2ZJQD

Interaction of l7 with l11 induced by microccocin binding to the deinococcus radiodurans 50s subunit
Total Genus 31
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
177
structure length
177
Chain Sequence
QLKTKYNDQVRPALMQQFGYSSVMAVPRIEKIVVNEGLGSSKEDSKAIDKAAKELALITLQKPIITKAKKSISNFKLRQGMPVGIKVTLRGERMYVFLEKLINIGLPRIRDFRGINPNAFDGRGNYNLGIKEQLIFPEITYDMVDKTRGMDITIVTTAKTDEEARALLQSMGLPFRK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Ribosome
molecule keywords ribosomal 23S RNA
publication title Translational regulation via L11: molecular switches on the ribosome turned on and off by thiostrepton and micrococcin.
pubmed doi rcsb
total genus 31
structure length 177
sequence length 177
ec nomenclature
pdb deposition date 2008-03-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00281 Ribosomal_L5 Ribosomal protein L5
D PF00673 Ribosomal_L5_C ribosomal L5P family C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1440.10 Alpha Beta 2-Layer Sandwich 50s Ribosomal Protein L5; Chain: A, 50s Ribosomal Protein L5; Chain: A, 2zjqD00
1VQ9D 2OGKA 2WNYA 1IQ4A 4UY8F 2QA4D 1Q86F 3PIPD 3CCED 1Q7YF 3CMAD 3PIOD 1S72D 1VQPD 1M1KF 4WCED 2PZZA 5JVHD 3CC2D 2ZJPD 1KQSD 5MLCG 3I56D 3DLLD 1NJIF 3J7ZF 2NRQA 1VQ7D 1VQ4D 3CXCD 4IO9D 4WFBD 1N8RF 3CMED 5H1SH 1YJND 4IOAD 4IOCD 1JJ2D 1VQOD 5GADF 1YIJD 1K73F 3G4SD 4U67D 1MJIA 3CCVD 1W2BD 3CPWD 3CCJD 1Q82F 3CD6D 3CCMD 2NWUA 2ZJRD 3CCUD 1VQMD 1VQND 1VQ5D 2OTJD 1K9MF 4WF9D 1VQ8D 1M90F 1QVFD 5GAGF 4WFND 1VQKD 1YITD 3CC7D 5DM6D 4WFAD 1VQ6D 3C9GA 1K8AF 3D7AA 1YJ9D 5GAHF 1YJWD 3CCQD 1KC8F 3CC4D 5HL7D 3OW2D 1VQLD 5JVGD 5DM7D 2QEXD 3I55D 2OTLD 1Q81F 3CCLD 5GAEF 2ZJQD 1YHQD 3CCRD 3G6ED 1QVGD 3CCSD 3CF5D 1KD1F 1YI2D 3G71D
chains in the Genus database with same CATH superfamily
