2ZO9B

Malonate-bound structure of the glycerophosphodiesterase from enterobacter aerogenes (gpdq) and characterization of the native fe2+ metal ion preference
Total Genus 74
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
271
structure length
271
Chain Sequence
MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHDDKALFLEYLQPLCPQLGSDANNMRCAVDDFATRLLFIDSSRAGTSKGWLTDETISWLEAQLFEGGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQYRQALISTLPGTVHQVPYCHADTDPYYDLSPASCLMHRQVGEQWVSYQHSLAHYAGPWLYDENISCPT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Malonate-bound structure of the glycerophosphodiesterase from Enterobacter aerogenes (GpdQ) and characterization of the native Fe2+ metal-ion preference.
pubmed doi rcsb
source organism Enterobacter aerogenes
molecule tags Hydrolase
molecule keywords Phosphohydrolase
total genus 74
structure length 271
sequence length 271
chains with identical sequence C
ec nomenclature ec 3.1.4.46: Glycerophosphodiester phosphodiesterase.
pdb deposition date 2008-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.180 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA Transcription Regulator spoIIAA 2zo9B02
3.60.21.40 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2zo9B01
2DXLA 2DXNA 2ZO9B 3D03A 2ZOAA
chains in the Genus database with same CATH superfamily
3DORA 1OIEA 3EH7A 1XM7A 3THNA 1BUZA 4L8KA 2OASA 3QDQA 4JC0A 1XZWA 1HP1A 1U32A 1WAO1 4FBKA 2JOGA 4XPNA 2WDCA 1N6EA 3IHBA 3H69A 1AUZA 1HF2A 3T6OA 4HIZA 4DHLA 2NPPC 3IB7A 3IHAA 4ZVZA 3LKLA 1JK7A 1G5BA 5EUUA 1V73A 3OIRA 3DUPA 4O4KA 4XS5A 1BPLA 4JA9A 4HYLA 2DXLA 1UF3A 3H62B 2QJCA 3QFNA 3ZXNA 2YEQA 5JJTA 1N6DA 4I5NC 5EUSA 3QFKA 4H2GA 1QHWA 1N6FA 4H1SA 1MF8A 3C9FA 1THNB 2NXFA 3IH9A 3GMFA 3GHFA 3N5UA 4M0VA 2VY9A 3RL4A 3IF5A 3LL8A 1OI8A 3OIZA 3C5WC 3E7BA 4OR9A 4IYPC 1FCFA 1WXWA 2DFJA 3H64A 3PSOA 3FGAC 3QG5C 3E0JA 4H2IA 3LDFA 1VC1A 4JA7A 5EUZA 4AE2A 3H66A 2BCDA 3QFMA 3ZTVA 3C0KA 4MOYA 1WARA 3AV0A 3K7VC 5EQVA 3V4YA 