2ZWDB

Crystal structure of the copper-bound tyrosinase in complex with a caddie protein from streptomyces castaneoglobisporus obtained by soaking the deoxy-form crystal in dioxygen-saturated solution for 5 minutes
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
84
structure length
73
Chain Sequence
AAPESFDEVYKGRRIQGRPAGYEVFVDGVQLHVMRNADGSWISVVSHYDPVPTPRAAARAAVDELQGAPLLPF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase/metal transport
molecule keywords Tyrosinase
publication title Crystallographic evidence of drastic movement of a copper ion toward the substrate tyrosine for starting hydroxylation reaction of tyrosinase
rcsb
source organism Streptomyces castaneoglobisporus
total genus 15
structure length 73
sequence length 84
ec nomenclature
pdb deposition date 2008-12-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF06236 MelC1 Tyrosinase co-factor MelC1
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1880.10 Alpha Beta 2-Layer Sandwich protein ne1242 fold protein ne1242 domain like 2zwdB01
2AHLB 3AWYB 2ZWGB 2ZWDB 2JV8A 2ZWEB 2ZMXB 2ZWFB 3AX0B 1WX4B 3AWXB 1WXCB 3AWZB 1WX5B 3AWUB 3AWSB 3AWTB 1WX2B 2AHKB 2ZMZB 3AWWB 2ZMYB 3AWVB
chains in the Genus database with same CATH superfamily
2AHLB 4NBCA 2DE6A 3VMGA 3AWYB 4NBEA 2ZWGB 2ZWDB 4NBGA 2JV8A 2ZWEB 2ZMXB 4NBHA 2ZWFB 3AX0B 4NBAA 4NBBA 2DE7A 4NB9A 1WX4B 1Z03A 3AWXB 1WXCB 3AWZB 1WW9A 1Z01A 4NBFA 1WX5B 3AWUB 3VMHA 3AWSB 3AWTB 1WX2B 2AHKB 2ZMZB 3AWWB 1Z02A 4NB8A 2ZMYB 2DE5A 3GKQA 3GCFA 4NBDA 3AWVB 3VMIA
chains in the Genus database with same CATH topology
2AHLB 3AWYB 2ZWGB 2ZWDB 2JV8A 2ZWEB 2ZMXB 2ZWFB 3AX0B 1WX4B 3AWXB 1WXCB 3AWZB 1WX5B 3AWUB 3AWSB 3AWTB 1WX2B 2AHKB 2ZMZB 3AWWB 2ZMYB 3AWVB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AHL B;  3AWY B;  2ZWG B;  2ZWD B;  2JV8 A;  2ZWE B;  2ZMX B;  2ZWF B;  3AX0 B;  1WX4 B;  3AWX B;  1WXC B;  3AWZ B;  1WX5 B;  3AWU B;  3AWS B;  3AWT B;  1WX2 B;  2AHK B;  2ZMZ B;  3AWW B;  2ZMY B;  3AWV B; 
#chains in the Genus database with same CATH topology
 2AHL B;  4NBC A;  2DE6 A;  3VMG A;  3AWY B;  4NBE A;  2ZWG B;  2ZWD B;  4NBG A;  2JV8 A;  2ZWE B;  2ZMX B;  4NBH A;  2ZWF B;  3AX0 B;  4NBA A;  4NBB A;  2DE7 A;  4NB9 A;  1WX4 B;  1Z03 A;  3AWX B;  1WXC B;  3AWZ B;  1WW9 A;  1Z01 A;  4NBF A;  1WX5 B;  3AWU B;  3VMH A;  3AWS B;  3AWT B;  1WX2 B;  2AHK B;  2ZMZ B;  3AWW B;  1Z02 A;  4NB8 A;  2ZMY B;  2DE5 A;  3GKQ A;  3GCF A;  4NBD A;  3AWV B;  3VMI A; 
#chains in the Genus database with same CATH homology
 2AHL B;  3AWY B;  2ZWG B;  2ZWD B;  2JV8 A;  2ZWE B;  2ZMX B;  2ZWF B;  3AX0 B;  1WX4 B;  3AWX B;  1WXC B;  3AWZ B;  1WX5 B;  3AWU B;  3AWS B;  3AWT B;  1WX2 B;  2AHK B;  2ZMZ B;  3AWW B;  2ZMY B;  3AWV B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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