2ZJPJ

Thiopeptide antibiotic nosiheptide bound to the large ribosomal subunit of deinococcus radiodurans
Total Genus 16
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
136
structure length
136
Chain Sequence
KRTKFRKQFRGRMTGDAKGGDYVAFGDYGLIAMEPAWIKSNQIEACRIVMSRHFRRGGKIYIRIFPDKPVTKKPAETRMGKGKGAVEYWVSVVKPGRVMFEVAGVTEEQAKEAFRLAGHKLPIQTKMVKREVYDEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome/antibiotic
molecule keywords 50S RIBOSOMAL PROTEIN L33
publication title Translational Regulation Via L11: Molecular Switches on the Ribosome Turned on and Off by Thiostrepton and Micrococcin.
pubmed doi rcsb
total genus 16
structure length 136
sequence length 136
ec nomenclature
pdb deposition date 2008-03-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
J PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 2zjpJ01
1K9MJ 3CCSH 1YITH 1WKIA 3CCJH 4IOCJ 2OTJH 2ZJQJ 3CXCH 1KC8J 4WFBJ 3PIPJ 3I56H 1VQ7H 1YJ9H 5AN9F 1M90J 3CC7H 3CCLH 3OW2H 3G71H 1Q86J 1YHQH 1K8AJ 3CPWH 1VQPH 2QA4H 3CCMH 3CCUH 1M1KJ 3CMAH 4UY8M 5H1SO 3CC4H 1VQ4H 4WFNJ 1VQMH 5DM7J 1Q81J 2ZJPJ 1KQSH 5HL7J 3CC2H 5JVHJ 1Q82J 3CMEH 1YI2H 1W2BH 1VQNH 1VQ5H 3CD6H 5GAEN 3CCQH 4IOAJ 1Y69K 1QVGH 3J7ZM 4WCEJ 3G4SH 3CCRH 1YJWH 2PA2A 1VQLH 2OTLH 1N8RJ 1JJ2H 5GADN 5MLCO 5JVGJ 3PIOJ 1VQKH 5GAGN 4WF9J 1YIJH 5DM6J 4WFAJ 1VQOH 3DLLJ 1VQ6H 3CF5J 1Q7YJ 3I55H 5GAHN 1KD1J 1VQ8H 1VQ9H 2QEXH 3G6EH 1K73J 1NJIJ 4U67J 3CCEH 1QVFH 2ZJRJ 3CCVH 1S72H 1YJNH 4IO9J
chains in the Genus database with same CATH superfamily
3NVWC 5EP8A 1K9MJ 3CCSH 2B7PA 4I9AA 4LHMA 2Q5WE 1YITH 1WKIA 3L4PA 3C2OA 3CCJH 1N5WB 1FFVB 4IOCJ 2OTJH 2ZJQJ 3CXCH 1SB3A 3RPFA 1QPQA 3B9JC 1KC8J 4WFBJ 3PIPJ 3I56H 4EADA 1VQ7H 1BRWA 5AN9F 1O4UA 1OTPA 3GNNA 1YJ9H 1M90J 2JBMA 3CC7H 3L0GA 3CCLH 5HUPA 3OW2H 3G71H 1Q86J 1RM6A 1QPNA 2W54B 1YHQH 2WK5A 2I1OA 1K8AJ 3CPWH 2QA4H 1VQPH 3CCMH 3CCUH 1M1KJ 3CMAH 4UY8M 1N61B 1QAPA 5EY3A 4XR5A 3PAJA 4KWWA 5H1SO 3CC4H 1VQ4H 4WFNJ 1VQMH 4GA6A 5DM7J 1Q81J 2ZJPJ 1ZXIB 1KQSH 3AM9A 4ZOHA 5HL7J 1UOUA 3CC2H 2J0FA 5JVHJ 1Q82J 3NVZC 3WO1A 3CMEH 2W3SB 1YI2H 3TQVA 1W2BH 2E3TA 2OMDA 4C7ZA 3C2FA 2W55B 1VQNH 4X46A 1VQ5H 4US9A 3CD6H 2DSJA 5GAEN 2WK6A 1SIJA 1YTKA 1WYGA 3CCQH 4IOAJ 1X1OA 1Y69K 1QVGH 3H5QA 4GA4A 1VDVA 1N63B 3J7ZM 1JROB 1QPRA 4WCEJ 3G4SH 4YYYA 3CCRH 1FO4A 2PA2A 1YJWH 1VQLH 2OTLH 1N8RJ 2W3RB 5GADN 1JJ2H 4YEKA 5MLCO 5JVGJ 4USAA 3PIOJ 1FIQC 5AYXA 1NVJA 1N60B 1VQKH 1JRPB 3ETRC 3EUB4 5GAGN 4WF9J 1YIJH 3AN1A 3NVVC 5HUOA 5DM6J 3SR6C 4WFAJ 3NVYC 1FMAE 4GA5A 4AP8A 3WO0A 1VQOH 3DLLJ 5AYZA 1DGJA 1N62B 1YTEA 3VMMA 1VQ6H 1YTDA 3CF5J 1Q7YJ 5AYYA 3BIIE 2I14A 1QPOA 2B7QA 3C2RA 3I55H 3AMZA 1VLBA 1V97A 5GAHN 3C2EA 1KD1J 2WP4A 3FAHA 4C7YA 1VQ8H 3NRZC 3WNZA 4EAFA 1VQ9H 5MPOC 2QEXH 2TPTA 4KWVA 3G6EH 2B7NA 4C80A 1K73J 3FC4A 1NJIJ 4U67J 3CCEH 1AZYA 1NVIE 1QVFH 2ZJRJ 3NS1C 4US8A 3CCVH 1S72H 1YJNH 2QIEA 5HULA 1N5XA 1FM0E 1FFUB 4IO9J 3C2VA
