2ZO9B

Malonate-bound structure of the glycerophosphodiesterase from enterobacter aerogenes (gpdq) and characterization of the native fe2+ metal ion preference
Total Genus 74
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
271
structure length
271
Chain Sequence
MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHDDKALFLEYLQPLCPQLGSDANNMRCAVDDFATRLLFIDSSRAGTSKGWLTDETISWLEAQLFEGGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQYRQALISTLPGTVHQVPYCHADTDPYYDLSPASCLMHRQVGEQWVSYQHSLAHYAGPWLYDENISCPT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Enterobacter aerogenes
publication title Malonate-bound structure of the glycerophosphodiesterase from Enterobacter aerogenes (GpdQ) and characterization of the native Fe2+ metal-ion preference.
pubmed doi rcsb
molecule keywords Phosphohydrolase
total genus 74
structure length 271
sequence length 271
chains with identical sequence C
ec nomenclature ec 3.1.4.46: Glycerophosphodiester phosphodiesterase.
pdb deposition date 2008-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.180 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA Transcription Regulator spoIIAA 2zo9B02
3.60.21.40 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2zo9B01
2ZOAA 3D03A 2ZO9B 2DXNA 2DXLA
chains in the Genus database with same CATH superfamily
1NNWA 1K32A 3IB7A 3PSOA 3THOB 4JC0A 1H4ZA 1G5BA 4L1CA 1FCFA 1N6FA 3IHAA 4HD0A 1VC1A 5EUWA 3HVQA 5JJTA 2USHA 2B78A 4M0VA 3T6OA 4O43A 5JPFA 2WDEA 3E0JA 3D03A 1IT6A 3LKLA 4XPNA 4AEJA 4QTPA 2Q8UA 3GK7A 1V73A 4MOYA 1UF3A 2AHDA 1MF8A 1Z2XA 4H2BA 4V0XA 3IH8A 3LL8A 4IYPC 2DXNA 1II7A 4MOVA 3GVJA 5B8IA 5DNYA 3GHFA 2ZBMA 3ZU0A 4HIZA 1V0FA 3C5WC 3H62B 1S95A 3GVEA 3AGDA 5EUXA 1Z2WA 2O8GA 4O4KA 2ZO9B 2IE3C 1M63A 4JA9A 4UT3B 3THNA 4GHNA 2A22A 3RQZA 2CWWA 1THNB 1S3MA 3ICFA 1JK7A 3H67A 1SBOA 4Q7FA 3NY7A 4AE2A 2IE4C 2R17A 1T6RA 2DXLA 1BPLA 3GMFA 1HP1A 3C9FA 3FGAC 4OR9A 3OIZA 1WXXA 1J7XA 2VY9A 2KKNA 1HF2A 3T1IA 3QFNA 2WDDA 3QFMA 3IH9A 1AUZA 3K7WC 1FC7A 1V0EA 2O8AA 3RL5A 3EGHA 4LU9A 1U32A 4HYLA 3DJAA 1TH8B 2ZOAA 3QDQA 4XS5A 1SU1A 1FC9A 2QFPA 3CK2A 3DW8C 3TGHA 3JU4A 5INBA 4J6OA 2OASA 3QFOA 5J28A 3IHBA 3RL4A 3H63A 4H2IA 3PSNA 3GVLA 3E7BA 4B2OA 5EZBA 4IL1A 1H4YA 4V0VA 4ORAA 2KA5A 4LACC 4ORCA 1S3LA 1BUZA 3AUZA 1S3NA 4I5NC 4F0ZA 1FC6A 3ZTVA 1TILB 4DMGA 1QHWA 3H60A 4FCXA 5GTUA 1QFCA 3D3UA 3H69A 4FBWA 3H68A 4FBKA 3LLOA 4FBQA 2HYPA 2Z06A 4H1YP 3N5UA 3DORA 4V0WA 1UTEA 3F43A 3H61A 4O5GA 3VSEA 3K50A 4ZVZA 4DSYA 3RL3A 1USHA 4UT2A 3V4YA 