2ZJRJ

Refined native structure of the large ribosomal subunit (50s) from deinococcus radiodurans
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
136
structure length
136
Chain Sequence
KRTKFRKQFRGRMTGDAKGGDYVAFGDYGLIAMEPAWIKSNQIEACRIVMSRHFRRGGKIYIRIFPDKPVTKKPAETRMGKGKGAVEYWVSVVKPGRVMFEVAGVTEEQAKEAFRLAGHKLPIQTKMVKREVYDEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
publication title Translational regulation via L11: molecular switches on the ribosome turned on and off by thiostrepton and micrococcin.
pubmed doi rcsb
molecule keywords ribosomal 23S RNA
total genus 19
structure length 136
sequence length 136
ec nomenclature
pdb deposition date 2008-03-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
J PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 2zjrJ01
5GADN 2ZJQJ 1VQ4H 3CD6H 1VQOH 3CMAH 1QVGH 5HL7J 1Q81J 2PA2A 5DM6J 1VQLH 3CC2H 4WF9J 5DM7J 3CCRH 3G4SH 5MLCO 3I55H 1YI2H 2ZJPJ 3CCLH 3CCUH 1YJNH 4IOCJ 5H1SO 5GAGN 3CCQH 4WFNJ 3CCMH 1WKIA 3CCEH 1Q82J 4WFBJ 3PIPJ 3CCJH 1YHQH 1YJ9H 1Q7YJ 1YITH 1K9MJ 1M90J 3I56H 3CCVH 3J7ZM 5GAHN 5JVGJ 1VQ9H 1Q86J 3CC7H 4UY8M 2OTLH 4IOAJ 2OTJH 4WCEJ 1VQPH 4U67J 5AN9F 3CCSH 1Y69K 1NJIJ 1VQ8H 1VQ5H 3CPWH 1S72H 3G71H 1VQNH 2QA4H 1M1KJ 1VQ6H 1KQSH 2ZJRJ 1YJWH 1VQ7H 1YIJH 1JJ2H 3PIOJ 1VQMH 1KD1J 1K73J 3CF5J 2QEXH 3OW2H 1N8RJ 3CMEH 3G6EH 5GAEN 4IO9J 1KC8J 1VQKH 4WFAJ 3CC4H 1K8AJ 1W2BH 5JVHJ 3CXCH 3DLLJ 1QVFH
chains in the Genus database with same CATH superfamily
5GADN 5HULA 3WO0A 4XR5A 4LHMA 2ZJQJ 1VQ4H 3CD6H 1VQOH 2J0FA 1N5WB 2B7NA 3CMAH 2W55B 4GA6A 1JRPB 1QVGH 5HL7J 1Q81J 2PA2A 1DGJA 2OMDA 5DM6J 1VQLH 1O4UA 4KWWA 4WF9J 3CC2H 3C2EA 1RM6A 5DM7J 1FFVB 4C7ZA 2TPTA 3CCRH 3GNNA 3NVZC 3G4SH 5MLCO 5AYXA 3I55H 1YI2H 1QPQA 2ZJPJ 1X1OA 5AYYA 2W3RB 3CCLH 3CCUH 1YJNH 2JBMA 1FM0E 3WNZA 4IOCJ 5H1SO 5GAGN 3CCQH 1FIQC 4US9A 4GA5A 1BRWA 1UOUA 4US8A 3AMZA 4WFNJ 3RPFA 3CCMH 3AM9A 1QPRA 1WKIA 3CCEH 1Q82J 3C2FA 1NVJA 4WFBJ 3PIPJ 3CCJH 1N61B 3DLLJ 3H5QA 3SR6C 1OTPA 1YHQH 1YJ9H 2I14A 3NVVC 3L0GA 4I9AA 1Q7YJ 1YITH 1K9MJ 1FO4A 1M90J 3I56H 2W54B 1VLBA 3J7ZM 3CCVH 5GAHN 5JVGJ 2E3TA 1SB3A 1YTEA 1N60B 3B9JC 5EY3A 1VQ9H 1Q86J 1QAPA 4EADA 3CC7H 1FFUB 3BIIE 5MPOC 4UY8M 2OTLH 3C2RA 4C80A 1YTKA 4IOAJ 2OTJH 4WCEJ 2WK5A 3FAHA 1VQPH 1ZXIB 4ZOHA 5AN9F 4U67J 3CCSH 1Y69K 1NJIJ 1VQ8H 1VQ5H 3CPWH 1S72H 4GA4A 3G71H 3L4PA 3C2OA 2W3SB 3NVYC 1VQNH 2QA4H 1M1KJ 2DSJA 2B7QA 1VQ6H 2QIEA 1KQSH 2ZJRJ 1QPNA 1YTDA 1YJWH 1V97A 1VQ7H 1YIJH 4EAFA 1FMAE 4USAA 1VDVA 1JJ2H 2WK6A 3NS1C 3PIOJ 5HUOA 1VQMH 4YEKA 3PAJA 1KD1J 1K73J 4YYYA 3CF5J 3FC4A 2QEXH 4KWVA 3NVWC 4AP8A 1QPOA 1SIJA 3OW2H 3WO1A 1N62B 3ETRC 1N8RJ 3CMEH 1N63B 3G6EH 5GAEN 1NVIE 4IO9J 1KC8J 1VQKH 2B7PA 4WFAJ 1WYGA 3VMMA 3CC4H 1K8AJ 3TQVA 1W2BH 2I1OA 3C2VA 5EP8A 2Q5WE 1AZYA 3NRZC 5AYZA 5HUPA 4C7YA 3AN1A 1JROB 3EUB4 5JVHJ 2WP4A 3CXCH 4X46A 1N5XA 1QVFH