chains in the Genus database with same CATH topology
1K9MJ 3CCSH 1YITH 1WKIA 3CCJH 4IOCJ 2OTJH 2ZJQJ 3CXCH 1KC8J 4WFBJ 3PIPJ 3I56H 1VQ7H 1YJ9H 5AN9F 1M90J 3CC7H 3CCLH 3OW2H 3G71H 1Q86J 1YHQH 1K8AJ 3CPWH 1VQPH 2QA4H 3CCMH 3CCUH 1M1KJ 3CMAH 4UY8M 5H1SO 3CC4H 1VQ4H 4WFNJ 1VQMH 5DM7J 1Q81J 2ZJPJ 1KQSH 5HL7J 3CC2H 5JVHJ 1Q82J 3CMEH 1YI2H 1W2BH 1VQNH 1VQ5H 3CD6H 5GAEN 3CCQH 4IOAJ 1Y69K 1QVGH 3J7ZM 4WCEJ 3G4SH 3CCRH 1YJWH 2PA2A 1VQLH 2OTLH 1N8RJ 1JJ2H 5GADN 5MLCO 5JVGJ 3PIOJ 1VQKH 5GAGN 4WF9J 1YIJH 5DM6J 4WFAJ 1VQOH 3DLLJ 1VQ6H 3CF5J 1Q7YJ 3I55H 5GAHN 1KD1J 1VQ8H 1VQ9H 2QEXH 3G6EH 1K73J 1NJIJ 4U67J 3CCEH 1QVFH 2ZJRJ 3CCVH 1S72H 1YJNH 4IO9J
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1K9M J;  3CCS H;  1YIT H;  1WKI A;  3CCJ H;  4IOC J;  2OTJ H;  2ZJQ J;  3CXC H;  1KC8 J;  4WFB J;  3PIP J;  3I56 H;  1VQ7 H;  1YJ9 H;  5AN9 F;  1M90 J;  3CC7 H;  3CCL H;  3OW2 H;  3G71 H;  1Q86 J;  1YHQ H;  1K8A J;  3CPW H;  1VQP H;  2QA4 H;  3CCM H;  3CCU H;  1M1K J;  3CMA H;  4UY8 M;  5H1S O;  3CC4 H;  1VQ4 H;  4WFN J;  1VQM H;  5DM7 J;  1Q81 J;  2ZJP J;  1KQS H;  5HL7 J;  3CC2 H;  5JVH J;  1Q82 J;  3CME H;  1YI2 H;  1W2B H;  1VQN H;  1VQ5 H;  3CD6 H;  5GAE N;  3CCQ H;  4IOA J;  1Y69 K;  1QVG H;  3J7Z M;  4WCE J;  3G4S H;  3CCR H;  1YJW H;  2PA2 A;  1VQL H;  2OTL H;  1N8R J;  1JJ2 H;  5GAD N;  5MLC O;  5JVG J;  3PIO J;  1VQK H;  5GAG N;  4WF9 J;  1YIJ H;  5DM6 J;  4WFA J;  1VQO H;  3DLL J;  1VQ6 H;  3CF5 J;  1Q7Y J;  3I55 H;  5GAH N;  1KD1 J;  1VQ8 H;  1VQ9 H;  2QEX H;  3G6E H;  1K73 J;  1NJI J;  4U67 J;  3CCE H;  1QVF H;  2ZJR J;  3CCV H;  1S72 H;  1YJN H;  4IO9 J; 
#chains in the Genus database with same CATH topology
 3NVW C;  5EP8 A;  1K9M J;  3CCS H;  2B7P A;  4I9A A;  4LHM A;  2Q5W E;  1YIT H;  1WKI A;  3L4P A;  3C2O A;  3CCJ H;  1N5W B;  1FFV B;  4IOC J;  2OTJ H;  2ZJQ J;  3CXC H;  1SB3 A;  3RPF A;  1QPQ A;  3B9J C;  1KC8 J;  4WFB J;  3PIP J;  3I56 H;  4EAD A;  1VQ7 H;  1BRW A;  5AN9 F;  1O4U A;  1OTP A;  3GNN A;  1YJ9 H;  1M90 J;  2JBM A;  3CC7 H;  3L0G A;  3CCL H;  5HUP A;  3OW2 H;  3G71 H;  1Q86 J;  1RM6 A;  1QPN A;  2W54 B;  1YHQ H;  2WK5 A;  2I1O A;  1K8A J;  3CPW H;  2QA4 H;  1VQP H;  3CCM H;  3CCU H;  1M1K J;  3CMA H;  4UY8 M;  