2ZHHA

Crystal structure of soxr
Total Genus 36
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
125
structure length
120
Chain Sequence
ALLTPGEVAKRSGVAVSALHFYESKGLITSIRNSGNQRRYKRDVLRYVAIIKIAQRIGIPLATIGEAFGVTLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCIGCGCLSRSDCPLRN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Crystal structure of the [2Fe-2S] oxidative-stress sensor SoxR bound to DNA
pubmed doi rcsb
molecule tags Transcription
source organism Escherichia coli
molecule keywords Redox-sensitive transcriptional activator soxR
total genus 36
structure length 120
sequence length 125
ec nomenclature
pdb deposition date 2008-02-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00376 MerR MerR family regulatory protein
A PF09278 MerR-DNA-bind MerR, DNA binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1660.10 Mainly Alpha Orthogonal Bundle Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 2zhhA00
3Q5PA 3Q3DA 3Q2YA 3D6YA 1Q05A 5D90A 3IAOA 2ZHGA 2JMLA 4WLWA 1EXIA 1Q09A 3GPVA 4R4EA 3Q1MA 4R22B 1R8DA 4WLSA 1Q08A 4J2NA 3UCSA 1R8EA 3Q5RA 3HH0A 3GP4A 2DG6A 3D71A 3D70A 2ZHHA 5D8CA 4R24B 2VZ4A 5E01A 3D6ZA 1Q0AA 3QAOA 5I41B 1Q06A 5I44A 1JBGA 1EXJA 3Q5SA 1Q07A
chains in the Genus database with same CATH superfamily
3Q5PA 3Q3DA 1Y6UA 3Q2YA 3D6YA 2OG0A 1Q05A 1PM6A 5D90A 3IAOA 1LX8A 2IEFA 2ZHGA 2JMLA 4WLWA 3EZ2A 3EZ7A 1EXIA 1Q09A 3GPVA 4R4EA 4DCZA 3EZ6A 3Q1MA 4R22B 1R8DA 4WLSA 1Q08A 4J2NA 4LHFA 3UCSA 1R8EA 2KVVA 3Q5RA 3HH0A 3GP4A 3EZ9A 2DG6A 3EZFA 1RH6A 3D71A 3D70A 2ZHHA 5D8CA 4R24B 2VZ4A 5E01A 3D6ZA 1Q0AA 3QAOA 5I41B 1Q06A 5I44A 1JBGA 1EXJA 3Q5SA 1Q07A
chains in the Genus database with same CATH topology
3Q5PA 3Q3DA 1Y6UA 3Q2YA 3D6YA 2OG0A 1Q05A 1PM6A 5D90A 3IAOA 1LX8A 2IEFA 2ZHGA 2JMLA 4WLWA 3EZ2A 3EZ7A 1EXIA 1Q09A 3GPVA 4R4EA 4DCZA 3EZ6A 3Q1MA 4R22B 1R8DA 4WLSA 1Q08A 4J2NA 4LHFA 3UCSA 1R8EA 2KVVA 3Q5RA 3HH0A 3GP4A 3EZ9A 2DG6A 3EZFA 1RH6A 3D71A 3D70A 2ZHHA 5D8CA 4R24B 2VZ4A 5E01A 3D6ZA 1Q0AA 3QAOA 5I41B 1Q06A 5I44A 1JBGA 1EXJA 3Q5SA 1Q07A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3Q5P A;  3Q3D A;  3Q2Y A;  3D6Y A;  1Q05 A;  5D90 A;  3IAO A;  2ZHG A;  2JML A;  4WLW A;  1EXI A;  1Q09 A;  3GPV A;  4R4E A;  3Q1M A;  4R22 B;  1R8D A;  4WLS A;  1Q08 A;  4J2N A;  3UCS A;  1R8E A;  3Q5R A;  3HH0 A;  3GP4 A;  2DG6 A;  3D71 A;  3D70 A;  2ZHH A;  5D8C A;  4R24 B;  2VZ4 A;  5E01 A;  3D6Z A;  1Q0A A;  3QAO A;  5I41 B;  1Q06 A;  5I44 A;  1JBG A;  1EXJ A;  3Q5S A;  1Q07 A; 
#chains in the Genus database with same CATH topology
 3Q5P A;  3Q3D A;  1Y6U A;  3Q2Y A;  3D6Y A;  2OG0 A;  1Q05 A;  1PM6 A;  5D90 A;  3IAO A;  1LX8 A;  2IEF A;  2ZHG A;  2JML A;  4WLW A;  3EZ2 A;  3EZ7 A;  1EXI A;  1Q09 A;  3GPV A;  4R4E A;  4DCZ A;  3EZ6 A;  3Q1M A;  4R22 B;  1R8D A;  4WLS A;  1Q08 A;  4J2N A;  4LHF A;  3UCS A;  1R8E A;  2KVV A;  3Q5R A;  3HH0 A;  3GP4 A;  3EZ9 A;  2DG6 A;  3EZF A;  1RH6 A;  3D71 A;  3D70 A;  2ZHH A;  5D8C A;  4R24 B;  2VZ4 A;  5E01 A;  3D6Z A;  1Q0A A;  3QAO A;  5I41 B;  1Q06 A;  5I44 A;  1JBG A;  1EXJ A;  3Q5S A;  1Q07 A; 
#chains in the Genus database with same CATH homology
 3Q5P A;  3Q3D A;  1Y6U A;  3Q2Y A;  3D6Y A;  2OG0 A;  1Q05 A;  1PM6 A;  5D90 A;  3IAO A;  1LX8 A;  2IEF A;  2ZHG A;  2JML A;  4WLW A;  3EZ2 A;  3EZ7 A;  1EXI A;  1Q09 A;  3GPV A;  4R4E A;  4DCZ A;  3EZ6 A;  3Q1M A;  4R22 B;  1R8D A;  4WLS A;  1Q08 A;  4J2N A;  4LHF A;  3UCS A;  1R8E A;  2KVV A;  3Q5R A;  3HH0 A;  3GP4 A;  3EZ9 A;  2DG6 A;  3EZF A;  1RH6 A;  3D71 A;  3D70 A;  2ZHH A;  5D8C A;  4R24 B;  2VZ4 A;  5E01 A;  3D6Z A;  1Q0A A;  3QAO A;  5I41 B;  1Q06 A;  5I44 A;  1JBG A;  1EXJ A;  3Q5S A;  1Q07 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...