2ZO9B

Malonate-bound structure of the glycerophosphodiesterase from enterobacter aerogenes (gpdq) and characterization of the native fe2+ metal ion preference
Total Genus 74
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
271
structure length
271
Chain Sequence
MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHDDKALFLEYLQPLCPQLGSDANNMRCAVDDFATRLLFIDSSRAGTSKGWLTDETISWLEAQLFEGGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQYRQALISTLPGTVHQVPYCHADTDPYYDLSPASCLMHRQVGEQWVSYQHSLAHYAGPWLYDENISCPT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Malonate-bound structure of the glycerophosphodiesterase from Enterobacter aerogenes (GpdQ) and characterization of the native Fe2+ metal-ion preference.
pubmed doi rcsb
source organism Enterobacter aerogenes
molecule tags Hydrolase
molecule keywords Phosphohydrolase
total genus 74
structure length 271
sequence length 271
chains with identical sequence C
ec nomenclature ec 3.1.4.46: Glycerophosphodiester phosphodiesterase.
pdb deposition date 2008-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.180 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA Transcription Regulator spoIIAA 2zo9B02
3.60.21.40 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2zo9B01
2ZO9B 3D03A 2DXNA 2ZOAA 2DXLA
chains in the Genus database with same CATH superfamily
3RQZA 5HPEA 2RRLA 4I5NC 1SU1A 1U32A 3KBPA 3EGGA 4AEJA 1OI8A 3AV0A 3LLOA 1OIDA 2CV9A 1JK7A 3DORA 2A22A 3PSOA 2NYLC 1TH8B 1S3NA 3RL3A 5JPFA 2O8GA 3LDFA 5JJTA 3AGDA 2IE3C 3C9FA 3T1IA 4G9JA 4Q7FA 4F0ZA 2YEQA 5EUZA 1G5BA 2JOGA 4HIZA 3EGHA 5EQVA 4UT2A 3LKLA 1AUIA 1HPUA 4FCXA 3ZTBA 5EUUA 4H1YP 1WARA 3IHAA 2DXLA 4H2IA 4V0VA 2WDCA 2WDEA 1T6RA 3EH7A 5B8IA 1HP1A 1TCOA 4UWQA 1TILB 4DGHA 1W24A 3DUPA 1Z2WA 3P71C 1FJMA 3IB8A 1II7A 2Z72A 3E7AA 3H66A 2YVTA 3QFOA 4UT3A 2KLNA 2R17A 2QFRA 4FBKA 4DT2A 1UF3A 5EUSA 4MOVA 3DSCA 4L8KA 1V73A 2HYPA 3GVLA 2USHA 3LL8A 1SBOA 4GHNA 1AUZA 3TGHA 5IOHA 2NYMC 1OIEA 4FBQA 4JC0A 1HF2A 1K32A 1HO5A 4H1SA 4M0VA 4MOYA 3IH9A 2Z1AA 3OIRA 