A 1I8NA 4APLA 3ZWZA 5CP9A 4R1BA 4Z0DA 2YIOA 4YIZA 1GP9A 2J8JA 2QJ2A 2X2ZA 2J8LA 1NK1A 3SP8A 2YILA 4R1AA 5EOKA 1GMOA 5CT1A 4DURA 1Z40A 4UAOA 1YXEA 2Z8WA 3MKPA 5COEA 2Z8VA 4R1CA 2Y8RA 2F83A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Q8A A;  5CT3 A;  3HMS A;  3SRJ A;  5CSQ A;  2LL3 A;  3SRI A;  1W8K A;  1BHT A;  5CS3 A;  5CS1 A;  4APM A;  4A5T S;  3HN4 A;  3HMT A;  1W81 A;  4R19 A;  5CT2 A;  2LL4 M;  2Q8B A;  2HGF A;  2QJ4 A;  1GMN A;  5I25 A;  4UV6 A;  4IUA A;  5EOD A;  4Z0E A;  2K13 X;  4Z09 A;  4Z0F A;  5CS9 A;  5CS5 A;  3ZLE A;  3HMR A;  2YIP A;  1HKY A;  1I8N A;  4APL A;  3ZWZ A;  5CP9 A;  4R1B A;  4Z0D A;  2YIO A;  1GP9 A;  2QJ2 A;  2J8J A;  2X2Z A;  2J8L A;  1NK1 A;  3SP8 A;  2YIL A;  4R1A A;  5EOK A;  1GMO A;  5CT1 A;  4DUR A;  1Z40 A;  4UAO A;  1YXE A;  2Z8W A;  3MKP A;  5COE A;  2Z8V A;  4R1C A;  2Y8R A;  2F83 A; 
#chains in the Genus database with same CATH topology
 2Q8A A;  5CT3 A;  3HMS A;  3SRJ A;  5CSQ A;  2LL3 A;  3SRI A;  4YIV A;  1W8K A;  1BHT A;  5CS3 A;  5CS1 A;  4APM A;  4A5T S;  3HN4 A;  3HMT A;  1W81 A;  4R19 A;  5CT2 A;  2LL4 M;  2Q8B A;  2HGF A;  2QJ4 A;  1GMN A;  5I25 A;  4UV6 A;  4IUA A;  5EOD A;  4Z0E A;  2K13 X;  4Z09 A;  4Z0F A;  5CS9 A;  5CS5 A;  3ZLE A;  3HMR A;  2YIP A;  1HKY A;  2KL5 A;  1I8N A;  4APL A;  3ZWZ A;  5CP9 A;  4R1B A;  4Z0D A;  2YIO A;  4YIZ A;  1GP9 A;  2J8J A;  2QJ2 A;  2X2Z A;  2J8L A;  1NK1 A;  3SP8 A;  2YIL A;  4R1A A;  5EOK A;  1GMO A;  5CT1 A;  4DUR A;  1Z40 A;  4UAO A;  1YXE A;  2Z8W A;  3MKP A;  5COE A;  2Z8V A;  4R1C A;  2Y8R A;  2F83 A; 
#chains in the Genus database with same CATH homology
 2Q8A A;  5CT3 A;  3HMS A;  3SRJ A;  5CSQ A;  2LL3 A;  3SRI A;  4YIV A;  1W8K A;  1BHT A;  5CS3 A;  5CS1 A;  4APM A;  4A5T S;  3HN4 A;  3HMT A;  1W81 A;  4R19 A;  5CT2 A;  2LL4 M;  2Q8B A;  2HGF A;  2QJ4 A;  1GMN A;  5I25 A;  4UV6 A;  4IUA A;  5EOD A;  4Z0E A;  2K13 X;  4Z09 A;  4Z0F A;  5CS9 A;  5CS5 A;  3ZLE A;  3HMR A;  2YIP A;  1HKY A;  2KL5 A;  1I8N A;  4APL A;  3ZWZ A;  5CP9 A;  4R1B A;  4Z0D A;  2YIO A;  4YIZ A;  1GP9 A;  2J8J A;  2QJ2 A;  2X2Z A;  2J8L A;  1NK1 A;  3SP8 A;  2YIL A;  4R1A A;  5EOK A;  1GMO A;  5CT1 A;  4DUR A;  1Z40 A;  4UAO A;  1YXE A;  2Z8W A;  3MKP A;  5COE A;  2Z8V A;  4R1C A;  2Y8R A;  2F83 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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