2ZJPE

Thiopeptide antibiotic nosiheptide bound to the large ribosomal subunit of deinococcus radiodurans
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
171
structure length
171
Chain Sequence
GKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYNTELTVRQDGDQLLVERPSDAQKHRALHGLTRTLVANAVKGVSDGYTINLELRGVGFRAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQLVGQVAANVRKVRKPDAYHGKGVRFVGEQIALKAGK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome/antibiotic
molecule keywords 50S RIBOSOMAL PROTEIN L33
publication title Translational Regulation Via L11: Molecular Switches on the Ribosome Turned on and Off by Thiostrepton and Micrococcin.
pubmed doi rcsb
total genus 27
structure length 171
sequence length 171
ec nomenclature
pdb deposition date 2008-03-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF00347 Ribosomal_L6 Ribosomal protein L6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 2zjpE02
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 2zjpE01
5GAEG 1YJ9E 5HL7E 1KQSE 3CPWE 1VQPE 3OW2E 3CC7E 1Q81G 1VQ6E 1YJNE 3CMEE 1NJIG 1W2BE 5MLCH 1YI2E 1QVFE 4U67E 1M90G 4WFNE 2OTJE 1VQ7E 1N8RG 4WCEE 3CCSE 4IOCE 1RL6A 3CC4E 1S72E 1YJWE 4UY8G 3G6EE 1Q86G 5AN9B 1VQ4E 1VQ5E 3CCQE 1VQLE 1VQ8E 1JJ2E 4IOAE 1Q7YG 5JVHE 1K9MG 1KD1G 5GAGG 1VQNE 1YHQE 5H1SI 1K73G 3G71E 1YITE 3I56E 1K8AG 3CCEE 4WFAE 3CMAE 3CD6E 1QVGE 3CXCE 3CCJE 3CCUE 4WF9E 3CCLE 5JVGE 3PIPE 4IO9E 1KC8G 1VQME 5GADG 2ZJRE 1VQKE 2OTLE 3DLLE 1VQOE 4WFBE 3CC2E 2CQLA 3J7ZG 2QA4E 3CF5E 3CCVE 1YIJE 1VQ9E 3PIOE 2QEXE 3G4SE 3CCME 1Q82G 3CCRE 5DM6E 5GAHG 2ZJPE 2ZJQE 1M1KG 3I55E 5DM7E
chains in the Genus database with same CATH superfamily
5GAEG 1YJ9E 5HL7E 1KQSE 3CPWE 1VQPE 3OW2E 3CC7E 2G8CO 1Q81G 1VQ6E 3IG9A 3IGEA 2FKJA 1YJNE 3CMEE 1NJIG 1W2BE 2OY1O 2AF5A 5MLCH 1YI2E 1RJLC 1QVFE 4U67E 3EC5A 2OY5O 4WFNE 1M90G 2OTJE 2OL7A 1VQ7E 1N8RG 4WCEE 3CCSE 2I5ZO 2HKDA 4IOCE 1RL6A 3CC4E 1S72E 1YJWE 4UY8G 2FKGA 3G6EE 5AN9B 1Q86G 1VQ4E 1VQ5E 3CCQE 1VQLE 1VQ8E 1FJ1E 1JJ2E 4IOAE 1Q7YG 5JVHE 1K9MG 1KD1G 5GAGG 1VQNE 1YHQE 5H1SI 1K73G 3G71E 2OY7A 2I5VO 1YITE 3I56E 1K8AG 3CKGA 3CCEE 