1QHWA 2ZOAA 4YKEA 1USHA 1H4YA 3OIZA 2AHDA 3GVJA 3AUZA 3IF5A 2O8AA 4LTYA 2BDXA 1UTEA 1FC9A 3E0JA 2IE4C 5GTUA 3RL4A 2CWWA 3IB7A 4V0WA 1Z2XA 3K7WC 3CK2A 2DFJA 1S70A 2HYOA 5DNYA 2OASA 2BCDA 4V0XA 2B78A 3ZXNA 3IHBA 2KKNA 1M63A 3IVDA 3QFNA 4I5LC 3THOB 1NNWA 4TUGA 4H2BA 4AE2A 4O5GA 1H4ZA 1IT6A 3K50A 1FCFA 4HYLA 5EUWA 4ZVZA 4H2GA 2IAEC 1WXXA 3DSDA 4TUIA 3C0KA 3RL5A 1T70A 3ZU0A 5EUXA 4NZVA 2KA5A 3H64A 3H61A 1T71A 1FC7A 4FBWA 2AS0A 3FGAC 3H67A 4UT3B 3D3UA 4ORAA 3QDQA 1XZWA 3AGEA 1S3MA 3N5UA 1WAO1 3PSNA 1V0EA 1S8EA 4LACC 3E7BA 1BPLA 4H2FA 1V0FA 4QTPA 2ZBMA 3DW8C 2Z06A 3H69A 3H62B 3GVKA 4MP0A 4ORCA 4JA9A 1S95A 4J6OA 5J28A 4DMGA 4KKZA 3GK7A 3QG5C 1TIDB 3H68A 4L1CA 3F43A 4O4KA 4DSYA 1J7XA 1VC1A 3V8VA 3MOGA 2WDDA 3IH8A 5C1VA 2VY9A 4B2OA 4ORBA 2Q8UA 1N6FA 3VSEA 3HVQA 1KBPA 4LU9A 1WXWA 3JYFA 4WWLA 4IL1A 4XPNA 3C5WC 3GVEA 4O24A 3T6OA 3H60A 4JA7A 2ZO9B 1QFCA 3THNA 2P6BA 4O43A 1THNB 2NPPC 2QFPA 1FC6A 2DXNA 3D03A 4DGFA 3ICFA 3H63A 3GMFA 4OR9A 4XS5A 3K7VC 4ZX2A 3DJAA 1MF8A 1N6EA 2NXFA 2WDFA 3NY7A 3JU4A 2HY1A 4HD0A 1S3LA 3GHFA 1BUZA 1XM7A 3V97A 2QJCA 3MGLA 4DHLA 3FLOA 5INBA 5JPEA 5F3WA 4IYPC 3IVEA 3V4YA 2GJUA 5EZBA 3ZTVA 2XMOA 1H4XA 3QFKA 2BQ8X 1N6DA 4KBPA 3QFMA
chains in the Genus database with same CATH topology
3RQZA 5HPEA 2RRLA 4I5NC 1U32A 3KBPA 3EGGA 4AEJA 1OI8A 3AV0A 1OIDA 2CV9A 1JK7A 3DORA 2A22A 3PSOA 2NYLC 1S3NA 3RL3A 5JPFA 2O8GA 5JJTA 2IE3C 3C9FA 3T1IA 4G9JA 4Q7FA 4F0ZA 2YEQA 1G5BA 2JOGA 3EGHA 5EQVA 4UT2A 1AUIA 1HPUA 4FCXA 4H1YP 1WARA 2DXLA 4H2IA 4V0VA 2WDCA 2WDEA 5B8IA 1HP1A 1TCOA 4UWQA 1W24A 3DUPA 1Z2WA 3P71C 1FJMA 3IB8A 1II7A 2Z72A 3E7AA 3H66A 2YVTA 3QFOA 4UT3A 2R17A 2QFRA 4FBKA 4DT2A 1UF3A 4MOVA 3DSCA 4L8KA 1V73A 2HYPA 2USHA 3LL8A 4GHNA 3TGHA 5IOHA 2NYMC 1OIEA 4FBQA 4JC0A 1K32A 1HO5A 4H1SA 4M0VA 4MOYA 2Z1AA 1N6DA 1QHWA 2ZOAA 4YKEA 1USHA 2AHDA 3AUZA 2O8AA 4LTYA 2BDXA 1UTEA 1FC9A 3E0JA 2IE4C 5GTUA 3RL4A 3IB7A 4V0WA 1Z2XA 3K7WC 3CK2A 2DFJA 1S70A 2HYOA 5DNYA 2BCDA 4V0XA 2KKNA 3THOB 4I5LC 1M63A 3IVDA 3QFNA 4TUGA 1NNWA 4H2BA 4AE2A 4O5GA 1IT6A 3K50A 1FCFA 4ZVZA 4H2GA 