1OI8A 4I5LC 3EH7A 2AS0A 4H2FA 4NZVA 4YKEA 2GJUA 2YEQA 1HO5A 4TUIA 1XZWA 3DSDA 3H66A 2WDFA 1XM7A 4KBPA 4ORBA 5IOHA 1TIDB 2CV9A 5EUSA 1OIEA 3IB8A 1WAO1 5EQVA 2NYLC 5EUUA 1FJMA 3P71C 2HY1A 1KBPA 4G9JA 3AGEA 3C0KA 1W24A 1WARA 3LDFA 3FLOA 4JA7A 4KKZA 3MGLA 5HPEA 4O24A 1N6DA 4L8KA 2BDXA 3QG5C 4UT3A 3KBPA 5F3WA 3EGGA 4UWQA 2QFRA 2DFJA 2YVTA 3ZTBA 4H1SA 1N6EA 1TCOA 1H4XA 2P6BA 3QFKA 1S8EA 2WDCA 3IF5A 3MOGA 2NYMC 3IVEA 4DHLA 4DT2A 3ZXNA 1S70A 3DSCA 2JOGA 3JYFA 3K7VC 2IAEC 1HPUA 3V97A 4H2GA 3OIRA 4WWLA 4DGFA 2Z72A 2NXFA 4LTYA 5EUZA 1OIDA 2XMOA 2NPPC 1T71A 1WXWA 3H64A 4MP0A 5C1VA 3V8VA 2BQ8X 5JPEA 3E7AA 4ZX2A 2BCDA 1T70A 4TUGA 4DGHA 3IVDA 2KLNA 3DUPA 2QJCA 2Z1AA 1AUIA 3GVKA 2HYOA 2RRLA 3AV0A
chains in the Genus database with same CATH topology
1NNWA 1K32A 3IB7A 3PSOA 3THOB 4JC0A 1G5BA 4L1CA 1FCFA 1N6FA 4HD0A 3HVQA 5JJTA 2USHA 4M0VA 4O43A 5JPFA 2WDEA 3E0JA 3D03A 1IT6A 4XPNA 4AEJA 2Q8UA 1V73A 4MOYA 1UF3A 2AHDA 1MF8A 1Z2XA 4H2BA 4V0XA 4IYPC 3LL8A 2DXNA 1II7A 4MOVA 5B8IA 5DNYA 3GHFA 2ZBMA 3ZU0A 3C5WC 3H62B 1S95A 3GVEA 2O8GA 1Z2WA 4O4KA 3RL3A 3THNA 2ZO9B 2IE3C 1M63A 4JA9A 4UT3B 4GHNA 2A22A 3RQZA 1S3MA 3ICFA 1JK7A 3H67A 4Q7FA 4AE2A 2IE4C 2R17A 2DXLA 3C9FA 1BPLA 3GMFA 1HP1A 3FGAC 4OR9A 3ZTVA 1J7XA 2KKNA 3T1IA 3QFNA 2WDDA 3QFMA 3K7WC 1FC7A 2O8AA 3RL5A 3EGHA 4LU9A 1U32A 3DJAA 2ZOAA 3TGHA 1SU1A 1FC9A 2QFPA 3CK2A 3DW8C 5INBA 4J6OA 5J28A 3QFOA 3RL4A 3H63A 4H2IA 3PSNA 3E7BA 4B2OA 4IL1A 4V0VA 4ORAA 4ORCA 4LACC 1S3LA 3AUZA 1S3NA 4I5NC 4F0ZA 1FC6A 1QHWA 4FCXA 5GTUA 3H60A 1QFCA 3H69A 4FBWA 3H68A 4FBKA 4FBQA 2HYPA 2Z06A 4H1YP 3N5UA 3DORA 4V0WA 1UTEA 3H61A 4O5GA 4ZVZA 3K50A 4DSYA 1USHA 4UT2A 3V4YA 1OI8A 4I5LC 4H2FA 4NZVA 4YKEA 2GJUA 2YEQA 1HO5A 4TUIA 1XZWA 3DSDA 3H66A 2WDFA 1XM7A 4KBPA 4ORBA 5IOHA 2CV9A 1OIEA 3IB8A 1WAO1 5EQVA 2NYLC 1FJMA 3P71C 4G9JA 2HY1A 1KBPA 5JPEA 3FLOA 1W24A 1WARA 4JA7A 4KKZA 5HPEA 1N6DA 4L8KA 2BDXA 3QG5C 4UT3A 3KBPA 5F3WA 3EGGA 4UWQA 2QFRA 2DFJA 2YVTA 4H1SA 1N6EA 1TCOA 2P6BA 3QFKA 4O24A 1S8EA 2WDCA 2NYMC 3MOGA 3IVEA 4DHLA 4DT2A 1S70A 3DSCA 2JOGA 3JYFA 3K7VC 2IAEC 1HPUA 4H2GA 4WWLA 2Z72A 2NXFA 4LTYA 1OIDA 2XMOA 2NPPC 1T71A 4MP0A 3H64A 5C1VA 2BQ8X 3E7AA 4ZX2A 2BCDA 1T70A 4TUGA 3IVDA 3DUPA 2QJCA 2Z1AA 1AUIA 2HYOA 2RRLA 3AV0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZOA A;  3D03 A;  2ZO9 B;  2DXN A;  2DXL A; 
#chains in the Genus database with same CATH topology
