2ZO9B

Malonate-bound structure of the glycerophosphodiesterase from enterobacter aerogenes (gpdq) and characterization of the native fe2+ metal ion preference
Total Genus 74
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
271
structure length
271
Chain Sequence
MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHDDKALFLEYLQPLCPQLGSDANNMRCAVDDFATRLLFIDSSRAGTSKGWLTDETISWLEAQLFEGGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQYRQALISTLPGTVHQVPYCHADTDPYYDLSPASCLMHRQVGEQWVSYQHSLAHYAGPWLYDENISCPT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Malonate-bound structure of the glycerophosphodiesterase from Enterobacter aerogenes (GpdQ) and characterization of the native Fe2+ metal-ion preference.
pubmed doi rcsb
molecule keywords Phosphohydrolase
source organism Enterobacter aerogenes
molecule tags Hydrolase
total genus 74
structure length 271
sequence length 271
chains with identical sequence C
ec nomenclature ec 3.1.4.46: Glycerophosphodiester phosphodiesterase.
pdb deposition date 2008-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.180 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA Transcription Regulator spoIIAA 2zo9B02
3.60.21.40 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2zo9B01
2ZO9B 2DXLA 3D03A 2ZOAA 2DXNA
chains in the Genus database with same CATH superfamily
1THNB 3FGAC 3EGHA 3LL8A 3ICFA 1N6DA 1IT6A 3PSNA 2Z1AA 1WARA 3DORA 1SU1A 2WDDA 5GTUA 1HPUA 3IH9A 3C0KA 5EZBA 2O8GA 3VSEA 1T6RA 3MOGA 4AE2A 4O5GA 5IOHA 4DT2A 1V0FA 4LTYA 2RRLA 2YVTA 3AV0A 5EUWA 1XZWA 1AUZA 2BCDA 2IE3C 1G5BA 3GHFA 2BDXA 5EUSA 3PSOA 2VY9A 2JOGA 3JYFA 4H2FA 3H69A 1FCFA 2AHDA 2NYLC 4JA7A 1S3NA 3ZTVA 1V0EA 1S3MA 2Z06A 1WXWA 3AUZA 3QG5C 4KKZA 1S95A 2KLNA 3DUPA 3GVJA 1S3LA 2QFPA 5JJTA 1Z2WA 4AEJA 3KBPA 3P71C 3QFOA 4I5LC 3IHBA 2NPPC 1TH8B 4ORAA 3EGGA 4OR9A 5INBA 3T6OA 3ZXNA 4HD0A 2CV9A 4J6OA 4MOYA 3DJAA 4LACC 4H2IA 2B78A 1TILB 3K50A 2USHA 3K7VC 4IL1A 3HVQA 4XS5A 2HYOA 4H2GA 2IAEC 4B2OA 4O43A 2ZOAA 