2IAEC 3DSDA 4TUIA 3RL5A 1T70A 3ZU0A 4NZVA 3H64A 3H61A 1T71A 1FC7A 4FBWA 3FGAC 3H67A 4UT3B 4ORAA 1XZWA 1S3MA 3N5UA 1WAO1 3PSNA 1S8EA 4LACC 3E7BA 1BPLA 4H2FA 3DW8C 2ZBMA 4ORCA 2Z06A 3H69A 3H62B 4MP0A 4JA9A 1S95A 4J6OA 5J28A 4KKZA 3QG5C 3H68A 4L1CA 4DSYA 4O4KA 1J7XA 5C1VA 2WDDA 3MOGA 4B2OA 4ORBA 2Q8UA 1N6FA 3HVQA 1KBPA 4LU9A 3JYFA 4WWLA 4IL1A 4XPNA 3C5WC 3GVEA 4O24A 3H60A 4JA7A 2ZO9B 1QFCA 3THNA 2P6BA 4O43A 2NPPC 2QFPA 3D03A 1FC6A 2DXNA 3ICFA 4OR9A 3H63A 3GMFA 3K7VC 4ZX2A 3DJAA 1MF8A 1N6EA 2NXFA 2WDFA 2HY1A 4HD0A 1S3LA 3GHFA 1XM7A 2QJCA 4DHLA 5JPEA 3FLOA 5INBA 5F3WA 4IYPC 3IVEA 3V4YA 2GJUA 3ZTVA 2XMOA 3QFKA 2BQ8X 1SU1A 4KBPA 3QFMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZO9 B;  3D03 A;  2DXN A;  2ZOA A;  2DXL A; 
#chains in the Genus database with same CATH topology
 3RQZ A;  5HPE A;  2RRL A;  4I5N C;  1SU1 A;  1U32 A;  3KBP A;  3EGG A;  4AEJ A;  1OI8 A;  3AV0 A;  3LLO A;  1OID A;  2CV9 A;  1JK7 A;  3DOR A;  2A22 A;  3PSO A;  2NYL C;  1TH8 B;  1S3N A;  3RL3 A;  5JPF A;  2O8G A;  3LDF A;  5JJT A;  3AGD A;  2IE3 C;  3C9F A;  3T1I A;  4G9J A;  4Q7F A;  4F0Z A;  2YEQ A;  5EUZ A;  1G5B A;  2JOG A;  4HIZ A;  3EGH A;  5EQV A;  4UT2 A;  3LKL A;  1AUI A;  1HPU A;  4FCX A;  3ZTB A;  5EUU A;  4H1Y P;  1WAR A;  3IHA A;  2DXL A;  4H2I A;  4V0V A;  2WDC A;  2WDE A;  1T6R A;  3EH7 A;  5B8I A;  1HP1 A;  1TCO A;  4UWQ A;  1TIL B;  4DGH A;  1W24 A;  3DUP A;  1Z2W A;  3P71 C;  1FJM A;  3IB8 A;  1II7 A;  2Z72 A;  3E7A A;  3H66 A;  2YVT A;  3QFO A;  4UT3 A;  2KLN A;  2R17 A;  2QFR A;  4FBK A;  4DT2 A;  1UF3 A;  5EUS A;  4MOV A;  3DSC A;  4L8K A;  1V73 A;  2HYP A;  3GVL A;  2USH A;  3LL8 A;  1SBO A;  4GHN A;  1AUZ A;  3TGH A;  5IOH A;  2NYM C;  1OIE A;  4FBQ A;  4JC0 A;  1HF2 A;  1K32 A;  1HO5 A;  4H1S A;  4M0V A;  4MOY A;  3IH9 A;  2Z1A A;  3OIR A;  1QHW A;  2ZOA A;  4YKE A;  1USH A;  1H4Y A;  3OIZ A;  2AHD A;  3GVJ A;  3AUZ A;  3IF5 A;  2O8A A;  4LTY A;  2BDX A;  1UTE A;  1FC9 A;  3E0J A;  2IE4 C;  5GTU A;  3RL4 A;  2CWW A;  3IB7 A;  4V0W A;  1Z2X A;  3K7W C;  3CK2 