2ZO9B

Malonate-bound structure of the glycerophosphodiesterase from enterobacter aerogenes (gpdq) and characterization of the native fe2+ metal ion preference
Total Genus 74
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
271
structure length
271
Chain Sequence
MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHDDKALFLEYLQPLCPQLGSDANNMRCAVDDFATRLLFIDSSRAGTSKGWLTDETISWLEAQLFEGGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQYRQALISTLPGTVHQVPYCHADTDPYYDLSPASCLMHRQVGEQWVSYQHSLAHYAGPWLYDENISCPT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Phosphohydrolase
publication title Malonate-bound structure of the glycerophosphodiesterase from Enterobacter aerogenes (GpdQ) and characterization of the native Fe2+ metal-ion preference.
pubmed doi rcsb
source organism Enterobacter aerogenes
molecule tags Hydrolase
total genus 74
structure length 271
sequence length 271
chains with identical sequence C
ec nomenclature ec 3.1.4.46: Glycerophosphodiester phosphodiesterase.
pdb deposition date 2008-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.180 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA Transcription Regulator spoIIAA 2zo9B02
3.60.21.40 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2zo9B01
2DXNA 3D03A 2ZO9B 2DXLA 2ZOAA
chains in the Genus database with same CATH superfamily
3THOB 2BDXA 3ZU0A 4V0VA 4H2IA 2KLNA 5F3WA 1OIEA 3ZTBA 1HPUA 4I5NC 3V8VA 5EUXA 5HPEA 1HF2A 3E7BA 1H4XA 4V0XA 3ZXNA 1HP1A 4ORAA 5EUZA 4YKEA 4DMGA 1XZWA 4GHNA 1AUIA 4O5GA 2Q8UA 2IE4C 1V0EA 2Z72A 4FBQA 2GJUA 1T71A 3V97A 3VSEA 2DXNA 2VY9A 1IT6A 1S95A 3RQZA 3TGHA 1S3NA 5B8IA 2YVTA 5INBA 4HIZA 2DXLA 3H64A 4J6OA 4JA7A 4XS5A 3FLOA 2QFRA 4Q7FA 2CWWA 4H2BA 4O43A 3T1IA 3H67A 4TUGA 1MF8A 5JPEA 2AS0A 1KBPA 4LTYA 3IB8A 5EUSA 1OI8A 1WAO1 2ZOAA 3DJAA 3H60A 3IVDA 4HYLA 4O4KA 3H68A 3AGDA 1SU1A 3CK2A 4QTPA 1H4YA 3T6OA 4HD0A 4JA9A 2NPPC 3DW8C 5J28A 5EUUA 3IVEA 4ZX2A 3IF5A 2OASA 4L1CA 1SBOA 1N6FA 3H63A 4LU9A 4MOYA 5JPFA 3D3UA 3PSNA 