4JA9A 4V0VA 3V4YA 4M0VA 4H1YP 4MP0A 3T1IA 5B8IA 4TUIA 3K7WC 3GK7A 2WDCA 2HYPA 4O24A 1V73A 3GMFA 3IVDA 2ZBMA 1H4ZA 2CWWA 1QHWA 1FJMA 2GJUA 4UT2A 3E7AA 4FCXA 2KKNA 3H60A 1WXXA 3DW8C 3EH7A 2Z72A 5EQVA 1FC6A 1FC9A 1U32A 2WDFA 4F0ZA 4DGHA 1HF2A 3V8VA 4LU9A 3QFKA 3RL3A 4ZX2A 5JPEA 3DSDA 1T71A 1AUIA 3IB7A 3H67A 2DXLA 2DFJA 3GVLA 2WDEA 1H4YA 3GVEA 3H64A 3QDQA 1NNWA 1S8EA 4TUGA 4DMGA 4FBKA 1K32A 1TIDB 3GVKA 1OIEA 1QFCA 3C5WC 4MOVA 1II7A 3IB8A 2NXFA 4H1SA 3D3UA 3DSCA 3E7BA 1FC7A 3V97A 2A22A 2QFRA 4L8KA 4KBPA 4ORBA 3H62B 1Z2XA 5EUXA 3IH8A 3N5UA 2XMOA 5F3WA 5C1VA 4DHLA 1W24A 1H4XA 5EUUA 1HO5A 1OI8A 1WAO1 4GHNA 1BUZA 4DGFA 1S70A 2O8AA 3H63A 4IYPC 3CK2A 3AGEA 4NZVA 3RQZA 1M63A 1UTEA 2HY1A 4UT3B 4ZVZA 3FLOA 3E0JA 4FBWA 4ORCA 5DNYA 3F43A 2QJCA 3ZU0A 1UF3A 2YEQA 1JK7A 4V0XA 1N6FA 3H68A 4H2BA 5JPFA 3RL5A 4L1CA 3QFNA 2NYMC 2ZO9B 3IVEA 3THOB 3LKLA 4QTPA 4UT3A 5HPEA 4I5NC 1J7XA 3NY7A 4HYLA 4DSYA 5J28A 4YKEA 1SBOA 4Q7FA 3THNA 3MGLA 2P6BA 3C9FA 3D03A 2BQ8X 4JC0A 3OIZA 1N6EA 1OIDA 1XM7A 4WWLA 2AS0A 3IF5A 2KA5A 3H61A 1VC1A 1MF8A 3IHAA 1HP1A 3LDFA 1TCOA 3AGDA 4FBQA 2Q8UA 3TGHA 2IE4C 1BPLA 3LLOA 5EUZA 2R17A 4O4KA 3OIRA 4XPNA 3RL4A 2OASA 3QFMA 1USHA 3JU4A 4UWQA 4G9JA 4HIZA 1KBPA 3ZTBA 3H66A 1T70A 2DXNA 4V0WA
chains in the Genus database with same CATH topology
3FGAC 3LL8A 3EGHA 3ICFA 1N6DA 1IT6A 3PSNA 2Z1AA 1WARA 3DORA 1SU1A 2WDDA 5GTUA 1HPUA 2O8GA 4O5GA 3MOGA 4AE2A 5IOHA 4DT2A 4LTYA 2RRLA 2YVTA 3AV0A 1XZWA 2IE3C 2BCDA 1G5BA 3GHFA 2BDXA 3PSOA 2JOGA 3JYFA 4H2FA 3H69A 1FCFA 2AHDA 2NYLC 4JA7A 1S3NA 3ZTVA 1S3MA 2Z06A 3AUZA 3QG5C 4KKZA 1S95A 3DUPA 1S3LA 2QFPA 5JJTA 1Z2WA 4AEJA 3KBPA 3P71C 3QFOA 4I5LC 2NPPC 4ORAA 3EGGA 4OR9A 5INBA 4J6OA 4HD0A 2CV9A 4MOYA 3DJAA 4LACC 4H2IA 3K50A 1KBPA 2USHA 3K7VC 4IL1A 3HVQA 4B2OA 2HYOA 4H2GA 2IAEC 4O43A 2ZOAA 4JA9A 4V0VA 3V4YA 4M0VA 4H1YP 4MP0A 3T1IA 5B8IA 4TUIA 3K7WC 2WDCA 2HYPA 4O24A 1V73A 3GMFA 3IVDA 2ZBMA 1QHWA 2GJUA 1FJMA 4UT2A 3E7AA 4FCXA 2KKNA 3H60A 3DW8C 2Z72A 5EQVA 4F0ZA 1FC9A 1FC6A 1U32A 2WDFA 