2ZJPG

Thiopeptide antibiotic nosiheptide bound to the large ribosomal subunit of deinococcus radiodurans
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
142
structure length
142
Chain Sequence
KTYIPKNDEQNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKVYTRYTGYQGGLKTETAREALSKHPERVIEHAVFGMLPKGRQGRAMHTRLKVYAGETHPHSAQKPQVLKTQPL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome/antibiotic
molecule keywords 50S RIBOSOMAL PROTEIN L33
publication title Translational Regulation Via L11: Molecular Switches on the Ribosome Turned on and Off by Thiostrepton and Micrococcin.
pubmed doi rcsb
total genus 24
structure length 142
sequence length 142
ec nomenclature
pdb deposition date 2008-03-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
G PF00572 Ribosomal_L13 Ribosomal protein L13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1180.10 Alpha Beta Alpha-Beta Complex Ribosomal Protein L13p; Chain: A; Ribosomal protein L13 2zjpG00
1M90K 2ZJQG 3PIPG 1YI2J 3CC2J 3OW2I 1KQSI 1Q82K 3DLLG 1QVGI 3G4SJ 1N8RK 1VQKJ 4V19N 3CCJJ 3CMEJ 2QA4J 1VQ4J 3CCMJ 4IOAG 1JJ2I 1VQLJ 1VQ8J 1K8AK 1QVFI 1M1KK 3CF5G 3J7YK 1K73K 1K9MK 1KD1K 4IO9G 1KC8K 1J3AA 2QEXJ 3CCLJ 3CCQJ 3CCEJ 3CMAJ 3PIOG 1Q81K 3I55J 3CXCI 1Q86K 1VQ6J 1YIJJ 1S72J 3CC4J 2OTJJ 3G71J 3CD6J 2ZJPG 3G6EJ 3CPWI 3CCUJ 1W2BI 1VQ7J 1VQPJ 1VQ5J 1VQNJ 1VQOJ 1YJ9J 3CCVJ 1VQMJ 1NJIK 3CCRJ 3CCSJ 1YITJ 3I56J 3CC7J 1YJWJ 2OTLJ 1Q7YK 1YHQJ 2ZJRG 1YJNJ 1VQ9J 4IOCG
chains in the Genus database with same CATH superfamily
1M90K 2ZJQG 3PIPG 1YI2J 3CC2J 3OW2I 1KQSI 1Q82K 3DLLG 1QVGI 3G4SJ 1N8RK 1VQKJ 4V19N 3CCJJ 3CMEJ 2QA4J 1VQ4J 3CCMJ 4IOAG 1JJ2I 1VQLJ 1VQ8J 1K8AK 1QVFI 1M1KK 3CF5G 3J7YK 1K73K 1K9MK 1KD1K 4IO9G 1KC8K 1J3AA 2QEXJ 3CCLJ 3CCQJ 3CCEJ 3CMAJ 3PIOG 1Q81K 3I55J 3CXCI 1Q86K 1VQ6J 1YIJJ 1S72J 3CC4J 2OTJJ 3G71J 3CD6J 2ZJPG 3G6EJ 3CPWI 3CCUJ 1W2BI 1VQ7J 1VQPJ 1VQ5J 1VQNJ 1VQOJ 1YJ9J 3CCVJ 1VQMJ 1NJIK 3CCRJ 3CCSJ 1YITJ 3I56J 3CC7J 1YJWJ 2OTLJ 1Q7YK 1YHQJ 2ZJRG 1YJNJ 1VQ9J 4IOCG
chains in the Genus database with same CATH topology
1M90K 2ZJQG 3PIPG 1YI2J 3CC2J 3OW2I 1KQSI 1Q82K 3DLLG 1QVGI 3G4SJ 1N8RK 1VQKJ 4V19N 3CCJJ 3CMEJ 2QA4J 1VQ4J 3CCMJ 4IOAG 1JJ2I 1VQLJ 1VQ8J 1K8AK 1QVFI 1M1KK 3CF5G 3J7YK 1K73K 1K9MK 1KD1K 4IO9G 1KC8K 1J3AA 2QEXJ 3CCLJ 3CCQJ 3CCEJ 3CMAJ 3PIOG 1Q81K 3I55J 3CXCI 1Q86K 1VQ6J 1YIJJ 1S72J 3CC4J 2OTJJ 3G71J 3CD6J 2ZJPG 3G6EJ 3CPWI 3CCUJ 1W2BI 1VQ7J 1VQPJ 1VQ5J 1VQNJ 1VQOJ 1YJ9J 3CCVJ 1VQMJ 1NJIK 3CCRJ 3CCSJ 1YITJ 3I56J 3CC7J 1YJWJ 2OTLJ 1Q7YK 1YHQJ 2ZJRG 1YJNJ 1VQ9J 4IOCG