 1NNW A;  1K32 A;  3IB7 A;  3PSO A;  3THO B;  4JC0 A;  1H4Z A;  1G5B A;  4L1C A;  1FCF A;  1N6F A;  3IHA A;  4HD0 A;  1VC1 A;  5EUW A;  3HVQ A;  5JJT A;  2USH A;  2B78 A;  4M0V A;  3T6O A;  4O43 A;  5JPF A;  2WDE A;  3E0J A;  3D03 A;  1IT6 A;  3LKL A;  4XPN A;  4AEJ A;  4QTP A;  2Q8U A;  3GK7 A;  1V73 A;  4MOY A;  1UF3 A;  2AHD A;  1MF8 A;  1Z2X A;  4H2B A;  4V0X A;  3IH8 A;  3LL8 A;  4IYP C;  2DXN A;  1II7 A;  4MOV A;  3GVJ A;  5B8I A;  5DNY A;  3GHF A;  2ZBM A;  3ZU0 A;  4HIZ A;  1V0F A;  3C5W C;  3H62 B;  1S95 A;  3GVE A;  3AGD A;  5EUX A;  1Z2W A;  2O8G A;  4O4K A;  2ZO9 B;  2IE3 C;  1M63 A;  4JA9 A;  4UT3 B;  3THN A;  4GHN A;  2A22 A;  3RQZ A;  2CWW A;  1THN B;  1S3M A;  3ICF A;  1JK7 A;  3H67 A;  1SBO A;  4Q7F A;  3NY7 A;  4AE2 A;  2IE4 C;  2R17 A;  1T6R A;  2DXL A;  1BPL A;  3GMF A;  1HP1 A;  3C9F A;  3FGA C;  4OR9 A;  3OIZ A;  1WXX A;  1J7X A;  2VY9 A;  2KKN A;  1HF2 A;  3T1I A;  3QFN A;  2WDD A;  3QFM A;  3IH9 A;  1AUZ A;  3K7W C;  1FC7 A;  1V0E A;  2O8A A;  3RL5 A;  3EGH A;  4LU9 A;  1U32 A;  4HYL A;  3DJA A;  1TH8 B;  2ZOA A;  3QDQ A;  4XS5 A;  1SU1 A;  1FC9 A;  2QFP A;  3CK2 A;  3DW8 C;  3TGH A;  3JU4 A;  5INB A;  4J6O A;  2OAS A;  3QFO A;  5J28 A;  3IHB A;  3RL4 A;  3H63 A;  4H2I A;  3PSN A;  3GVL A;  3E7B A;  4B2O A;  5EZB A;  4IL1 A;  1H4Y A;  4V0V A;  4ORA A;  2KA5 A;  4LAC C;  4ORC A;  1S3L A;  1BUZ A;  3AUZ A;  1S3N A;  4I5N C;  4F0Z A;  1FC6 A;  3ZTV A;  1TIL B;  4DMG A;  1QHW A;  3H60 A;  4FCX A;  5GTU A;  1QFC A;  3D3U A;  3H69 A;  4FBW A;  3H68 A;  4FBK A;  3LLO A;  4FBQ A;  2HYP A;  2Z06 A;  4H1Y P;  3N5U A;  3DOR A;  4V0W A;  1UTE A;  3F43 A;  3H61 A;  4O5G A;  3VSE A;  3K50 A;  4ZVZ A;  4DSY A;  3RL3 A;  1USH A;  4UT2 A;  3V4Y A;  1OI8 A;  4I5L C;  3EH7 A;  2AS0 A;  4H2F A;  4NZV A;  4YKE A;  2GJU A;  2YEQ A;  1HO5 A;  4TUI A;  1XZW A;  3DSD A;  3H66 A;  2WDF A;  1XM7 A;  4KBP A;  4ORB A;  5IOH A;  1TID B;  2CV9 A;  5EUS A;  1OIE A;  3IB8 A;  1WAO 1;  5EQV A;  2NYL C;  5EUU A;  1FJM A;  3P71 C;  2HY1 A;  1KBP A;  4G9J A;  3AGE A;  3C0K A;  1W24 A;  1WAR A;  3LDF A;  3FLO A;  4JA7 A;  4KKZ A;  3MGL A;  5HPE A;  4O24 A;  1N6D A;  4L8K A;  2BDX A;  3QG5 C;  4UT3 A;  3KBP A;  5F3W A;  3EGG A;  4UWQ A;  2QFR A;  2DFJ A;  2YVT A;  3ZTB A;  4H1S A;  1N6E A;  1TCO A;  1H4X A;  2P6B A;  3QFK A;  1S8E A;  2WDC A;  3IF5 A;  3MOG A;  2NYM C;  3IVE A;  4DHL A;  4DT2 A;  3ZXN A;  1S70 A;  3DSC A;  2JOG A;  3JYF A;  3K7V C;  2IAE C;  1HPU A;  3V97 A;  4H2G A;  3OIR A;  4WWL A;  4DGF A;  2Z72 A;  2NXF A;  4LTY A;  5EUZ A;  1OID A;  2XMO A;  2NPP C;  1T71 A;  1WXW A;  3H64 A;  4MP0 A;  5C1V A;  3V8V A;  2BQ8 X;  5JPE A;  3E7A A;  4ZX2 A;  2BCD A;  1T70 A;  4TUG A;  4DGH A;  3IVD A;  2KLN A;  3DUP A;  2QJC A;  2Z1A A;  1AUI A;  3GVK A;  2HYO A;  2RRL A;  3AV0 A; 