A;  2DFJ A;  1S70 A;  2HYO A;  5DNY A;  2OAS A;  2BCD A;  4V0X A;  2B78 A;  3ZXN A;  3IHB A;  2KKN A;  1M63 A;  3IVD A;  3QFN A;  4I5L C;  3THO B;  1NNW A;  4TUG A;  4H2B A;  4AE2 A;  4O5G A;  1H4Z A;  1IT6 A;  3K50 A;  1FCF A;  4HYL A;  5EUW A;  4ZVZ A;  4H2G A;  2IAE C;  1WXX A;  3DSD A;  4TUI A;  3C0K A;  3RL5 A;  1T70 A;  3ZU0 A;  5EUX A;  4NZV A;  2KA5 A;  3H64 A;  3H61 A;  1T71 A;  1FC7 A;  4FBW A;  2AS0 A;  3FGA C;  3H67 A;  4UT3 B;  3D3U A;  4ORA A;  3QDQ A;  1XZW A;  3AGE A;  1S3M A;  3N5U A;  1WAO 1;  3PSN A;  1V0E A;  1S8E A;  4LAC C;  3E7B A;  1BPL A;  4H2F A;  1V0F A;  4QTP A;  2ZBM A;  3DW8 C;  2Z06 A;  3H69 A;  3H62 B;  3GVK A;  4MP0 A;  4ORC A;  4JA9 A;  1S95 A;  4J6O A;  5J28 A;  4DMG A;  4KKZ A;  3GK7 A;  3QG5 C;  1TID B;  3H68 A;  4L1C A;  3F43 A;  4O4K A;  4DSY A;  1J7X A;  1VC1 A;  3V8V A;  3MOG A;  2WDD A;  3IH8 A;  5C1V A;  2VY9 A;  4B2O A;  4ORB A;  2Q8U A;  1N6F A;  3VSE A;  3HVQ A;  1KBP A;  4LU9 A;  1WXW A;  3JYF A;  4WWL A;  4IL1 A;  4XPN A;  3C5W C;  3GVE A;  4O24 A;  3T6O A;  3H60 A;  4JA7 A;  2ZO9 B;  1QFC A;  3THN A;  2P6B A;  4O43 A;  1THN B;  2NPP C;  2QFP A;  1FC6 A;  2DXN A;  3D03 A;  4DGF A;  3ICF A;  3H63 A;  3GMF A;  4OR9 A;  4XS5 A;  3K7V C;  4ZX2 A;  3DJA A;  1MF8 A;  1N6E A;  2NXF A;  2WDF A;  3NY7 A;  3JU4 A;  2HY1 A;  4HD0 A;  1S3L A;  3GHF A;  1BUZ A;  1XM7 A;  3V97 A;  2QJC A;  3MGL A;  4DHL A;  3FLO A;  5INB A;  5JPE A;  5F3W A;  4IYP C;  3IVE A;  3V4Y A;  2GJU A;  5EZB A;  3ZTV A;  2XMO A;  1H4X A;  3QFK A;  2BQ8 X;  1N6D A;  4KBP A;  3QFM A; 
#chains in the Genus database with same CATH homology
 3RQZ A;  5HPE A;  2RRL A;  4I5N C;  1U32 A;  3KBP A;  3EGG A;  4AEJ A;  1OI8 A;  3AV0 A;  1OID A;  2CV9 A;  1JK7 A;  3DOR A;  2A22 A;  3PSO A;  2NYL C;  1S3N A;  3RL3 A;  5JPF A;  2O8G A;  5JJT A;  2IE3 C;  3C9F A;  3T1I A;  4G9J A;  4Q7F A;  4F0Z A;  2YEQ A;  1G5B A;  2JOG A;  3EGH A;  5EQV A;  4UT2 A;  1AUI A;  1HPU A;  4FCX A;  4H1Y P;  1WAR A;  2DXL A;  4H2I A;  4V0V A;  2WDC A;  2WDE A;  5B8I A;  1HP1 A;  