4ZX2A 5JPEA 3DSDA 3RL3A 4LU9A 3QFKA 1AUIA 3IB7A 3H67A 2DXLA 2DFJA 2WDEA 3GVEA 3H64A 1S8EA 1NNWA 4TUGA 4FBKA 1K32A 1OIEA 1QFCA 3C5WC 4MOVA 1II7A 3IB8A 2NXFA 4H1SA 3DSCA 3E7BA 1FC7A 4KBPA 2A22A 2QFRA 4L8KA 4ORBA 3H62B 1Z2XA 3N5UA 2XMOA 5F3WA 5C1VA 4DHLA 1W24A 1HO5A 1OI8A 1WAO1 4GHNA 2O8AA 1S70A 3H63A 4IYPC 3CK2A 4NZVA 3RQZA 1M63A 1UTEA 2HY1A 4UT3B 4ZVZA 3FLOA 3E0JA 4FBWA 4ORCA 5DNYA 2QJCA 3ZU0A 1UF3A 2YEQA 1JK7A 4V0XA 1N6FA 3H68A 4H2BA 5JPFA 3RL5A 4L1CA 3QFNA 2NYMC 2ZO9B 3IVEA 3THOB 4UT3A 5HPEA 4I5NC 1J7XA 4DSYA 5J28A 4YKEA 4Q7FA 3THNA 2P6BA 3C9FA 3D03A 2BQ8X 4JC0A 1N6EA 1OIDA 1XM7A 4WWLA 3H61A 1MF8A 1HP1A 1TCOA 4FBQA 2Q8UA 3TGHA 2IE4C 1BPLA 2R17A 4O4KA 4XPNA 3RL4A 3QFMA 1USHA 4UWQA 4G9JA 1T71A 3H66A 1T70A 2DXNA 4V0WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZO9 B;  2DXL A;  3D03 A;  2ZOA A;  2DXN A; 
#chains in the Genus database with same CATH topology
 1THN B;  3FGA C;  3EGH A;  3LL8 A;  3ICF A;  1N6D A;  1IT6 A;  3PSN A;  2Z1A A;  1WAR A;  3DOR A;  1SU1 A;  2WDD A;  5GTU A;  1HPU A;  3IH9 A;  3C0K A;  5EZB A;  2O8G A;  3VSE A;  1T6R A;  3MOG A;  4AE2 A;  4O5G A;  5IOH A;  4DT2 A;  1V0F A;  4LTY A;  2RRL A;  2YVT A;  3AV0 A;  5EUW A;  1XZW A;  1AUZ A;  2BCD A;  2IE3 C;  1G5B A;  3GHF A;  2BDX A;  5EUS A;  3PSO A;  2VY9 A;  2JOG A;  3JYF A;  4H2F A;  3H69 A;  1FCF A;  2AHD A;  2NYL C;  4JA7 A;  1S3N A;  3ZTV A;  1V0E A;  1S3M A;  2Z06 A;  1WXW A;  3AUZ A;  3QG5 C;  4KKZ A;  1S95 A;  2KLN A;  3DUP A;  3GVJ A;  1S3L A;  2QFP A;  5JJT A;  1Z2W A;  4AEJ A;  3KBP A;  3P71 C;  3QFO A;  4I5L C;  3IHB A;  2NPP C;  1TH8 B;  4ORA A;  3EGG A;  4OR9 A;  5INB A;  3T6O A;  3ZXN A;  4HD0 A;  2CV9 A;  4J6O A;  4MOY A;  3DJA A;  4LAC C;  4H2I A;  2B78 A;  1TIL B;  3K50 A;  2USH A;  3K7V C;  4IL1 A;  3HVQ A;  4XS5 A;  2HYO A;  4H2G A;  2IAE C;  4B2O A;  4O43 A;  2ZOA A;  4JA9 A;  4V0V A;  3V4Y A;  4M0V A;  4H1Y P;  4MP0 A;  3T1I A;  5B8I A;  4TUI A;  3K7W C;  3GK7 A;  2WDC A;  2HYP A;  4O24 A;  1V73 A;  3GMF A;  