4H2GA 1QFCA 2HYPA 4AEJA 1S70A 2KKNA 2ZO9B 4DGFA 2R17A 2USHA 3QFOA 2BQ8X 3RL5A 4ORCA 2HYOA 1II7A 3E0JA 3H62B 2P6BA 4IYPC 3OIZA 4M0VA 2O8AA 3QFMA 1TIDB 4I5LC 1N6DA 1THNB 1NNWA 2IE3C 2WDFA 4UT3A 2WDEA 3IH9A 3K50A 1G5BA 3K7VC 1UTEA 5GTUA 3V4YA 3FGAC 3JU4A 3QFNA 2Z06A 3LKLA 1UF3A 2BCDA 4FBKA 2CV9A 1T70A 5JJTA 4V0WA 1FCFA 3LDFA 3QDQA 1T6RA 2O8GA 4KBPA 4FBWA 3D03A 4ORBA 3NY7A 3HVQA 2ZBMA 3THNA 1WXWA 1FJMA 3C5WC 3IB7A 4OR9A 1V0FA 4IL1A 3GHFA 3C9FA 1M63A 2HY1A 3EGGA 1FC7A 4UT2A 2KA5A 2NXFA 1H4ZA 4LACC 1JK7A 3DSCA 2B78A 1AUZA 1HO5A 3C0KA 1WXXA 3MOGA 1S3MA 3GK7A 2AHDA 3KBPA 4H1SA 3AUZA 4DSYA 3QFKA 1Z2XA 1BPLA 3ICFA 3GMFA 3OIRA 1FC9A 3QG5C 3F43A 4B2OA 1USHA 5EQVA 1S3LA 2WDDA 5EZBA 2QJCA 5C1VA 3PSOA 5DNYA 3K7WC 3DUPA 5IOHA 4H2FA 3E7AA 1TCOA 4JC0A 2WDCA 1N6EA 3JYFA 4H1YP 4DT2A 4L8KA 4ZVZA 1BUZA 1QHWA 4AE2A 4XPNA 4WWLA 2NYMC 3N5UA 4DHLA 4UWQA 3MGLA 3GVLA 1XM7A 4MOVA 2IAEC 2Z1AA 4KKZA 4FCXA 3GVEA 1OIDA 2QFPA 1TH8B 3IHBA 3DORA 1V73A 2JOGA 2XMOA 3AV0A 2YEQA 3IH8A 3EGHA 1WARA 3EH7A 4G9JA 4MP0A 1VC1A 1TILB 4O24A 1W24A 3P71C 1J7XA 4DGHA 3LLOA 3IHAA 4F0ZA 3DSDA 5EUWA 1K32A 2NYLC 2A22A 3GVJA 1Z2WA 3H66A 3GVKA 1U32A 3H61A 3H69A 4TUIA 3LL8A 4UT3B 2RRLA 3RL3A 1S8EA 3ZTVA 2DFJA 1FC6A 4NZVA 3AGEA 3RL4A
chains in the Genus database with same CATH topology
3THOB 2BDXA 3ZU0A 4V0VA 4H2IA 5F3WA 1OIEA 4I5NC 1HPUA 5HPEA 3E7BA 4V0XA 1HP1A 4ORAA 4YKEA 1XZWA 4GHNA 1AUIA 4O5GA 2Q8UA 2IE4C 2Z72A 4FBQA 2GJUA 1T71A 2DXNA 1IT6A 3RQZA 3TGHA 5B8IA 1S3NA 2YVTA 5INBA 2DXLA 3H64A 4J6OA 4JA7A 3FLOA 2QFRA 4Q7FA 4H2BA 4O43A 3T1IA 3H67A 4TUGA 1MF8A 5JPEA 1KBPA 4LTYA 3IB8A 1OI8A 1WAO1 2ZOAA 3DJAA 3H60A 3IVDA 4O4KA 3H68A 1SU1A 3CK2A 4HD0A 4JA9A 2NPPC 3DW8C 5J28A 3IVEA 4ZX2A 3H63A 4L1CA 4LU9A 1N6FA 4MOYA 5JPFA 3PSNA 4H2GA 1QFCA 2HYPA 4AEJA 1S70A 2KKNA 2ZO9B 2R17A 2USHA 3QFOA 2BQ8X 3RL5A 4ORCA 2HYOA 1II7A 3E0JA 3H62B 2P6BA 4IYPC 4M0VA 2O8AA 3QFMA 4I5LC 1N6DA 1NNWA 2IE3C 2WDFA 4UT3A 2WDEA 3K7VC 3K50A 1G5BA 3V4YA 1UTEA 5GTUA 3FGAC 3QFNA 5JJTA 2Z06A 4FBKA 1UF3A 2BCDA 2CV9A 