2AH0D

Crystal structure of the carbinolamine intermediate in the reductive half-reaction of aromatic amine dehydrogenase (aadh) with tryptamine. monoclinic form
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
Knots found
sequence length
109
structure length
108
Chain Sequence
EVNSCDYWRHCAVDGFLCSCCGGTTTTCPPGSTPSPISIGTCHNPHDGKDYLISYHDCCGKTACGRCQCNTQTRERPGYEFFLHNDVNWCMANENSTFHCTTSVLVGL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Aromatic amine dehydrogenase
publication title Atomic description of an enzyme reaction dominated by proton tunneling
pubmed doi rcsb
total genus 26
structure length 108
sequence length 109
chains with identical sequence H
other databases KnotProt 2.0: K
ec nomenclature ec 1.4.9.2: Aralkylamine dehydrogenase (azurin).
pdb deposition date 2005-07-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 2ah0D00
4O1QC 2HXCD 3PXWC 2H47B 2I0SD 1MAFL 2MTAL 4FAVC 4K3IC 2OJYD 1MAEL 3L4MC 2AGLD 3RN1C 3PXSC 2Q7QD 3L4OC 3ORVC 1MDAL 3PXTC 4L1QC 2AGXD 2I0TD 2HJBD 4FA4C 2J55L 1MG3B 4Y5RC 3SVWC 4L3HC 2AGYD 3RLMC 3SWSC 2J57K 2IUPD 3SXTC 2H3XB 3C75L 4FA1C 4FA5C 2OIZD 2IURD 4FANC 2HKMD 4L3GC 3SLEC 2BBKL 2IUQD 2MADL 2OK4D 2IUVD 2J56L 2HKRD 4FA9C 2GC7B 4FB1C 2AGWD 2IAAB 3RMZC 2AH0D 3SJLC 2I0RD 2GC4B 1MG2B 2AGZD 3RN0C 2OK6D 2AH1D 2HJ4D
chains in the Genus database with same CATH superfamily
4O1QC 2HXCD 3PXWC 2H47B 2I0SD 1MAFL 2MTAL 4FAVC 4K3IC 2OJYD 1MAEL 3L4MC 2AGLD 3RN1C 3PXSC 2Q7QD 3L4OC 3ORVC 1MDAL 3PXTC 4L1QC 2AGXD 2I0TD 2HJBD 4FA4C 2J55L 1MG3B 4Y5RC 3SVWC 4L3HC 2AGYD 3RLMC 3SWSC 2J57K 2IUPD 3SXTC 2H3XB 3C75L 4FA1C 4FA5C 2OIZD 2IURD 4FANC 2HKMD 4L3GC 3SLEC 2BBKL 2IUQD 2MADL 2OK4D 2IUVD 2J56L 2HKRD 4FA9C 2GC7B 4FB1C 2AGWD 2IAAB 3RMZC 2AH0D 3SJLC 2I0RD 2GC4B 1MG2B 2AGZD 3RN0C 2OK6D 2AH1D 2HJ4D
chains in the Genus database with same CATH topology
4O1QC 2HXCD 3PXWC 2H47B 2I0SD 1MAFL 2MTAL 4FAVC 4K3IC 2OJYD 1MAEL 3L4MC 2AGLD 3RN1C 3PXSC 2Q7QD 3L4OC 3ORVC 1MDAL 3PXTC 4L1QC 2AGXD 2I0TD 2HJBD 4FA4C 2J55L 1MG3B 4Y5RC 3SVWC 4L3HC 2AGYD 3RLMC 3SWSC 2J57K 2IUPD 3SXTC 2H3XB 3C75L 4FA1C 4FA5C 2OIZD 2IURD 4FANC 2HKMD 4L3GC 3SLEC 2BBKL 2IUQD 2MADL 2OK4D 2IUVD 2J56L 2HKRD 4FA9C 2GC7B 4FB1C 2AGWD 2IAAB 3RMZC 2AH0D 3SJLC 2I0RD 