1N61 B;  1QAP A;  5EY3 A;  4XR5 A;  3PAJ A;  4KWW A;  5H1S O;  3CC4 H;  1VQ4 H;  4WFN J;  1VQM H;  4GA6 A;  5DM7 J;  1Q81 J;  2ZJP J;  1ZXI B;  1KQS H;  3AM9 A;  4ZOH A;  5HL7 J;  1UOU A;  3CC2 H;  2J0F A;  5JVH J;  1Q82 J;  3NVZ C;  3WO1 A;  3CME H;  2W3S B;  1YI2 H;  3TQV A;  1W2B H;  2E3T A;  2OMD A;  4C7Z A;  3C2F A;  2W55 B;  1VQN H;  4X46 A;  1VQ5 H;  4US9 A;  3CD6 H;  2DSJ A;  5GAE N;  2WK6 A;  1SIJ A;  1YTK A;  1WYG A;  3CCQ H;  4IOA J;  1X1O A;  1Y69 K;  1QVG H;  3H5Q A;  4GA4 A;  1VDV A;  1N63 B;  3J7Z M;  1JRO B;  1QPR A;  4WCE J;  3G4S H;  4YYY A;  3CCR H;  1FO4 A;  2PA2 A;  1YJW H;  1VQL H;  2OTL H;  1N8R J;  2W3R B;  5GAD N;  1JJ2 H;  4YEK A;  5MLC O;  5JVG J;  4USA A;  3PIO J;  1FIQ C;  5AYX A;  1NVJ A;  1N60 B;  1VQK H;  1JRP B;  3ETR C;  3EUB 4;  5GAG N;  4WF9 J;  1YIJ H;  3AN1 A;  3NVV C;  5HUO A;  5DM6 J;  3SR6 C;  4WFA J;  3NVY C;  1FMA E;  4GA5 A;  4AP8 A;  3WO0 A;  1VQO H;  3DLL J;  5AYZ A;  1DGJ A;  1N62 B;  1YTE A;  3VMM A;  1VQ6 H;  1YTD A;  3CF5 J;  1Q7Y J;  5AYY A;  3BII E;  2I14 A;  1QPO A;  2B7Q A;  3C2R A;  3I55 H;  3AMZ A;  1VLB A;  1V97 A;  5GAH N;  3C2E A;  1KD1 J;  2WP4 A;  3FAH A;  4C7Y A;  1VQ8 H;  3NRZ C;  3WNZ A;  4EAF A;  1VQ9 H;  5MPO C;  2QEX H;  2TPT A;  4KWV A;  3G6E H;  2B7N A;  4C80 A;  1K73 J;  3FC4 A;  1NJI J;  4U67 J;  3CCE H;  1AZY A;  1NVI E;  1QVF H;  2ZJR J;  3NS1 C;  4US8 A;  3CCV H;  1S72 H;  1YJN H;  2QIE A;  5HUL A;  1N5X A;  1FM0 E;  1FFU B;  4IO9 J;  3C2V A; 
#chains in the Genus database with same CATH homology
 1K9M J;  3CCS H;  1YIT H;  1WKI A;  3CCJ H;  4IOC J;  2OTJ H;  2ZJQ J;  3CXC H;  1KC8 J;  4WFB J;  3PIP J;  3I56 H;  1VQ7 H;  1YJ9 H;  5AN9 F;  1M90 J;  3CC7 H;  3CCL H;  3OW2 H;  3G71 H;  1Q86 J;  1YHQ H;  1K8A J;  3CPW H;  1VQP H;  2QA4 H;  3CCM H;  3CCU H;  1M1K J;  3CMA H;  4UY8 M;  5H1S O;  3CC4 H;  1VQ4 H;  4WFN J;  1VQM H;  5DM7 J;  1Q81 J;  2ZJP J;  1KQS H;  5HL7 J;  3CC2 H;  5JVH J;  1Q82 J;  3CME H;  1YI2 H;  1W2B H;  1VQN H;  1VQ5 H;  3CD6 H;  5GAE N;  3CCQ H;  4IOA J;  1Y69 K;  1QVG H;  3J7Z M;  4WCE J;  3G4S H;  3CCR H;  1YJW H;  2PA2 A;  1VQL H;  2OTL H;  1N8R J;  1JJ2 H;  5GAD N;  5MLC O;  5JVG J;  3PIO J;  1VQK H;  5GAG N;  4WF9 J;  1YIJ H;  5DM6 J;  4WFA J;  1VQO H;  3DLL J;  1VQ6 H;  3CF5 J;  1Q7Y J;  3I55 H;  5GAH N;  1KD1 J;  1VQ8 H;  1VQ9 H;  2QEX H;  3G6E H;  1K73 J;  1NJI J;  4U67 J;  3CCE H;  1QVF H;  2ZJR J;  3CCV H;  1S72 H;  1YJN H;  4IO9 J; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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