1T70A 4V0WA 1FCFA 4KBPA 2O8GA 4FBWA 3D03A 4ORBA 3HVQA 2ZBMA 3THNA 1FJMA 3IB7A 3C5WC 4OR9A 4IL1A 3GHFA 3C9FA 1M63A 2HY1A 3EGGA 1FC7A 4UT2A 2NXFA 4LACC 1JK7A 3DSCA 1HO5A 3MOGA 1S3MA 2AHDA 4H1SA 3KBPA 4DSYA 3AUZA 3QFKA 1Z2XA 1BPLA 3ICFA 3GMFA 1FC9A 3QG5C 4B2OA 1USHA 5EQVA 1S3LA 2WDDA 5C1VA 2QJCA 5DNYA 3PSOA 3K7WC 3DUPA 5IOHA 4H2FA 3E7AA 1TCOA 4JC0A 2WDCA 1N6EA 3JYFA 4H1YP 4DT2A 4L8KA 4ZVZA 1QHWA 4AE2A 4XPNA 4WWLA 2NYMC 3N5UA 4DHLA 1FC6A 4UWQA 1XM7A 4MOVA 2IAEC 2Z1AA 4KKZA 4FCXA 3GVEA 1OIDA 2QFPA 3DORA 1V73A 2JOGA 2XMOA 3AV0A 2YEQA 3EGHA 1WARA 4G9JA 4MP0A 4O24A 1W24A 3P71C 1J7XA 4F0ZA 3DSDA 1K32A 2NYLC 2A22A 3H66A 1Z2WA 3H69A 3H61A 1U32A 4TUIA 3LL8A 4UT3B 2RRLA 3RL3A 1S8EA 3ZTVA 2DFJA 1S95A 4NZVA 3RL4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DXN A;  3D03 A;  2ZO9 B;  2DXL A;  2ZOA A; 
#chains in the Genus database with same CATH topology
 3THO B;  2BDX A;  3ZU0 A;  4V0V A;  4H2I A;  2KLN A;  5F3W A;  1OIE A;  3ZTB A;  1HPU A;  4I5N C;  3V8V A;  5EUX A;  5HPE A;  1HF2 A;  3E7B A;  1H4X A;  4V0X A;  3ZXN A;  1HP1 A;  4ORA A;  5EUZ A;  4YKE A;  4DMG A;  1XZW A;  4GHN A;  1AUI A;  4O5G A;  2Q8U A;  2IE4 C;  1V0E A;  2Z72 A;  4FBQ A;  2GJU A;  1T71 A;  3V97 A;  3VSE A;  2DXN A;  2VY9 A;  1IT6 A;  1S95 A;  3RQZ A;  3TGH A;  1S3N A;  5B8I A;  2YVT A;  5INB A;  4HIZ A;  2DXL A;  3H64 A;  4J6O A;  4JA7 A;  4XS5 A;  3FLO A;  2QFR A;  4Q7F A;  2CWW A;  4H2B A;  4O43 A;  3T1I A;  3H67 A;  4TUG A;  1MF8 A;  5JPE A;  2AS0 A;  1KBP A;  4LTY A;  3IB8 A;  5EUS A;  1OI8 A;  1WAO 1;  2ZOA A;  3DJA A;  3H60 A;  3IVD A;  4HYL A;  4O4K A;  3H68 A;  3AGD A;  1SU1 A;  3CK2 A;  4QTP A;  1H4Y A;  3T6O A;  4HD0 A;  4JA9 A;  2NPP C;  3DW8 C;  5J28 A;  5EUU A;  3IVE A;  4ZX2 A;  3IF5 A;  2OAS A;  4L1C A;  1SBO A;  1N6F A;  3H63 A;  4LU9 A;  4MOY A;  5JPF A;  3D3U A;  3PSN A;  4H2G A;  1QFC A;  2HYP A;  4AEJ A;  1S70 A;  2KKN A;  2ZO9 B;  4DGF A;  2R17 A;  2USH A;  3QFO A;  2BQ8 X;  3RL5 A;  4ORC A;  2HYO A;  1II7 A;  3E0J A;  3H62 B;  2P6B