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1M90 K;  2ZJQ G;  3PIP G;  1YI2 J;  3CC2 J;  3OW2 I;  1KQS I;  1Q82 K;  3DLL G;  1QVG I;  3G4S J;  1N8R K;  1VQK J;  4V19 N;  3CCJ J;  3CME J;  2QA4 J;  1VQ4 J;  3CCM J;  4IOA G;  1JJ2 I;  1VQL J;  1VQ8 J;  1K8A K;  1QVF I;  1M1K K;  3CF5 G;  3J7Y K;  1K73 K;  1K9M K;  1KD1 K;  4IO9 G;  1KC8 K;  1J3A A;  2QEX J;  3CCL J;  3CCQ J;  3CCE J;  3CMA J;  3PIO G;  1Q81 K;  3I55 J;  3CXC I;  1Q86 K;  1VQ6 J;  1YIJ J;  1S72 J;  3CC4 J;  2OTJ J;  3G71 J;  3CD6 J;  2ZJP G;  3G6E J;  3CPW I;  3CCU J;  1W2B I;  1VQ7 J;  1VQP J;  1VQ5 J;  1VQN J;  1VQO J;  1YJ9 J;  3CCV J;  1VQM J;  1NJI K;  3CCR J;  3CCS J;  1YIT J;  3I56 J;  3CC7 J;  1YJW J;  2OTL J;  1Q7Y K;  1YHQ J;  2ZJR G;  1YJN J;  1VQ9 J;  4IOC G; 
#chains in the Genus database with same CATH topology
 1M90 K;  2ZJQ G;  3PIP G;  1YI2 J;  3CC2 J;  3OW2 I;  1KQS I;  1Q82 K;  3DLL G;  1QVG I;  3G4S J;  1N8R K;  1VQK J;  4V19 N;  3CCJ J;  3CME J;  2QA4 J;  1VQ4 J;  3CCM J;  4IOA G;  1JJ2 I;  1VQL J;  1VQ8 J;  1K8A K;  1QVF I;  1M1K K;  3CF5 G;  3J7Y K;  1K73 K;  1K9M K;  1KD1 K;  4IO9 G;  1KC8 K;  1J3A A;  2QEX J;  3CCL J;  3CCQ J;  3CCE J;  3CMA J;  3PIO G;  1Q81 K;  3I55 J;  3CXC I;  1Q86 K;  1VQ6 J;  1YIJ J;  1S72 J;  3CC4 J;  2OTJ J;  3G71 J;  3CD6 J;  2ZJP G;  3G6E J;  3CPW I;  3CCU J;  1W2B I;  1VQ7 J;  1VQP J;  1VQ5 J;  1VQN J;  1VQO J;  1YJ9 J;  3CCV J;  1VQM J;  1NJI K;  3CCR J;  3CCS J;  1YIT J;  3I56 J;  3CC7 J;  1YJW J;  2OTL J;  1Q7Y K;  1YHQ J;  2ZJR G;  1YJN J;  1VQ9 J;  4IOC G; 
#chains in the Genus database with same CATH homology
 1M90 K;  2ZJQ G;  3PIP G;  1YI2 J;  3CC2 J;  3OW2 I;  1KQS I;  1Q82 K;  3DLL G;  1QVG I;  3G4S J;  1N8R K;  1VQK J;  4V19 N;  3CCJ J;  3CME J;  2QA4 J;  1VQ4 J;  3CCM J;  4IOA G;  1JJ2 I;  1VQL J;  1VQ8 J;  1K8A K;  1QVF I;  1M1K K;  3CF5 G;  3J7Y K;  1K73 K;  1K9M K;  1KD1 K;  4IO9 G;  1KC8 K;  1J3A A;  2QEX J;  3CCL J;  3CCQ J;  3CCE J;  3CMA J;  3PIO G;  1Q81 K;  3I55 J;  3CXC I;  1Q86 K;  1VQ6 J;  1YIJ J;  1S72 J;  3CC4 J;  2OTJ J;  3G71 J;  3CD6 J;  2ZJP G;  3G6E J;  3CPW I;  3CCU J;  1W2B I;  1VQ7 J;  1VQP J;  1VQ5 J;  1VQN J;  1VQO J;  1YJ9 J;  3CCV J;  1VQM J;  1NJI K;  3CCR J;  3CCS J;  1YIT J;  3I56 J;  3CC7 J;  1YJW J;  2OTL J;  1Q7Y K;  1YHQ J;  2ZJR G;  1YJN J;  1VQ9 J;  4IOC G; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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