5HPEA 5IOHA 3D3UA 3K50A 1SU1A 4TUGA 3AGDA 2HYPA 4IL1A 2IE3C 5C1VA 2BQ8X 3AUZA 2RRLA 1H4YA 3F43A 1II7A 3FLOA 1AUIA 1FJMA 3VSEA 3LLOA 3MOGA 4DSYA 5INBA 4YKEA 4G9JA 5GTUA 2CWWA 5DNYA 1S8EA 1HO5A 4V0XA 3PSNA 3V8VA 3DSDA 1V0EA 3GVEA 2CV9A 4H2BA 3CK2A 4FCXA 4HD0A 4I5LC 5F3WA 1IT6A 1TIDB 2HYOA 4KBPA 3RL3A 3MGLA 2ZO9B 2ZBMA 2QFRA 1T6RA 1M63A 3P71C 2WDFA 4FBQA 4TUIA 4Q7FA 3T1IA 4DT2A 2A22A 2KA5A 2WDDA 1UTEA 2R17A 1OIDA 1H4ZA 2DXNA 2Z72A 1V0FA 3H63A 2GJUA 3H60A 4QTPA 3QFOA 4MOVA 1J7XA 4NZVA 1QFCA 3HVQA 4B2OA 5EZBA 2NYMC 4H2FA 4UT3A 4O24A 5EUXA 4LU9A 1T71A 3AGEA 2IAEC 1FC9A 4ORBA 1TILB 4V0WA 2XMOA 2QFPA 1TH8B 4WWLA 2IE4C 4O43A 3THOB 2KLNA 3DSCA 2ZOAA 3GVJA 2O8GA 3NY7A 2Q8UA 4FBWA 3JU4A 3TGHA 5EUWA 5JPEA 4UWQA 2KKNA 3GK7A 3ZU0A 4GHNA 3V97A 2P6BA 3RL5A 1USHA 2BDXA 1S3MA 1S3NA 2Z1AA 5JPFA 1KBPA 3E7AA 4UT2A 2USHA 2NYLC 1K32A 1S95A 2O8AA 2B78A 2YVTA 4DGFA 2AHDA 3IH8A 4LTYA 3IB8A 1Z2XA 4ZX2A 1TCOA 1S3LA 1S70A 3IVDA 4V0VA 3H68A 4UT3B 2Z06A 4F0ZA 2AS0A 3GVLA 3EGHA 3K7WC 1FC7A 3RQZA 3H61A 3ICFA 1SBOA 3JYFA 2WDEA 1HPUA 4DGHA 1T70A 4DMGA 1NNWA 4J6OA 3D03A 4MP0A 1H4XA 3IVEA 4AEJA 4H1YP 4LACC 4L1CA 3EGGA 5J28A 3KBPA 1FC6A 1WXXA 4ORAA 4KKZA 1W24A 5B8IA 3GVKA 1Z2WA 3DJAA 3ZTBA 2HY1A 3H67A 4O5GA 3DW8C 4ORCA
chains in the Genus database with same CATH topology
3DORA 1OIEA 1XM7A 3THNA 4L8KA 4JC0A 1XZWA 1HP1A 1U32A 1WAO1 4FBKA 2JOGA 4XPNA 2WDCA 1N6EA 3H69A 4DHLA 2NPPC 3IB7A 4ZVZA 1JK7A 1G5BA 1V73A 3DUPA 4O4KA 1BPLA 4JA9A 1UF3A 2DXLA 3H62B 3QFNA 2QJCA 2YEQA 5JJTA 1N6DA 4I5NC 3QFKA 4H2GA 1QHWA 1N6FA 4H1SA 1MF8A 3C9FA 2NXFA 3GMFA 3GHFA 3N5UA 4M0VA 3RL4A 3LL8A 1OI8A 3E7BA 3C5WC 4OR9A 4IYPC 1FCFA 2DFJA 3H64A 3PSOA 3FGAC 3QG5C 3E0JA 4H2IA 4JA7A 4AE2A 3H66A 2BCDA 3QFMA 3ZTVA 4MOYA 1WARA 3AV0A 3K7VC 5EQVA 3V4YA 5HPEA 5IOHA 3K50A 1SU1A 4TUGA 2HYPA 4IL1A 2IE3C 5C1VA 2BQ8X 3AUZA 2RRLA 1II7A 3FLOA 1AUIA 1FJMA 5INBA 3MOGA 5DNYA 4DSYA 4YKEA 4G9JA 5GTUA 1S8EA 1HO5A 4V0XA 3PSNA 3DSDA 3GVEA 2CV9A 4H2BA 3CK2A 4FCXA 4HD0A 4I5LC 5F3WA 1IT6A 2HYOA 4KBPA 