2C9EA

Peridinin-chlorophyll a protein, high-salt form
Total Genus 127
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
127
sequence length
326
structure length
317
Chain Sequence
DAIADASKRFSDATYPIAEKFDWGGSSAIAKYIADASAGNPRQAALAVEKLLEVGLTMDPKLVRAAVEAHSKALDSAKKNAKLMASKEDFAAVNEALARMIASADKQKFAALRTAFPESRELQGKLFAGNNAFEAEKAYDSFKALTSAVRDASINGAKAPVIAEDGPVGRAAKKFSEATYPIMDKLDWGKSPEISKYIETASAKNPKMMADGIDKTLEVALTMNQNAINDAVFAHVRAIKGALNTPGLVAERDDFARVNLALAKMIATADPAKFKALLTAFPGNADLQMALFAANNPEQAKAAYETFVALTSAVASS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Photosynthesis
molecule keywords PERIDININ-CHLOROPHYLL A PROTEIN
publication title X-Ray Structure of the High-Salt Form of the Peridinin-Chlorophyll A-Protein from the Dinoflagellate Amphidinium Carterae: Modulation of the Spectral Properties of Pigments by the Protein Environment.
pubmed doi rcsb
total genus 127
structure length 317
sequence length 326
ec nomenclature
pdb deposition date 2005-12-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02429 PCP Peridinin-chlorophyll A binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.40.10.10 Mainly Alpha Alpha solenoid Peridinin-chlorophyll Protein, Chain M Peridinin-chlorophyll A binding 2c9eA00
2C9EA 2X20M 2X1ZM 1PPRM 2X21M 3IIUM 3IISM
chains in the Genus database with same CATH superfamily
2C9EA 2X20M 2X1ZM 1PPRM 2X21M 3IIUM 3IISM
chains in the Genus database with same CATH topology
2C9EA 2X20M 2X1ZM 1PPRM 2X21M 3IIUM 3IISM
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2C9E A;  2X20 M;  2X1Z M;  1PPR M;  2X21 M;  3IIU M;  3IIS M; 
#chains in the Genus database with same CATH topology
 2C9E A;  2X20 M;  2X1Z M;  1PPR M;  2X21 M;  3IIU M;  3IIS M; 
#chains in the Genus database with same CATH homology
 2C9E A;  2X20 M;  2X1Z M;  1PPR M;  2X21 M;  3IIU M;  3IIS M; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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