A;  4IYP C;  3OIZ A;  4M0V A;  2O8A A;  3QFM A;  1TID B;  4I5L C;  1N6D A;  1THN B;  1NNW A;  2IE3 C;  2WDF A;  4UT3 A;  2WDE A;  3IH9 A;  3K50 A;  1G5B A;  3K7V C;  1UTE A;  5GTU A;  3V4Y A;  3FGA C;  3JU4 A;  3QFN A;  2Z06 A;  3LKL A;  1UF3 A;  2BCD A;  4FBK A;  2CV9 A;  1T70 A;  5JJT A;  4V0W A;  1FCF A;  3LDF A;  3QDQ A;  1T6R A;  2O8G A;  4KBP A;  4FBW A;  3D03 A;  4ORB A;  3NY7 A;  3HVQ A;  2ZBM A;  3THN A;  1WXW A;  1FJM A;  3C5W C;  3IB7 A;  4OR9 A;  1V0F A;  4IL1 A;  3GHF A;  3C9F A;  1M63 A;  2HY1 A;  3EGG A;  1FC7 A;  4UT2 A;  2KA5 A;  2NXF A;  1H4Z A;  4LAC C;  1JK7 A;  3DSC A;  2B78 A;  1AUZ A;  1HO5 A;  3C0K A;  1WXX A;  3MOG A;  1S3M A;  3GK7 A;  2AHD A;  3KBP A;  4H1S A;  3AUZ A;  4DSY A;  3QFK A;  1Z2X A;  1BPL A;  3ICF A;  3GMF A;  3OIR A;  1FC9 A;  3QG5 C;  3F43 A;  4B2O A;  1USH A;  5EQV A;  1S3L A;  2WDD A;  5EZB A;  2QJC A;  5C1V A;  3PSO A;  5DNY A;  3K7W C;  3DUP A;  5IOH A;  4H2F A;  3E7A A;  1TCO A;  4JC0 A;  2WDC A;  1N6E A;  3JYF A;  4H1Y P;  4DT2 A;  4L8K A;  4ZVZ A;  1BUZ A;  1QHW A;  4AE2 A;  4XPN A;  4WWL A;  2NYM C;  3N5U A;  4DHL A;  4UWQ A;  3MGL A;  3GVL A;  1XM7 A;  4MOV A;  2IAE C;  2Z1A A;  4KKZ A;  4FCX A;  3GVE A;  1OID A;  2QFP A;  1TH8 B;  3IHB A;  3DOR A;  1V73 A;  2JOG A;  2XMO A;  3AV0 A;  2YEQ A;  3IH8 A;  3EGH A;  1WAR A;  3EH7 A;  4G9J A;  4MP0 A;  1VC1 A;  1TIL B;  4O24 A;  1W24 A;  3P71 C;  1J7X A;  4DGH A;  3LLO A;  3IHA A;  4F0Z A;  3DSD A;  5EUW A;  1K32 A;  2NYL C;  2A22 A;  3GVJ A;  1Z2W A;  3H66 A;  3GVK A;  1U32 A;  3H61 A;  3H69 A;  4TUI A;  3LL8 A;  4UT3 B;  2RRL A;  3RL3 A;  1S8E A;  3ZTV A;  2DFJ A;  1FC6 A;  4NZV A;  3AGE A;  3RL4 A; 
#chains in the Genus database with same CATH homology