3IVD A;  2ZBM A;  1H4Z A;  2CWW A;  1QHW A;  1FJM A;  2GJU A;  4UT2 A;  3E7A A;  4FCX A;  2KKN A;  3H60 A;  1WXX A;  3DW8 C;  3EH7 A;  2Z72 A;  5EQV A;  1FC6 A;  1FC9 A;  1U32 A;  2WDF A;  4F0Z A;  4DGH A;  1HF2 A;  3V8V A;  4LU9 A;  3QFK A;  3RL3 A;  4ZX2 A;  5JPE A;  3DSD A;  1T71 A;  1AUI A;  3IB7 A;  3H67 A;  2DXL A;  2DFJ A;  3GVL A;  2WDE A;  1H4Y A;  3GVE A;  3H64 A;  3QDQ A;  1NNW A;  1S8E A;  4TUG A;  4DMG A;  4FBK A;  1K32 A;  1TID B;  3GVK A;  1OIE A;  1QFC A;  3C5W C;  4MOV A;  1II7 A;  3IB8 A;  2NXF A;  4H1S A;  3D3U A;  3DSC A;  3E7B A;  1FC7 A;  3V97 A;  2A22 A;  2QFR A;  4L8K A;  4KBP A;  4ORB A;  3H62 B;  1Z2X A;  5EUX A;  3IH8 A;  3N5U A;  2XMO A;  5F3W A;  5C1V A;  4DHL A;  1W24 A;  1H4X A;  5EUU A;  1HO5 A;  1OI8 A;  1WAO 1;  4GHN A;  1BUZ A;  4DGF A;  1S70 A;  2O8A A;  3H63 A;  4IYP C;  3CK2 A;  3AGE A;  4NZV A;  3RQZ A;  1M63 A;  1UTE A;  2HY1 A;  4UT3 B;  4ZVZ A;  3FLO A;  3E0J A;  4FBW A;  4ORC A;  5DNY A;  3F43 A;  2QJC A;  3ZU0 A;  1UF3 A;  2YEQ A;  1JK7 A;  4V0X A;  1N6F A;  3H68 A;  4H2B A;  5JPF A;  3RL5 A;  4L1C A;  3QFN A;  2NYM C;  2ZO9 B;  3IVE A;  3THO B;  3LKL A;  4QTP A;  4UT3 A;  5HPE A;  4I5N C;  1J7X A;  3NY7 A;  4HYL A;  4DSY A;  5J28 A;  4YKE A;  1SBO A;  4Q7F A;  3THN A;  3MGL A;  2P6B A;  3C9F A;  3D03 A;  2BQ8 X;  4JC0 A;  3OIZ A;  1N6E A;  1OID A;  1XM7 A;  4WWL A;  2AS0 A;  3IF5 A;  2KA5 A;  3H61 A;  1VC1 A;  1MF8 A;  3IHA A;  1HP1 A;  3LDF A;  1TCO A;  3AGD A;  4FBQ A;  2Q8U A;  3TGH A;  2IE4 C;  1BPL A;  3LLO A;  5EUZ A;  2R17 A;  4O4K A;  3OIR A;  4XPN A;  3RL4 A;  2OAS A;  3QFM A;  1USH A;  3JU4 A;  4UWQ A;  4G9J A;  4HIZ A;  1KBP A;  3ZTB A;  3H66 A;  1T70 A;  2DXN A;  4V0W A; 
#chains in the Genus database with same CATH homology