3RL3A 2ZO9B 2ZBMA 2QFRA 1M63A 3P71C 2WDFA 4FBQA 4TUIA 4Q7FA 3T1IA 4DT2A 2A22A 2WDDA 1UTEA 2R17A 1OIDA 2DXNA 2Z72A 3H63A 4NZVA 2GJUA 3H60A 3QFOA 4MOVA 4B2OA 1J7XA 1QFCA 3HVQA 2NYMC 4H2FA 4UT3A 4O24A 4LU9A 1T71A 2IAEC 1FC9A 4ORBA 4V0WA 2XMOA 2QFPA 4WWLA 2IE4C 4O43A 3THOB 3DSCA 2ZOAA 2O8GA 4FBWA 3TGHA 2Q8UA 5JPEA 4UWQA 2KKNA 3ZU0A 4GHNA 2P6BA 3RL5A 1USHA 2BDXA 1S3MA 1S3NA 2Z1AA 5JPFA 1KBPA 3E7AA 4UT2A 2USHA 2NYLC 1K32A 1S95A 2O8AA 2YVTA 2AHDA 4LTYA 3IB8A 1Z2XA 4ZX2A 1TCOA 1S3LA 1S70A 3IVDA 4V0VA 3H68A 4UT3B 2Z06A 4F0ZA 3K7WC 3EGHA 3RQZA 1FC7A 3H61A 3ICFA 3JYFA 2WDEA 1HPUA 1T70A 1NNWA 4J6OA 3D03A 4MP0A 3IVEA 4AEJA 4H1YP 4LACC 4L1CA 3EGGA 5J28A 3KBPA 1FC6A 4ORAA 4KKZA 1W24A 5B8IA 1Z2WA 3DJAA 3H67A 2HY1A 4O5GA 3DW8C 4ORCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DXL A;  2DXN A;  2ZO9 B;  3D03 A;  2ZOA A; 
#chains in the Genus database with same CATH topology
 3DOR A;  1OIE A;  3EH7 A;  1XM7 A;  3THN A;  1BUZ A;  4L8K A;  2OAS A;  3QDQ A;  4JC0 A;  1XZW A;  1HP1 A;  1U32 A;  1WAO 1;  4FBK A;  2JOG A;  4XPN A;  2WDC A;  1N6E A;  3IHB A;  3H69 A;  1AUZ A;  1HF2 A;  3T6O A;  4HIZ A;  4DHL A;  2NPP C;  3IB7 A;  3IHA A;  4ZVZ A;  3LKL A;  1JK7 A;  1G5B A;  5EUU A;  1V73 A;  3OIR A;  3DUP A;  4O4K A;  4XS5 A;  1BPL A;  4JA9 A;  4HYL A;  2DXL A;  1UF3 A;  3H62 B;  2QJC A;  3QFN A;  3ZXN A;  2YEQ A;  5JJT A;  1N6D A;  4I5N C;  5EUS A;  3QFK A;  4H2G A;  1QHW A;  1N6F A;  4H1S A;  1MF8 A;  3C9F A;  1THN B;  2NXF A;  3IH9 A;  3GMF A;  3GHF A;  3N5U A;  4M0V A;  2VY9 A;  3RL4 A;  3IF5 A;  3LL8 A;  1OI8 A;  3OIZ A;  3C5W C;  3E7B A;  4OR9 A;  4IYP C;  1FCF A;  1WXW A;  2DFJ A;  3H64 A;  3PSO A;  3FGA C;  3QG5 C;  3E0J A;  4H2I A;  3LDF A;  1VC1 A;  4JA7 A;  5EUZ A;  4AE2 A;  3H66 A;  2BCD A;  3QFM A;  3ZTV A;  3C0K A;  4MOY A;  1WAR A;  3AV0 A;  3K7V C;  5EQV A;  3V4Y A;  5HPE A;  5IOH A;  3D3U A;  3K50 A;  1SU1 A;  4TUG A;  3AGD A;  2HYP A;  4IL1 A;  2IE3 C;  5C1V A;  2BQ8 X;  3AUZ A;  2RRL A;  1H4Y A;  3F43 A;  