chains in the Genus database with same CATH topology
5GADN 2ZJQJ 1VQ4H 3CD6H 1VQOH 3CMAH 1QVGH 5HL7J 1Q81J 2PA2A 5DM6J 1VQLH 3CC2H 4WF9J 5DM7J 3CCRH 3G4SH 5MLCO 3I55H 1YI2H 2ZJPJ 3CCLH 3CCUH 1YJNH 4IOCJ 5H1SO 5GAGN 3CCQH 4WFNJ 3CCMH 1WKIA 3CCEH 1Q82J 4WFBJ 3PIPJ 3CCJH 1YHQH 1YJ9H 1Q7YJ 1YITH 1K9MJ 1M90J 3I56H 3CCVH 3J7ZM 5GAHN 5JVGJ 1VQ9H 1Q86J 3CC7H 4UY8M 2OTLH 4IOAJ 2OTJH 4WCEJ 1VQPH 4U67J 5AN9F 3CCSH 1Y69K 1NJIJ 1VQ8H 1VQ5H 3CPWH 1S72H 3G71H 1VQNH 2QA4H 1M1KJ 1VQ6H 1KQSH 2ZJRJ 1YJWH 1VQ7H 1YIJH 1JJ2H 3PIOJ 1VQMH 1KD1J 1K73J 3CF5J 2QEXH 3OW2H 1N8RJ 3CMEH 3G6EH 5GAEN 4IO9J 1KC8J 1VQKH 4WFAJ 3CC4H 1K8AJ 1W2BH 5JVHJ 3CXCH 3DLLJ 1QVFH
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5GAD N;  2ZJQ J;  1VQ4 H;  3CD6 H;  1VQO H;  3CMA H;  1QVG H;  5HL7 J;  1Q81 J;  2PA2 A;  5DM6 J;  1VQL H;  3CC2 H;  4WF9 J;  5DM7 J;  3CCR H;  3G4S H;  5MLC O;  3I55 H;  1YI2 H;  2ZJP J;  3CCL H;  3CCU H;  1YJN H;  4IOC J;  5H1S O;  5GAG N;  3CCQ H;  4WFN J;  3CCM H;  1WKI A;  3CCE H;  1Q82 J;  4WFB J;  3PIP J;  3CCJ H;  1YHQ H;  1YJ9 H;  1Q7Y J;  1YIT H;  1K9M J;  1M90 J;  3I56 H;  3CCV H;  3J7Z M;  5GAH N;  5JVG J;  1VQ9 H;  1Q86 J;  3CC7 H;  4UY8 M;  2OTL H;  4IOA J;  2OTJ H;  4WCE J;  1VQP H;  4U67 J;  5AN9 F;  3CCS H;  1Y69 K;  1NJI J;  1VQ8 H;  1VQ5 H;  3CPW H;  1S72 H;  3G71 H;  1VQN H;  2QA4 H;  1M1K J;  1VQ6 H;  1KQS H;  2ZJR J;  1YJW H;  1VQ7 H;  1YIJ H;  1JJ2 H;  3PIO J;  1VQM H;  1KD1 J;  1K73 J;  3CF5 J;  2QEX H;  3OW2 H;  1N8R J;  3CME H;  3G6E H;  5GAE N;  4IO9 J;  1KC8 J;  1VQK H;  4WFA J;  3CC4 H;  1K8A J;  1W2B H;  5JVH J;  3CXC H;  3DLL J;  1QVF H; 
#chains in the Genus database with same CATH topology
 5GAD N;  5HUL A;  3WO0 A;  4XR5 A;  4LHM A;  2ZJQ J;  1VQ4 H;  3CD6 H;  1VQO H;  2J0F A;  1N5W B;  2B7N A;  3CMA H;  2W55 B;  4GA6 A;  1JRP B;  1QVG H;  5HL7 J;  1Q81 J;  2PA2 A;  1DGJ A;  2OMD A;  5DM6 J;  1VQL H;  1O4U A;  4KWW A;  4WF9 J;  3CC2 H;  3C2E A;  1RM6 A;  5DM7 J;  1FFV B;  4C7Z A;  2TPT A;  3CCR H;  3GNN A;  3NVZ C;  3G4S H;  5MLC O;  5AYX A;  3I55 H;  1YI2 H;  1QPQ A;  2ZJP J;  1X1O A;  5AYY A;  2W3R B;  3CCL H;  3CCU H;  1YJN H;  2JBM A;  1FM0 E;  3WNZ A;  4IOC J;  5H1S O;  5GAG N;  3CCQ H;  1FIQ C;  4US9 A;  4GA5 A;  1BRW A;  