2GC4B 1MG2B 2AGZD 3RN0C 2OK6D 2AH1D 2HJ4D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4O1Q C;  2HXC D;  3PXW C;  2H47 B;  2I0S D;  1MAF L;  2MTA L;  4FAV C;  4K3I C;  2OJY D;  1MAE L;  3L4M C;  2AGL D;  3RN1 C;  3PXS C;  2Q7Q D;  3L4O C;  3ORV C;  1MDA L;  3PXT C;  4L1Q C;  2AGX D;  2I0T D;  2HJB D;  4FA4 C;  2J55 L;  1MG3 B;  4Y5R C;  3SVW C;  4L3H C;  2AGY D;  3RLM C;  3SWS C;  2J57 K;  2IUP D;  3SXT C;  2H3X B;  3C75 L;  4FA1 C;  4FA5 C;  2OIZ D;  2IUR D;  4FAN C;  2HKM D;  4L3G C;  3SLE C;  2BBK L;  2IUQ D;  2MAD L;  2OK4 D;  2IUV D;  2J56 L;  2HKR D;  4FA9 C;  2GC7 B;  4FB1 C;  2AGW D;  2IAA B;  3RMZ C;  2AH0 D;  3SJL C;  2I0R D;  2GC4 B;  1MG2 B;  2AGZ D;  3RN0 C;  2OK6 D;  2AH1 D;  2HJ4 D; 
#chains in the Genus database with same CATH topology
 4O1Q C;  2HXC D;  3PXW C;  2H47 B;  2I0S D;  1MAF L;  2MTA L;  4FAV C;  4K3I C;  2OJY D;  1MAE L;  3L4M C;  2AGL D;  3RN1 C;  3PXS C;  2Q7Q D;  3L4O C;  3ORV C;  1MDA L;  3PXT C;  4L1Q C;  2AGX D;  2I0T D;  2HJB D;  4FA4 C;  2J55 L;  1MG3 B;  4Y5R C;  3SVW C;  4L3H C;  2AGY D;  3RLM C;  3SWS C;  2J57 K;  2IUP D;  3SXT C;  2H3X B;  3C75 L;  4FA1 C;  4FA5 C;  2OIZ D;  2IUR D;  4FAN C;  2HKM D;  4L3G C;  3SLE C;  2BBK L;  2IUQ D;  2MAD L;  2OK4 D;  2IUV D;  2J56 L;  2HKR D;  4FA9 C;  2GC7 B;  4FB1 C;  2AGW D;  2IAA B;  3RMZ C;  2AH0 D;  3SJL C;  2I0R D;  2GC4 B;  1MG2 B;  2AGZ D;  3RN0 C;  2OK6 D;  2AH1 D;  2HJ4 D; 
#chains in the Genus database with same CATH homology
 4O1Q C;  2HXC D;  3PXW C;  2H47 B;  2I0S D;  1MAF L;  2MTA L;  4FAV C;  4K3I C;  2OJY D;  1MAE L;  3L4M C;  2AGL D;  3RN1 C;  3PXS C;  2Q7Q D;  3L4O C;  3ORV C;  1MDA L;  3PXT C;  4L1Q C;  2AGX D;  2I0T D;  2HJB D;  4FA4 C;  2J55 L;  1MG3 B;  4Y5R C;  3SVW C;  4L3H C;  2AGY D;  3RLM C;  3SWS C;  2J57 K;  2IUP D;  3SXT C;  2H3X B;  3C75 L;  4FA1 C;  4FA5 C;  2OIZ D;  2IUR D;  4FAN C;  2HKM D;  4L3G C;  3SLE C;  2BBK L;  2IUQ D;  2MAD L;  2OK4 D;  2IUV D;  2J56 L;  2HKR D;  4FA9 C;  2GC7 B;  4FB1 C;  2AGW D;  2IAA B;  3RMZ C;  2AH0 D;  3SJL C;  2I0R D;  2GC4 B;  1MG2 B;  2AGZ D;  3RN0 C;  2OK6 D;  2AH1 D;  2HJ4 D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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