 3FGA C;  3LL8 A;  3EGH A;  3ICF A;  1N6D A;  1IT6 A;  3PSN A;  2Z1A A;  1WAR A;  3DOR A;  1SU1 A;  2WDD A;  5GTU A;  1HPU A;  2O8G A;  4O5G A;  3MOG A;  4AE2 A;  5IOH A;  4DT2 A;  4LTY A;  2RRL A;  2YVT A;  3AV0 A;  1XZW A;  2IE3 C;  2BCD A;  1G5B A;  3GHF A;  2BDX A;  3PSO A;  2JOG A;  3JYF A;  4H2F A;  3H69 A;  1FCF A;  2AHD A;  2NYL C;  4JA7 A;  1S3N A;  3ZTV A;  1S3M A;  2Z06 A;  3AUZ A;  3QG5 C;  4KKZ A;  1S95 A;  3DUP A;  1S3L A;  2QFP A;  5JJT A;  1Z2W A;  4AEJ A;  3KBP A;  3P71 C;  3QFO A;  4I5L C;  2NPP C;  4ORA A;  3EGG A;  4OR9 A;  5INB A;  4J6O A;  4HD0 A;  2CV9 A;  4MOY A;  3DJA A;  4LAC C;  4H2I A;  3K50 A;  1KBP A;  2USH A;  3K7V C;  4IL1 A;  3HVQ A;  4B2O A;  2HYO A;  4H2G A;  2IAE C;  4O43 A;  2ZOA A;  4JA9 A;  4V0V A;  3V4Y A;  4M0V A;  4H1Y P;  4MP0 A;  3T1I A;  5B8I A;  4TUI A;  3K7W C;  2WDC A;  2HYP A;  4O24 A;  1V73 A;  3GMF A;  3IVD A;  2ZBM A;  1QHW A;  2GJU A;  1FJM A;  4UT2 A;  3E7A A;  4FCX A;  2KKN A;  3H60 A;  3DW8 C;  2Z72 A;  5EQV A;  4F0Z A;  1FC9 A;  1FC6 A;  1U32 A;  2WDF A;  4ZX2 A;  5JPE A;  3DSD A;  3RL3 A;  4LU9 A;  3QFK A;  1AUI A;  3IB7 A;  3H67 A;  2DXL A;  2DFJ A;  2WDE A;  3GVE A;  3H64 A;  1S8E A;  1NNW A;  4TUG A;  4FBK A;  1K32 A;  1OIE A;  1QFC A;  3C5W C;  4MOV A;  1II7 A;  3IB8 A;  2NXF A;  4H1S A;  3DSC A;  3E7B A;  1FC7 A;  4KBP A;  2A22 A;  2QFR A;  4L8K A;  4ORB A;  3H62 B;  1Z2X A;  3N5U A;  2XMO A;  5F3W A;  5C1V A;  4DHL A;  1W24 A;  1HO5 A;  1OI8 A;  1WAO 1;  4GHN A;  2O8A A;  1S70 A;  3H63 A;  4IYP C;  3CK2 A;  4NZV A;  3RQZ A;  1M63 A;  1UTE A;  2HY1 A;  4UT3 B;  4ZVZ A;  3FLO A;  3E0J A;  4FBW A;  4ORC A;  5DNY A;  2QJC A;  3ZU0 A;  1UF3 A;  2YEQ A;  1JK7 A;  4V0X A;  1N6F A;  3H68 A;  4H2B A;  5JPF A;  3RL5 A;  4L1C A;  3QFN A;  2NYM C;  2ZO9 B;  3IVE A;  3THO B;  4UT3 A;  5HPE A;  4I5N C;  1J7X A;  4DSY A;  5J28 A;  4YKE A;  4Q7F A;  3THN A;  2P6B A;  3C9F A;  3D03 A;  2BQ8 X;  4JC0 A;  1N6E A;  1OID A;  1XM7 A;  4WWL A;  3H61 A;  1MF8 A;  1HP1 A;  1TCO A;  4FBQ A;  2Q8U A;  3TGH A;  2IE4 C;  1BPL A;  2R17 A;  4O4K A;  4XPN A;  3RL4 A;  3QFM A;  1USH A;  4UWQ A;  4G9J A;  1T71 A;  3H66 A;  1T70 A;  2DXN A;  4V0W A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...