1II7 A;  3FLO A;  1AUI A;  1FJM A;  3VSE A;  3LLO A;  3MOG A;  4DSY A;  5INB A;  4YKE A;  4G9J A;  5GTU A;  2CWW A;  5DNY A;  1S8E A;  1HO5 A;  4V0X A;  3PSN A;  3V8V A;  3DSD A;  1V0E A;  3GVE A;  2CV9 A;  4H2B A;  3CK2 A;  4FCX A;  4HD0 A;  4I5L C;  5F3W A;  1IT6 A;  1TID B;  2HYO A;  4KBP A;  3RL3 A;  3MGL A;  2ZO9 B;  2ZBM A;  2QFR A;  1T6R A;  1M63 A;  3P71 C;  2WDF A;  4FBQ A;  4TUI A;  4Q7F A;  3T1I A;  4DT2 A;  2A22 A;  2KA5 A;  2WDD A;  1UTE A;  2R17 A;  1OID A;  1H4Z A;  2DXN A;  2Z72 A;  1V0F A;  3H63 A;  2GJU A;  3H60 A;  4QTP A;  3QFO A;  4MOV A;  1J7X A;  4NZV A;  1QFC A;  3HVQ A;  4B2O A;  5EZB A;  2NYM C;  4H2F A;  4UT3 A;  4O24 A;  5EUX A;  4LU9 A;  1T71 A;  3AGE A;  2IAE C;  1FC9 A;  4ORB A;  1TIL B;  4V0W A;  2XMO A;  2QFP A;  1TH8 B;  4WWL A;  2IE4 C;  4O43 A;  3THO B;  2KLN A;  3DSC A;  2ZOA A;  3GVJ A;  2O8G A;  3NY7 A;  2Q8U A;  4FBW A;  3JU4 A;  3TGH A;  5EUW A;  5JPE A;  4UWQ A;  2KKN A;  3GK7 A;  3ZU0 A;  4GHN A;  3V97 A;  2P6B A;  3RL5 A;  1USH A;  2BDX A;  1S3M A;  1S3N A;  2Z1A A;  5JPF A;  1KBP A;  3E7A A;  4UT2 A;  2USH A;  2NYL C;  1K32 A;  1S95 A;  2O8A A;  2B78 A;  2YVT A;  4DGF A;  2AHD A;  3IH8 A;  4LTY A;  3IB8 A;  1Z2X A;  4ZX2 A;  1TCO A;  1S3L A;  1S70 A;  3IVD A;  4V0V A;  3H68 A;  4UT3 B;  2Z06 A;  4F0Z A;  2AS0 A;  3GVL A;  3EGH A;  3K7W C;  1FC7 A;  3RQZ A;  3H61 A;  3ICF A;  1SBO A;  3JYF A;  2WDE A;  1HPU A;  4DGH A;  1T70 A;  4DMG A;  1NNW A;  4J6O A;  3D03 A;  4MP0 A;  1H4X A;  3IVE A;  4AEJ A;  4H1Y P;  4LAC C;  4L1C A;  3EGG A;  5J28 A;  3KBP A;  1FC6 A;  1WXX A;  4ORA A;  4KKZ A;  1W24 A;  5B8I A;  3GVK A;  1Z2W A;  3DJA A;  3ZTB A;  2HY1 A;  3H67 A;  4O5G A;  3DW8 C;  4ORC A; 
#chains in the Genus database with same CATH homology