1UOU A;  4US8 A;  3AMZ A;  4WFN J;  3RPF A;  3CCM H;  3AM9 A;  1QPR A;  1WKI A;  3CCE H;  1Q82 J;  3C2F A;  1NVJ A;  4WFB J;  3PIP J;  3CCJ H;  1N61 B;  3DLL J;  3H5Q A;  3SR6 C;  1OTP A;  1YHQ H;  1YJ9 H;  2I14 A;  3NVV C;  3L0G A;  4I9A A;  1Q7Y J;  1YIT H;  1K9M J;  1FO4 A;  1M90 J;  3I56 H;  2W54 B;  1VLB A;  3J7Z M;  3CCV H;  5GAH N;  5JVG J;  2E3T A;  1SB3 A;  1YTE A;  1N60 B;  3B9J C;  5EY3 A;  1VQ9 H;  1Q86 J;  1QAP A;  4EAD A;  3CC7 H;  1FFU B;  3BII E;  5MPO C;  4UY8 M;  2OTL H;  3C2R A;  4C80 A;  1YTK A;  4IOA J;  2OTJ H;  4WCE J;  2WK5 A;  3FAH A;  1VQP H;  1ZXI B;  4ZOH A;  5AN9 F;  4U67 J;  3CCS H;  1Y69 K;  1NJI J;  1VQ8 H;  1VQ5 H;  3CPW H;  1S72 H;  4GA4 A;  3G71 H;  3L4P A;  3C2O A;  2W3S B;  3NVY C;  1VQN H;  2QA4 H;  1M1K J;  2DSJ A;  2B7Q A;  1VQ6 H;  2QIE A;  1KQS H;  2ZJR J;  1QPN A;  1YTD A;  1YJW H;  1V97 A;  1VQ7 H;  1YIJ H;  4EAF A;  1FMA E;  4USA A;  1VDV A;  1JJ2 H;  2WK6 A;  3NS1 C;  3PIO J;  5HUO A;  1VQM H;  4YEK A;  3PAJ A;  1KD1 J;  1K73 J;  4YYY A;  3CF5 J;  3FC4 A;  2QEX H;  4KWV A;  3NVW C;  4AP8 A;  1QPO A;  1SIJ A;  3OW2 H;  3WO1 A;  1N62 B;  3ETR C;  1N8R J;  3CME H;  1N63 B;  3G6E H;  5GAE N;  1NVI E;  4IO9 J;  1KC8 J;  1VQK H;  2B7P A;  4WFA J;  1WYG A;  3VMM A;  3CC4 H;  1K8A J;  3TQV A;  1W2B H;  2I1O A;  3C2V A;  5EP8 A;  2Q5W E;  1AZY A;  3NRZ C;  5AYZ A;  5HUP A;  4C7Y A;  3AN1 A;  1JRO B;  3EUB 4;  5JVH J;  2WP4 A;  3CXC H;  4X46 A;  1N5X A;  1QVF H; 
#chains in the Genus database with same CATH homology
 5GAD N;  2ZJQ J;  1VQ4 H;  3CD6 H;  1VQO H;  3CMA H;  1QVG H;  5HL7 J;  1Q81 J;  2PA2 A;  5DM6 J;  1VQL H;  3CC2 H;  4WF9 J;  5DM7 J;  3CCR H;  3G4S H;  5MLC O;  3I55 H;  1YI2 H;  2ZJP J;  3CCL H;  3CCU H;  1YJN H;  4IOC J;  5H1S O;  5GAG N;  3CCQ H;  4WFN J;  3CCM H;  1WKI A;  3CCE H;  1Q82 J;  4WFB J;  3PIP J;  3CCJ H;  1YHQ H;  1YJ9 H;  1Q7Y J;  1YIT H;  1K9M J;  1M90 J;  3I56 H;  3CCV H;  3J7Z M;  5GAH N;  5JVG J;  1VQ9 H;  1Q86 J;  3CC7 H;  4UY8 M;  2OTL H;  4IOA J;  2OTJ H;  4WCE J;  1VQP H;  4U67 J;  5AN9 F;  3CCS H;  1Y69 K;  1NJI J;  1VQ8 H;  1VQ5 H;  3CPW H;  1S72 H;  3G71 H;  1VQN H;  2QA4 H;  1M1K J;  1VQ6 H;  1KQS H;  2ZJR J;  1YJW H;  1VQ7 H;  1YIJ H;  1JJ2 H;  3PIO J;  1VQM H;  1KD1 J;  1K73 J;  3CF5 J;  2QEX H;  3OW2 H;  1N8R J;  3CME H;  3G6E H;  5GAE N;  4IO9 J;  1KC8 J;  1VQK H;  4WFA J;  3CC4 H;  1K8A J;  1W2B H;  5JVH J;  3CXC H;  3DLL J;  1QVF H; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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