4WFAE 5B10O 3CMAE 2OL8O 3CD6E 1QVGE 5B3MO 2OYBO 3CXCE 3CCJE 3CCUE 4WF9E 3CCLE 5JVGE 3PIPE 1P4PA 2OL6O 4IO9E 1KC8G 1VQME 3AUMO 5GADG 2ZJRE 1VQKE 2OTLE 3DLLE 5B11O 1VQOE 4WFBE 3CC2E 2CQLA 3J7ZG 2QA4E 3CF5E 3CCVE 1YIJE 1VQ9E 3PIOE 2QEXE 3G4SE 3CCME 1Q82G 2PI3O 3CCRE 5DM6E 5B2AO 5GAHG 2ZJPE 2ZJQE 1M1KG 3I55E 5DM7E 2OY8A 1OSPO 3CKFA
chains in the Genus database with same CATH topology
5GAEG 1YJ9E 5HL7E 1KQSE 3CPWE 1VQPE 3OW2E 3CC7E 1Q81G 1VQ6E 1YJNE 3CMEE 1NJIG 1W2BE 5MLCH 1YI2E 1QVFE 4U67E 1M90G 4WFNE 2OTJE 1VQ7E 1N8RG 4WCEE 3CCSE 4IOCE 1RL6A 3CC4E 1S72E 1YJWE 4UY8G 3G6EE 1Q86G 5AN9B 1VQ4E 1VQ5E 3CCQE 1VQLE 1VQ8E 1JJ2E 4IOAE 1Q7YG 5JVHE 1K9MG 1KD1G 5GAGG 1VQNE 1YHQE 5H1SI 1K73G 3G71E 1YITE 3I56E 1K8AG 3CCEE 4WFAE 3CMAE 3CD6E 1QVGE 3CXCE 3CCJE 3CCUE 4WF9E 3CCLE 5JVGE 3PIPE 4IO9E 1KC8G 1VQME 5GADG 2ZJRE 1VQKE 2OTLE 3DLLE 1VQOE 4WFBE 3CC2E 2CQLA 3J7ZG 2QA4E 3CF5E 3CCVE 1YIJE 1VQ9E 3PIOE 2QEXE 3G4SE 3CCME 1Q82G 3CCRE 5DM6E 5GAHG 2ZJPE 2ZJQE 1M1KG 3I55E 5DM7E
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5GAE G;  1YJ9 E;  5HL7 E;  1KQS E;  3CPW E;  1VQP E;  3OW2 E;  3CC7 E;  1Q81 G;  1VQ6 E;  1YJN E;  3CME E;  1NJI G;  1W2B E;  5MLC H;  1YI2 E;  1QVF E;  4U67 E;  1M90 G;  4WFN E;  2OTJ E;  1VQ7 E;  1N8R G;  4WCE E;  3CCS E;  4IOC E;  1RL6 A;  3CC4 E;  1S72 E;  1YJW E;  4UY8 G;  3G6E E;  1Q86 G;  5AN9 B;  1VQ4 E;  1VQ5 E;  3CCQ E;  1VQL E;  1VQ8 E;  1JJ2 E;  4IOA E;  1Q7Y G;  5JVH E;  1K9M G;  1KD1 G;  5GAG G;  1VQN E;  1YHQ E;  5H1S I;  1K73 G;  3G71 E;  1YIT E;  3I56 E;  1K8A G;  3CCE E;  4WFA E;  3CMA E;  3CD6 E;  1QVG E;  3CXC E;  3CCJ E;  3CCU E;  4WF9 E;  3CCL E;  5JVG E;  3PIP E;  4IO9 E;  1KC8 G;  1VQM E;  5GAD G;  2ZJR E;  1VQK E;  2OTL E;  3DLL E;  1VQO E;  4WFB E;  3CC2 E;  2CQL A;  3J7Z G;  2QA4 E;  3CF5 E;  3CCV E;  1YIJ E;  1VQ9 E;  3PIO E;  2QEX E;  3G4S E;  3CCM E;  1Q82 G;  3CCR E;  5DM6 E;  5GAH G;  2ZJP E;  2ZJQ E;  1M1K G;  3I55 E;  5DM7 E; 
#chains in the Genus database with same CATH topology