#chains in the Genus database with same CATH homology
 1NNW A;  1K32 A;  3IB7 A;  3PSO A;  3THO B;  4JC0 A;  1G5B A;  4L1C A;  1FCF A;  1N6F A;  4HD0 A;  3HVQ A;  5JJT A;  2USH A;  4M0V A;  4O43 A;  5JPF A;  2WDE A;  3E0J A;  3D03 A;  1IT6 A;  4XPN A;  4AEJ A;  2Q8U A;  1V73 A;  4MOY A;  1UF3 A;  2AHD A;  1MF8 A;  1Z2X A;  4H2B A;  4V0X A;  4IYP C;  3LL8 A;  2DXN A;  1II7 A;  4MOV A;  5B8I A;  5DNY A;  3GHF A;  2ZBM A;  3ZU0 A;  3C5W C;  3H62 B;  1S95 A;  3GVE A;  2O8G A;  1Z2W A;  4O4K A;  3RL3 A;  3THN A;  2ZO9 B;  2IE3 C;  1M63 A;  4JA9 A;  4UT3 B;  4GHN A;  2A22 A;  3RQZ A;  1S3M A;  3ICF A;  1JK7 A;  3H67 A;  4Q7F A;  4AE2 A;  2IE4 C;  2R17 A;  2DXL A;  3C9F A;  1BPL A;  3GMF A;  1HP1 A;  3FGA C;  4OR9 A;  3ZTV A;  1J7X A;  2KKN A;  3T1I A;  3QFN A;  2WDD A;  3QFM A;  3K7W C;  1FC7 A;  2O8A A;  3RL5 A;  3EGH A;  4LU9 A;  1U32 A;  3DJA A;  2ZOA A;  3TGH A;  1SU1 A;  1FC9 A;  2QFP A;  3CK2 A;  3DW8 C;  5INB A;  4J6O A;  5J28 A;  3QFO A;  3RL4 A;  3H63 A;  4H2I A;  3PSN A;  3E7B A;  4B2O A;  4IL1 A;  4V0V A;  4ORA A;  4ORC A;  4LAC C;  1S3L A;  3AUZ A;  1S3N A;  4I5N C;  4F0Z A;  1FC6 A;  1QHW A;  4FCX A;  5GTU A;  3H60 A;  1QFC A;  3H69 A;  4FBW A;  3H68 A;  4FBK A;  4FBQ A;  2HYP A;  2Z06 A;  4H1Y P;  3N5U A;  3DOR A;  4V0W A;  1UTE A;  3H61 A;  4O5G A;  4ZVZ A;  3K50 A;  4DSY A;  1USH A;  4UT2 A;  3V4Y A;  1OI8 A;  4I5L C;  4H2F A;  4NZV A;  4YKE A;  2GJU A;  2YEQ A;  1HO5 A;  4TUI A;  1XZW A;  3DSD A;  3H66 A;  2WDF A;  1XM7 A;  4KBP A;  4ORB A;  5IOH A;  2CV9 A;  1OIE A;  3IB8 A;  1WAO 1;  5EQV A;  2NYL C;  1FJM A;  3P71 C;  4G9J A;  2HY1 A;  1KBP A;  5JPE A;  3FLO A;  1W24 A;  1WAR A;  4JA7 A;  4KKZ A;  5HPE A;  1N6D A;  4L8K A;  2BDX A;  3QG5 C;  4UT3 A;  3KBP A;  5F3W A;  3EGG A;  4UWQ A;  2QFR A;  2DFJ A;  2YVT A;  4H1S A;  1N6E A;  1TCO A;  2P6B A;  3QFK A;  4O24 A;  1S8E A;  2WDC A;  2NYM C;  3MOG A;  3IVE A;  4DHL A;  4DT2 A;  1S70 A;  3DSC A;  2JOG A;  3JYF A;  3K7V C;  2IAE C;  1HPU A;  4H2G A;  4WWL A;  2Z72 A;  2NXF A;  4LTY A;  1OID A;  2XMO A;  2NPP C;  1T71 A;  4MP0 A;  3H64 A;  5C1V A;  2BQ8 X;  3E7A A;  4ZX2 A;  2BCD A;  1T70 A;  4TUG A;  3IVD A;  3DUP A;  2QJC A;  2Z1A A;  1AUI A;  2HYO A;  2RRL A;  3AV0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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