 3DOR A;  1OIE A;  1XM7 A;  3THN A;  4L8K A;  4JC0 A;  1XZW A;  1HP1 A;  1U32 A;  1WAO 1;  4FBK A;  2JOG A;  4XPN A;  2WDC A;  1N6E A;  3H69 A;  4DHL A;  2NPP C;  3IB7 A;  4ZVZ A;  1JK7 A;  1G5B A;  1V73 A;  3DUP A;  4O4K A;  1BPL A;  4JA9 A;  1UF3 A;  2DXL A;  3H62 B;  3QFN A;  2QJC A;  2YEQ A;  5JJT A;  1N6D A;  4I5N C;  3QFK A;  4H2G A;  1QHW A;  1N6F A;  4H1S A;  1MF8 A;  3C9F A;  2NXF A;  3GMF A;  3GHF A;  3N5U A;  4M0V A;  3RL4 A;  3LL8 A;  1OI8 A;  3E7B A;  3C5W C;  4OR9 A;  4IYP C;  1FCF A;  2DFJ A;  3H64 A;  3PSO A;  3FGA C;  3QG5 C;  3E0J A;  4H2I A;  4JA7 A;  4AE2 A;  3H66 A;  2BCD A;  3QFM A;  3ZTV A;  4MOY A;  1WAR A;  3AV0 A;  3K7V C;  5EQV A;  3V4Y A;  5HPE A;  5IOH A;  3K50 A;  1SU1 A;  4TUG A;  2HYP A;  4IL1 A;  2IE3 C;  5C1V A;  2BQ8 X;  3AUZ A;  2RRL A;  1II7 A;  3FLO A;  1AUI A;  1FJM A;  5INB A;  3MOG A;  5DNY A;  4DSY A;  4YKE A;  4G9J A;  5GTU A;  1S8E A;  1HO5 A;  4V0X A;  3PSN A;  3DSD A;  3GVE A;  2CV9 A;  4H2B A;  3CK2 A;  4FCX A;  4HD0 A;  4I5L C;  5F3W A;  1IT6 A;  2HYO A;  4KBP A;  3RL3 A;  2ZO9 B;  2ZBM A;  2QFR A;  1M63 A;  3P71 C;  2WDF A;  4FBQ A;  4TUI A;  4Q7F A;  3T1I A;  4DT2 A;  2A22 A;  2WDD A;  1UTE A;  2R17 A;  1OID A;  2DXN A;  2Z72 A;  3H63 A;  4NZV A;  2GJU A;  3H60 A;  3QFO A;  4MOV A;  4B2O A;  1J7X A;  1QFC A;  3HVQ A;  2NYM C;  4H2F A;  4UT3 A;  4O24 A;  4LU9 A;  1T71 A;  2IAE C;  1FC9 A;  4ORB A;  4V0W A;  2XMO A;  2QFP A;  4WWL A;  2IE4 C;  4O43 A;  3THO B;  3DSC A;  2ZOA A;  2O8G A;  4FBW A;  3TGH A;  2Q8U A;  5JPE A;  4UWQ A;  2KKN A;  3ZU0 A;  4GHN A;  2P6B A;  3RL5 A;  1USH A;  2BDX A;  1S3M A;  1S3N A;  2Z1A A;  5JPF A;  1KBP A;  3E7A A;  4UT2 A;  2USH A;  2NYL C;  1K32 A;  1S95 A;  2O8A A;  2YVT A;  2AHD A;  4LTY A;  3IB8 A;  1Z2X A;  4ZX2 A;  1TCO A;  1S3L A;  1S70 A;  3IVD A;  4V0V A;  3H68 A;  4UT3 B;  2Z06 A;  4F0Z A;  3K7W C;  3EGH A;  3RQZ A;  1FC7 A;  3H61 A;  3ICF A;  3JYF A;  2WDE A;  1HPU A;  1T70 A;  1NNW A;  4J6O A;  3D03 A;  4MP0 A;  3IVE A;  4AEJ A;  4H1Y P;  4LAC C;  4L1C A;  3EGG A;  5J28 A;  3KBP A;  1FC6 A;  4ORA A;  4KKZ A;  1W24 A;  5B8I A;  1Z2W A;  3DJA A;  3H67 A;  2HY1 A;  4O5G A;  3DW8 C;  4ORC A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...