1VQ9D 2OGKA 2WNYA 1IQ4A 4UY8F 2QA4D 1Q86F 3PIPD 3CCED 1Q7YF 3CMAD 3PIOD 1S72D 1VQPD 1M1KF 4WCED 2PZZA 5JVHD 3CC2D 2ZJPD 1KQSD 5MLCG 3I56D 3DLLD 1NJIF 3J7ZF 2NRQA 1VQ7D 1VQ4D 3CXCD 4IO9D 4WFBD 1N8RF 3CMED 5H1SH 1YJND 4IOAD 4IOCD 1JJ2D 1VQOD 5GADF 1YIJD 1K73F 3G4SD 4U67D 1MJIA 3CCVD 1W2BD 3CPWD 3CCJD 1Q82F 3CD6D 3CCMD 2NWUA 2ZJRD 3CCUD 1VQMD 1VQND 1VQ5D 2OTJD 1K9MF 4WF9D 1VQ8D 1M90F 1QVFD 5GAGF 4WFND 1VQKD 1YITD 3CC7D 5DM6D 4WFAD 1VQ6D 3C9GA 1K8AF 3D7AA 1YJ9D 5GAHF 1YJWD 3CCQD 1KC8F 3CC4D 5HL7D 3OW2D 1VQLD 5JVGD 5DM7D 2QEXD 3I55D 2OTLD 1Q81F 3CCLD 5GAEF 2ZJQD 1YHQD 3CCRD 3G6ED 1QVGD 3CCSD 3CF5D 1KD1F 1YI2D 3G71D
chains in the Genus database with same CATH topology
1VQ9D 2OGKA 2WNYA 1IQ4A 4UY8F 2QA4D 1Q86F 3PIPD 3CCED 1Q7YF 3CMAD 3PIOD 1S72D 1VQPD 1M1KF 4WCED 2PZZA 5JVHD 3CC2D 2ZJPD 1KQSD 5MLCG 3I56D 3DLLD 1NJIF 3J7ZF 2NRQA 1VQ7D 1VQ4D 3CXCD 4IO9D 4WFBD 1N8RF 3CMED 5H1SH 1YJND 4IOAD 4IOCD 1JJ2D 1VQOD 5GADF 1YIJD 1K73F 3G4SD 4U67D 1MJIA 3CCVD 1W2BD 3CPWD 3CCJD 1Q82F 3CD6D 3CCMD 2NWUA 2ZJRD 3CCUD 1VQMD 1VQND 1VQ5D 2OTJD 1K9MF 4WF9D 1VQ8D 1M90F 1QVFD 5GAGF 4WFND 1VQKD 1YITD 3CC7D 5DM6D 4WFAD 1VQ6D 3C9GA 1K8AF 3D7AA 1YJ9D 5GAHF 1YJWD 3CCQD 1KC8F 3CC4D 5HL7D 3OW2D 1VQLD 5JVGD 5DM7D 2QEXD 3I55D 2OTLD 1Q81F 3CCLD 5GAEF 2ZJQD 1YHQD 3CCRD 3G6ED 1QVGD 3CCSD 3CF5D 1KD1F 1YI2D 3G71D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VQ9 D;  2OGK A;  2WNY A;  1IQ4 A;  4UY8 F;  2QA4 D;  1Q86 F;  3PIP D;  3CCE D;  1Q7Y F;  3CMA D;  3PIO D;  1S72 D;  1VQP D;  1M1K F;  4WCE D;  2PZZ A;  5JVH D;  3CC2 D;  2ZJP D;  1KQS D;  5MLC G;  3I56 D;  3DLL D;  1NJI F;  3J7Z F;  2NRQ A;  1VQ7 D;  1VQ4 D;  3CXC D;  4IO9 D;  4WFB D;  1N8R F;  3CME D;  5H1S H;  1YJN D;  4IOA D;  4IOC D;  1JJ2 D;  1VQO D;  5GAD F;  1YIJ D;  1K73 F;  3G4S D;  4U67 D;  1MJI A;  3CCV D;  1W2B D;  3CPW D;  3CCJ D;  1Q82 F;  3CD6 D;  3CCM D;  2NWU A;  2ZJR D;  3CCU D;  1VQM D;  1VQN D;  1VQ5 D;  2OTJ D;  1K9M F;  4WF9 D;  1VQ8 D;  1M90 F;  1QVF D;  5GAG F;  4WFN D;  1VQK D;  1YIT D;  3CC7 D;  5DM6 D;  4WFA D;  1VQ6 D;  3C9G A;  1K8A F;  3D7A A;  1YJ9 D;  5GAH F;  1YJW D;  3CCQ D;  1KC8 F;  3CC4 D;  5HL7 D;  3OW2 D;  1VQL D;  5JVG D;  5DM7 D;  2QEX D;  3I55 D;  2OTL D;  1Q81 F;  3CCL D;  5GAE F;  2ZJQ D;  1YHQ D;  3CCR D;  3G6E D;  1QVG D;  3CCS D;  3CF5 D;  1KD1 F;  1YI2 D;  3G71 D; 