1TCO A;  4UWQ A;  1W24 A;  3DUP A;  1Z2W A;  3P71 C;  1FJM A;  3IB8 A;  1II7 A;  2Z72 A;  3E7A A;  3H66 A;  2YVT A;  3QFO A;  4UT3 A;  2R17 A;  2QFR A;  4FBK A;  4DT2 A;  1UF3 A;  4MOV A;  3DSC A;  4L8K A;  1V73 A;  2HYP A;  2USH A;  3LL8 A;  4GHN A;  3TGH A;  5IOH A;  2NYM C;  1OIE A;  4FBQ A;  4JC0 A;  1K32 A;  1HO5 A;  4H1S A;  4M0V A;  4MOY A;  2Z1A A;  1N6D A;  1QHW A;  2ZOA A;  4YKE A;  1USH A;  2AHD A;  3AUZ A;  2O8A A;  4LTY A;  2BDX A;  1UTE A;  1FC9 A;  3E0J A;  2IE4 C;  5GTU A;  3RL4 A;  3IB7 A;  4V0W A;  1Z2X A;  3K7W C;  3CK2 A;  2DFJ A;  1S70 A;  2HYO A;  5DNY A;  2BCD A;  4V0X A;  2KKN A;  3THO B;  4I5L C;  1M63 A;  3IVD A;  3QFN A;  4TUG A;  1NNW A;  4H2B A;  4AE2 A;  4O5G A;  1IT6 A;  3K50 A;  1FCF A;  4ZVZ A;  4H2G A;  2IAE C;  3DSD A;  4TUI A;  3RL5 A;  1T70 A;  3ZU0 A;  4NZV A;  3H64 A;  3H61 A;  1T71 A;  1FC7 A;  4FBW A;  3FGA C;  3H67 A;  4UT3 B;  4ORA A;  1XZW A;  1S3M A;  3N5U A;  1WAO 1;  3PSN A;  1S8E A;  4LAC C;  3E7B A;  1BPL A;  4H2F A;  3DW8 C;  2ZBM A;  4ORC A;  2Z06 A;  3H69 A;  3H62 B;  4MP0 A;  4JA9 A;  1S95 A;  4J6O A;  5J28 A;  4KKZ A;  3QG5 C;  3H68 A;  4L1C A;  4DSY A;  4O4K A;  1J7X A;  5C1V A;  2WDD A;  3MOG A;  4B2O A;  4ORB A;  2Q8U A;  1N6F A;  3HVQ A;  1KBP A;  4LU9 A;  3JYF A;  4WWL A;  4IL1 A;  4XPN A;  3C5W C;  3GVE A;  4O24 A;  3H60 A;  4JA7 A;  2ZO9 B;  1QFC A;  3THN A;  2P6B A;  4O43 A;  2NPP C;  2QFP A;  3D03 A;  1FC6 A;  2DXN A;  3ICF A;  4OR9 A;  3H63 A;  3GMF A;  3K7V C;  4ZX2 A;  3DJA A;  1MF8 A;  1N6E A;  2NXF A;  2WDF A;  2HY1 A;  4HD0 A;  1S3L A;  3GHF A;  1XM7 A;  2QJC A;  4DHL A;  5JPE A;  3FLO A;  5INB A;  5F3W A;  4IYP C;  3IVE A;  3V4Y A;  2GJU A;  3ZTV A;  2XMO A;  3QFK A;  2BQ8 X;  1SU1 A;  4KBP A;  3QFM A; 
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similar chains in the Genus database (?% sequence similarity)
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#similar chains in the Genus database (?% sequence similarity)
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