 5GAE G;  1YJ9 E;  5HL7 E;  1KQS E;  3CPW E;  1VQP E;  3OW2 E;  3CC7 E;  2G8C O;  1Q81 G;  1VQ6 E;  3IG9 A;  3IGE A;  2FKJ A;  1YJN E;  3CME E;  1NJI G;  1W2B E;  2OY1 O;  2AF5 A;  5MLC H;  1YI2 E;  1RJL C;  1QVF E;  4U67 E;  3EC5 A;  2OY5 O;  4WFN E;  1M90 G;  2OTJ E;  2OL7 A;  1VQ7 E;  1N8R G;  4WCE E;  3CCS E;  2I5Z O;  2HKD A;  4IOC E;  1RL6 A;  3CC4 E;  1S72 E;  1YJW E;  4UY8 G;  2FKG A;  3G6E E;  5AN9 B;  1Q86 G;  1VQ4 E;  1VQ5 E;  3CCQ E;  1VQL E;  1VQ8 E;  1FJ1 E;  1JJ2 E;  4IOA E;  1Q7Y G;  5JVH E;  1K9M G;  1KD1 G;  5GAG G;  1VQN E;  1YHQ E;  5H1S I;  1K73 G;  3G71 E;  2OY7 A;  2I5V O;  1YIT E;  3I56 E;  1K8A G;  3CKG A;  3CCE E;  4WFA E;  5B10 O;  3CMA E;  2OL8 O;  3CD6 E;  1QVG E;  5B3M O;  2OYB O;  3CXC E;  3CCJ E;  3CCU E;  4WF9 E;  3CCL E;  5JVG E;  3PIP E;  1P4P A;  2OL6 O;  4IO9 E;  1KC8 G;  1VQM E;  3AUM O;  5GAD G;  2ZJR E;  1VQK E;  2OTL E;  3DLL E;  5B11 O;  1VQO E;  4WFB E;  3CC2 E;  2CQL A;  3J7Z G;  2QA4 E;  3CF5 E;  3CCV E;  1YIJ E;  1VQ9 E;  3PIO E;  2QEX E;  3G4S E;  3CCM E;  1Q82 G;  2PI3 O;  3CCR E;  5DM6 E;  5B2A O;  5GAH G;  2ZJP E;  2ZJQ E;  1M1K G;  3I55 E;  5DM7 E;  2OY8 A;  1OSP O;  3CKF A; 
#chains in the Genus database with same CATH homology
 5GAE G;  1YJ9 E;  5HL7 E;  1KQS E;  3CPW E;  1VQP E;  3OW2 E;  3CC7 E;  1Q81 G;  1VQ6 E;  1YJN E;  3CME E;  1NJI G;  1W2B E;  5MLC H;  1YI2 E;  1QVF E;  4U67 E;  1M90 G;  4WFN E;  2OTJ E;  1VQ7 E;  1N8R G;  4WCE E;  3CCS E;  4IOC E;  1RL6 A;  3CC4 E;  1S72 E;  1YJW E;  4UY8 G;  3G6E E;  1Q86 G;  5AN9 B;  1VQ4 E;  1VQ5 E;  3CCQ E;  1VQL E;  1VQ8 E;  1JJ2 E;  4IOA E;  1Q7Y G;  5JVH E;  1K9M G;  1KD1 G;  5GAG G;  1VQN E;  1YHQ E;  5H1S I;  1K73 G;  3G71 E;  1YIT E;  3I56 E;  1K8A G;  3CCE E;  4WFA E;  3CMA E;  3CD6 E;  1QVG E;  3CXC E;  3CCJ E;  3CCU E;  4WF9 E;  3CCL E;  5JVG E;  3PIP E;  4IO9 E;  1KC8 G;  1VQM E;  5GAD G;  2ZJR E;  1VQK E;  2OTL E;  3DLL E;  1VQO E;  4WFB E;  3CC2 E;  2CQL A;  3J7Z G;  2QA4 E;  3CF5 E;  3CCV E;  1YIJ E;  1VQ9 E;  3PIO E;  2QEX E;  3G4S E;  3CCM E;  1Q82 G;  3CCR E;  5DM6 E;  5GAH G;  2ZJP E;  2ZJQ E;  1M1K G;  3I55 E;  5DM7 E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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