#chains in the Genus database with same CATH topology
 1VQ9 D;  2OGK A;  2WNY A;  1IQ4 A;  4UY8 F;  2QA4 D;  1Q86 F;  3PIP D;  3CCE D;  1Q7Y F;  3CMA D;  3PIO D;  1S72 D;  1VQP D;  1M1K F;  4WCE D;  2PZZ A;  5JVH D;  3CC2 D;  2ZJP D;  1KQS D;  5MLC G;  3I56 D;  3DLL D;  1NJI F;  3J7Z F;  2NRQ A;  1VQ7 D;  1VQ4 D;  3CXC D;  4IO9 D;  4WFB D;  1N8R F;  3CME D;  5H1S H;  1YJN D;  4IOA D;  4IOC D;  1JJ2 D;  1VQO D;  5GAD F;  1YIJ D;  1K73 F;  3G4S D;  4U67 D;  1MJI A;  3CCV D;  1W2B D;  3CPW D;  3CCJ D;  1Q82 F;  3CD6 D;  3CCM D;  2NWU A;  2ZJR D;  3CCU D;  1VQM D;  1VQN D;  1VQ5 D;  2OTJ D;  1K9M F;  4WF9 D;  1VQ8 D;  1M90 F;  1QVF D;  5GAG F;  4WFN D;  1VQK D;  1YIT D;  3CC7 D;  5DM6 D;  4WFA D;  1VQ6 D;  3C9G A;  1K8A F;  3D7A A;  1YJ9 D;  5GAH F;  1YJW D;  3CCQ D;  1KC8 F;  3CC4 D;  5HL7 D;  3OW2 D;  1VQL D;  5JVG D;  5DM7 D;  2QEX D;  3I55 D;  2OTL D;  1Q81 F;  3CCL D;  5GAE F;  2ZJQ D;  1YHQ D;  3CCR D;  3G6E D;  1QVG D;  3CCS D;  3CF5 D;  1KD1 F;  1YI2 D;  3G71 D; 
#chains in the Genus database with same CATH homology
 1VQ9 D;  2OGK A;  2WNY A;  1IQ4 A;  4UY8 F;  2QA4 D;  1Q86 F;  3PIP D;  3CCE D;  1Q7Y F;  3CMA D;  3PIO D;  1S72 D;  1VQP D;  1M1K F;  4WCE D;  2PZZ A;  5JVH D;  3CC2 D;  2ZJP D;  1KQS D;  5MLC G;  3I56 D;  3DLL D;  1NJI F;  3J7Z F;  2NRQ A;  1VQ7 D;  1VQ4 D;  3CXC D;  4IO9 D;  4WFB D;  1N8R F;  3CME D;  5H1S H;  1YJN D;  4IOA D;  4IOC D;  1JJ2 D;  1VQO D;  5GAD F;  1YIJ D;  1K73 F;  3G4S D;  4U67 D;  1MJI A;  3CCV D;  1W2B D;  3CPW D;  3CCJ D;  1Q82 F;  3CD6 D;  3CCM D;  2NWU A;  2ZJR D;  3CCU D;  1VQM D;  1VQN D;  1VQ5 D;  2OTJ D;  1K9M F;  4WF9 D;  1VQ8 D;  1M90 F;  1QVF D;  5GAG F;  4WFN D;  1VQK D;  1YIT D;  3CC7 D;  5DM6 D;  4WFA D;  1VQ6 D;  3C9G A;  1K8A F;  3D7A A;  1YJ9 D;  5GAH F;  1YJW D;  3CCQ D;  1KC8 F;  3CC4 D;  5HL7 D;  3OW2 D;  1VQL D;  5JVG D;  5DM7 D;  2QEX D;  3I55 D;  2OTL D;  1Q81 F;  3CCL D;  5GAE F;  2ZJQ D;  1YHQ D;  3CCR D;  3G6E D;  1QVG D;  3CCS D;  3CF5 D;  1KD1 F;  1YI2 D;  3G71 D; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...