 3THO B;  2BDX A;  3ZU0 A;  4V0V A;  4H2I A;  5F3W A;  1OIE A;  4I5N C;  1HPU A;  5HPE A;  3E7B A;  4V0X A;  1HP1 A;  4ORA A;  4YKE A;  1XZW A;  4GHN A;  1AUI A;  4O5G A;  2Q8U A;  2IE4 C;  2Z72 A;  4FBQ A;  2GJU A;  1T71 A;  2DXN A;  1IT6 A;  3RQZ A;  3TGH A;  5B8I A;  1S3N A;  2YVT A;  5INB A;  2DXL A;  3H64 A;  4J6O A;  4JA7 A;  3FLO A;  2QFR A;  4Q7F A;  4H2B A;  4O43 A;  3T1I A;  3H67 A;  4TUG A;  1MF8 A;  5JPE A;  1KBP A;  4LTY A;  3IB8 A;  1OI8 A;  1WAO 1;  2ZOA A;  3DJA A;  3H60 A;  3IVD A;  4O4K A;  3H68 A;  1SU1 A;  3CK2 A;  4HD0 A;  4JA9 A;  2NPP C;  3DW8 C;  5J28 A;  3IVE A;  4ZX2 A;  3H63 A;  4L1C A;  4LU9 A;  1N6F A;  4MOY A;  5JPF A;  3PSN A;  4H2G A;  1QFC A;  2HYP A;  4AEJ A;  1S70 A;  2KKN A;  2ZO9 B;  2R17 A;  2USH A;  3QFO A;  2BQ8 X;  3RL5 A;  4ORC A;  2HYO A;  1II7 A;  3E0J A;  3H62 B;  2P6B A;  4IYP C;  4M0V A;  2O8A A;  3QFM A;  4I5L C;  1N6D A;  1NNW A;  2IE3 C;  2WDF A;  4UT3 A;  2WDE A;  3K7V C;  3K50 A;  1G5B A;  3V4Y A;  1UTE A;  5GTU A;  3FGA C;  3QFN A;  5JJT A;  2Z06 A;  4FBK A;  1UF3 A;  2BCD A;  2CV9 A;  1T70 A;  4V0W A;  1FCF A;  4KBP A;  2O8G A;  4FBW A;  3D03 A;  4ORB A;  3HVQ A;  2ZBM A;  3THN A;  1FJM A;  3IB7 A;  3C5W C;  4OR9 A;  4IL1 A;  3GHF A;  3C9F A;  1M63 A;  2HY1 A;  3EGG A;  1FC7 A;  4UT2 A;  2NXF A;  4LAC C;  1JK7 A;  3DSC A;  1HO5 A;  3MOG A;  1S3M A;  2AHD A;  4H1S A;  3KBP A;  4DSY A;  3AUZ A;  3QFK A;  1Z2X A;  1BPL A;  3ICF A;  3GMF A;  1FC9 A;  3QG5 C;  4B2O A;  1USH A;  5EQV A;  1S3L A;  2WDD A;  5C1V A;  2QJC A;  5DNY A;  3PSO A;  3K7W C;  3DUP A;  5IOH A;  4H2F A;  3E7A A;  1TCO A;  4JC0 A;  2WDC A;  1N6E A;  3JYF A;  4H1Y P;  4DT2 A;  4L8K A;  4ZVZ A;  1QHW A;  4AE2 A;  4XPN A;  4WWL A;  2NYM C;  3N5U A;  4DHL A;  1FC6 A;  4UWQ A;  1XM7 A;  4MOV A;  2IAE C;  2Z1A A;  4KKZ A;  4FCX A;  3GVE A;  1OID A;  2QFP A;  3DOR A;  1V73 A;  2JOG A;  2XMO A;  3AV0 A;  2YEQ A;  3EGH A;  1WAR A;  4G9J A;  4MP0 A;  4O24 A;  1W24 A;  3P71 C;  1J7X A;  4F0Z A;  3DSD A;  1K32 A;  2NYL C;  2A22 A;  3H66 A;  1Z2W A;  3H69 A;  3H61 A;  1U32 A;  4TUI A;  3LL8 A;  4UT3 B;  2RRL A;  3RL3 A;  1S8E A;  3ZTV A;  2DFJ A;  1S95 A;  4NZV A;  3RL4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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